Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH01_06_S1_L001_R1_001_val_1.fq.gz to CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH01_06_S1_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH01_06_S1_L001_R2_001_val_2.fq.gz to CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH01_06_S1_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:3133:1367_1:N:0:NTCACG/1	77	*	0	0	*	*	0	0	GGGAGGTTTTTTTAGTTATAGTGTAGTTTTTTATTTGTTTAGTATTTTTAGAGTAGTTTGTAGAGTTTAGGTGTTTAGGGGTTATTTTTATTT	FFJFJJ<FFJJJJJJF-7FAFJJAFJJFJJJJJJFJJ-F-FJAJ<FAJ7FJJJFJJFJJJFJJAJ7AFJJJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:3133:1367_2:N:0:NTCACG/2	141	*	0	0	*	*	0	0	AAATAAAAATAACCCCTAAACACCTAAACTCTACAAACTACTCTAAAAATACTAAACAAATAAAAAACTACACTATAACTAAAAAAACCTCCC	JJA-FA-7JFF<FAFJJJJJ<<F-AA<-<7--AFJJJJJJJ-F--<FJJ<FJFA<FF-A7JJJAFAAF<AAFA7F7FJJ7AFAJJFFJJAF-A	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:3133:1367_1:N:0:NTCACG/1	77	*	0	0	*	*	0	0	GGGAGGTTTTTTTAGTTATAGTGTAGTTTTTTATTTGTTTAGTATTTTTAGAGTAGTTTGTAGAGTTTAGGTGTTTAGGGGTTATTTTTATTT	FFJFJJ<FFJJJJJJF-7FAFJJAFJJFJJJJJJFJJ-F-FJAJ<FAJ7FJJJFJJFJJJFJJAJ7AFJJJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:3133:1367_2:N:0:NTCACG/2	141	*	0	0	*	*	0	0	AAATAAAAATAACCCCTAAACACCTAAACTCTACAAACTACTCTAAAAATACTAAACAAATAAAAAACTACACTATAACTAAAAAAACCTCCC	JJA-FA-7JFF<FAFJJJJJ<<F-AA<-<7--AFJJJJJJJ-F--<FJJ<FJFA<FF-A7JJJAFAAF<AAFA7F7FJJ7AFAJJFFJJAF-A	YT:Z:UP

>>> Writing bisulfite mapping results to CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28934 (72.33%) aligned concordantly 0 times
    4864 (12.16%) aligned concordantly exactly 1 time
    6202 (15.51%) aligned concordantly >1 times
27.66% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    29085 (72.71%) aligned concordantly 0 times
    4740 (11.85%) aligned concordantly exactly 1 time
    6175 (15.44%) aligned concordantly >1 times
27.29% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH01_06_S1_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_06_S1_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11352
Mapping efficiency:	28.4%

Sequence pairs with no alignments under any condition:	24337
Sequence pairs did not map uniquely:	4311
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5605	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5747	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	409570

Total methylated C's in CpG context:	53224
Total methylated C's in CHG context:	2108
Total methylated C's in CHH context:	30914
Total methylated C's in Unknown context:	527

Total unmethylated C's in CpG context:	17656
Total unmethylated C's in CHG context:	82830
Total unmethylated C's in CHH context:	222838
Total unmethylated C's in Unknown context:	1150

C methylated in CpG context:	75.1%
C methylated in CHG context:	2.5%
C methylated in CHH context:	12.2%
C methylated in unknown context (CN or CHN):	31.4%


Bismark completed in 0d 0h 1m 9s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH01_14_S2_L001_R1_001_val_1.fq.gz to CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH01_14_S2_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH01_14_S2_L001_R2_001_val_2.fq.gz to CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH01_14_S2_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2057:1367_1:N:0:NGATGT/1	99	PGA_scaffold43__161_contigs__length_26349757_CT_converted	23810489	30	50M	=	23810643	203	GTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	JFF<FJJAA<F7<FJ--<A-F-F-FAF<F<<7A-F7JJF7F--7<JJ-AA	AS:i:0	XS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:50	YS:i:0	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:2057:1367_2:N:0:NGATGT/2	147	PGA_scaffold43__161_contigs__length_26349757_CT_converted	23810643	30	49M	=	23810489	-203	GTGTGTGTGTGTGTGTGTTTGTGTGTGTTTGTGTGTGTGTGTGTGTGTG	-A77-77-AA<----<<<-<7-7-7-F-7JFJJF7---AF7JJJJJFFJ	AS:i:0	XS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:49	YS:i:0	YT:Z:CP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2057:1367_1:N:0:NGATGT/1	83	PGA_scaffold2__216_contigs__length_42616187_GA_converted	18726280	1	50M	=	18726249	-81	ACACACACACACACACACACACACACACACACACATACACACACACACAC	AA-JJ<7--F7FJJ7F-A7<<F<FAF-F-F-A<--JF<7F<AAJJF<FFJ	AS:i:-6	XS:i:-6	XN:i:0	XM:i:1	XO:i:0	XG:i:0	NM:i:1	MD:Z:35C14	YS:i:0	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:2057:1367_2:N:0:NGATGT/2	163	PGA_scaffold2__216_contigs__length_42616187_GA_converted	18726249	1	49M	=	18726280	81	CACACACACACACACACACAAACACACACAAACACACACACACACACAC	JFFJJJJJ7FA---7FJJFJ7-F-7-7-7<-<<<----<AA-77-77A-	AS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:49	YS:i:-6	YT:Z:CP

>>> Writing bisulfite mapping results to CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28011 (70.03%) aligned concordantly 0 times
    4574 (11.44%) aligned concordantly exactly 1 time
    7415 (18.54%) aligned concordantly >1 times
29.97% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27938 (69.84%) aligned concordantly 0 times
    4596 (11.49%) aligned concordantly exactly 1 time
    7466 (18.66%) aligned concordantly >1 times
30.16% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH01_14_S2_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_14_S2_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	10979
Mapping efficiency:	27.4%

Sequence pairs with no alignments under any condition:	23540
Sequence pairs did not map uniquely:	5481
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5518	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5461	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	332903

Total methylated C's in CpG context:	34746
Total methylated C's in CHG context:	1632
Total methylated C's in CHH context:	32624
Total methylated C's in Unknown context:	460

Total unmethylated C's in CpG context:	15604
Total unmethylated C's in CHG context:	61648
Total unmethylated C's in CHH context:	186649
Total unmethylated C's in Unknown context:	1249

C methylated in CpG context:	69.0%
C methylated in CHG context:	2.6%
C methylated in CHH context:	14.9%
C methylated in unknown context (CN or CHN):	26.9%


Bismark completed in 0d 0h 1m 4s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH01_22_S3_L001_R1_001_val_1.fq.gz to CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH01_22_S3_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH01_22_S3_L001_R2_001_val_2.fq.gz to CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH01_22_S3_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:4777:1367_1:N:0:NTAGGC/1	77	*	0	0	*	*	0	0	ATTTTTTAATATGTTTTAATTAAATTGTTATAATTTTTATATTTTTATTAAAATAAAAAATTTTTTTTTTATAGTTTTATAATAATTTAAATTATATTATTAGATTGAAAATTATAAATTAAATATTATT	JJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:4777:1367_2:N:0:NTAGGC/2	141	*	0	0	*	*	0	0	CCAATTTATTATTATAAATTATTAAATTAATTTATATATAATTAAAAATATTTTATTATCTATAAATAATTTTAATAATAAAAAATTTTTAATATATAATTTTCAATCAAATAATATATTTTAAATTA	JJFJJFAAFFAJ<A<FFJJJ<-J7-AF<--7-<FJJJ--7A-<7-7-77-7-FF<A-FAJJAJ7-FFJFAJJFF<AFFAJ-A-7-----A<-7-77-7--7-AFF7--7-7--7A<-A--7-A-7--7	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:4777:1367_1:N:0:NTAGGC/1	77	*	0	0	*	*	0	0	ATTTTTTAATATGTTTTAATTAAATTGTTATAATTTTTATATTTTTATTAAAATAAAAAATTTTTTTTTTATAGTTTTATAATAATTTAAATTATATTATTAGATTGAAAATTATAAATTAAATATTATT	JJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:4777:1367_2:N:0:NTAGGC/2	141	*	0	0	*	*	0	0	CCAATTTATTATTATAAATTATTAAATTAATTTATATATAATTAAAAATATTTTATTATCTATAAATAATTTTAATAATAAAAAATTTTTAATATATAATTTTCAATCAAATAATATATTTTAAATTA	JJFJJFAAFFAJ<A<FFJJJ<-J7-AF<--7-<FJJJ--7A-<7-7-77-7-FF<A-FAJJAJ7-FFJFAJJFF<AFFAJ-A-7-----A<-7-77-7--7-AFF7--7-7--7A<-A--7-A-7--7	YT:Z:UP

>>> Writing bisulfite mapping results to CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R2_001_val_2.fq.gz
Chromosomal sequence could not be extracted for	K00337:412:HKTCJBBXY:1:1101:9628:16207_1:N:0:TTAGGC	contig_6410_pilon__uns	3
Chromosomal sequence could not be extracted for	K00337:412:HKTCJBBXY:1:1101:10094:16207_1:N:0:TTAGGC	contig_6410_pilon__uns	3
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28420 (71.05%) aligned concordantly 0 times
    4874 (12.19%) aligned concordantly exactly 1 time
    6706 (16.77%) aligned concordantly >1 times
28.95% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28348 (70.87%) aligned concordantly 0 times
    4980 (12.45%) aligned concordantly exactly 1 time
    6672 (16.68%) aligned concordantly >1 times
29.13% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH01_22_S3_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_22_S3_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11731
Mapping efficiency:	29.3%

Sequence pairs with no alignments under any condition:	23562
Sequence pairs did not map uniquely:	4707
Sequence pairs which were discarded because genomic sequence could not be extracted:	2

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5797	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5932	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	412236

Total methylated C's in CpG context:	42748
Total methylated C's in CHG context:	1941
Total methylated C's in CHH context:	33547
Total methylated C's in Unknown context:	488

Total unmethylated C's in CpG context:	20965
Total unmethylated C's in CHG context:	80484
Total unmethylated C's in CHH context:	232551
Total unmethylated C's in Unknown context:	1301

C methylated in CpG context:	67.1%
C methylated in CHG context:	2.4%
C methylated in CHH context:	12.6%
C methylated in unknown context (CN or CHN):	27.3%


Bismark completed in 0d 0h 1m 8s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH01_38_S4_L001_R1_001_val_1.fq.gz to CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH01_38_S4_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH01_38_S4_L001_R2_001_val_2.fq.gz to CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH01_38_S4_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:4066:1367_1:N:0:NGACCA/1	77	*	0	0	*	*	0	0	AGGATAAATATTATAGTTAGTTGTGAGGGTAGTTGGAATTGAAGAAGATTTAAAGTGAATTAAATAGGTAAAAAATTTAGGGTTGGTATTAAAAGTAATATTAGTATTAATAGAAATAATTTGATTAG	JJJJFFJFJJJJJJJ--<AAFJA-7777F<7JFFJ7<<FAFFJFJF<AF7FAFJAF-FJ-7JJJAJJFAJJJJJJJFAJFJ77JFJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJFJJJJJJFFFJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:4066:1367_2:N:0:NGACCA/2	141	*	0	0	*	*	0	0	TAAATTTTCTACTTATAAATTTAATCATATATCAAACATTTATTTCTCACCATAATTCAAACTTTTTTTCTAATAAACTATTACTCACTTCACTTACTCCAACAACCCCAACACCCATTTAACAAACAC	77F--<-<7F-<--F--<----<F<FJ-<-<<<F<AA-7--<--77-A--7AAJF-AFFA<J-7<7AJ7AA-AJFFJA-----77--A-7A77-77F-----77----7--7-<F-------7----<F	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:4066:1367_1:N:0:NGACCA/1	77	*	0	0	*	*	0	0	AGGATAAATATTATAGTTAGTTGTGAGGGTAGTTGGAATTGAAGAAGATTTAAAGTGAATTAAATAGGTAAAAAATTTAGGGTTGGTATTAAAAGTAATATTAGTATTAATAGAAATAATTTGATTAG	JJJJFFJFJJJJJJJ--<AAFJA-7777F<7JFFJ7<<FAFFJFJF<AF7FAFJAF-FJ-7JJJAJJFAJJJJJJJFAJFJ77JFJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJFJJJJJJFFFJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:4066:1367_2:N:0:NGACCA/2	141	*	0	0	*	*	0	0	TAAATTTTCTACTTATAAATTTAATCATATATCAAACATTTATTTCTCACCATAATTCAAACTTTTTTTCTAATAAACTATTACTCACTTCACTTACTCCAACAACCCCAACACCCATTTAACAAACAC	77F--<-<7F-<--F--<----<F<FJ-<-<<<F<AA-7--<--77-A--7AAJF-AFFA<J-7<7AJ7AA-AJFFJA-----77--A-7A77-77F-----77----7--7-<F-------7----<F	YT:Z:UP

>>> Writing bisulfite mapping results to CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28384 (70.96%) aligned concordantly 0 times
    4636 (11.59%) aligned concordantly exactly 1 time
    6980 (17.45%) aligned concordantly >1 times
29.04% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28265 (70.66%) aligned concordantly 0 times
    4734 (11.84%) aligned concordantly exactly 1 time
    7001 (17.50%) aligned concordantly >1 times
29.34% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH01_38_S4_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH01_38_S4_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11180
Mapping efficiency:	27.9%

Sequence pairs with no alignments under any condition:	23867
Sequence pairs did not map uniquely:	4953
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5592	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5588	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	343557

Total methylated C's in CpG context:	34977
Total methylated C's in CHG context:	2045
Total methylated C's in CHH context:	36717
Total methylated C's in Unknown context:	606

Total unmethylated C's in CpG context:	16226
Total unmethylated C's in CHG context:	65423
Total unmethylated C's in CHH context:	188169
Total unmethylated C's in Unknown context:	1310

C methylated in CpG context:	68.3%
C methylated in CHG context:	3.0%
C methylated in CHH context:	16.3%
C methylated in unknown context (CN or CHN):	31.6%


Bismark completed in 0d 0h 1m 7s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH03_04_S5_L001_R1_001_val_1.fq.gz to CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH03_04_S5_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH03_04_S5_L001_R2_001_val_2.fq.gz to CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH03_04_S5_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2889:1367_1:N:0:NCAGTG/1	77	*	0	0	*	*	0	0	AAAATATAAATATAAGATTTTTGATATTGTAAGTATATGGAGAGAAAAATGTAAAGGATATTGTTATGGGTTGATGTTGTGTG	JJJJJJJJJJJJJJJJJ<JJJJJJJJJJJJJJJJJJJFJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2889:1367_2:N:0:NCAGTG/2	141	*	0	0	*	*	0	0	CACACAACATCAACCCATAACAAAATCTTTTACATTATTCTCTCCATATACTTACAATATCAAAAATCTTATATTTATATTTTTATATATATTAAAACAAAAAAAAATCAT	JJJJJJJJJFJJJJJJJJJJAJJ-<<F-<<<AFJ<<--<<7-7<JJJJA<FF7FFJJFJAJJJJJJJFAAFAJJFAJFJ--7<FA<<7AFA-7<<F-77AJJAAA-7-777	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2889:1367_1:N:0:NCAGTG/1	77	*	0	0	*	*	0	0	AAAATATAAATATAAGATTTTTGATATTGTAAGTATATGGAGAGAAAAATGTAAAGGATATTGTTATGGGTTGATGTTGTGTG	JJJJJJJJJJJJJJJJJ<JJJJJJJJJJJJJJJJJJJFJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2889:1367_2:N:0:NCAGTG/2	141	*	0	0	*	*	0	0	CACACAACATCAACCCATAACAAAATCTTTTACATTATTCTCTCCATATACTTACAATATCAAAAATCTTATATTTATATTTTTATATATATTAAAACAAAAAAAAATCAT	JJJJJJJJJFJJJJJJJJJJAJJ-<<F-<<<AFJ<<--<<7-7<JJJJA<FF7FFJJFJAJJJJJJJFAAFAJJFAJFJ--7<FA<<7AFA-7<<F-77AJJAAA-7-777	YT:Z:UP

>>> Writing bisulfite mapping results to CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R2_001_val_2.fq.gz
Chromosomal sequence could not be extracted for	K00337:412:HKTCJBBXY:1:1101:23368:23909_1:N:0:ACAGTG	contig_5257_pilon__uns	1743
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27246 (68.11%) aligned concordantly 0 times
    2934 (7.33%) aligned concordantly exactly 1 time
    9820 (24.55%) aligned concordantly >1 times
31.89% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27267 (68.17%) aligned concordantly 0 times
    2869 (7.17%) aligned concordantly exactly 1 time
    9864 (24.66%) aligned concordantly >1 times
31.83% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH03_04_S5_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_04_S5_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	8112
Mapping efficiency:	20.3%

Sequence pairs with no alignments under any condition:	24346
Sequence pairs did not map uniquely:	7542
Sequence pairs which were discarded because genomic sequence could not be extracted:	1

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	4105	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	4006	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	219722

Total methylated C's in CpG context:	3253
Total methylated C's in CHG context:	1297
Total methylated C's in CHH context:	64705
Total methylated C's in Unknown context:	752

Total unmethylated C's in CpG context:	23088
Total unmethylated C's in CHG context:	29805
Total unmethylated C's in CHH context:	97574
Total unmethylated C's in Unknown context:	1081

C methylated in CpG context:	12.3%
C methylated in CHG context:	4.2%
C methylated in CHH context:	39.9%
C methylated in unknown context (CN or CHN):	41.0%


Bismark completed in 0d 0h 1m 14s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH03_15_S6_L001_R1_001_val_1.fq.gz to CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH03_15_S6_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH03_15_S6_L001_R2_001_val_2.fq.gz to CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH03_15_S6_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:1895:1367_1:N:0:NCCAAT/1	77	*	0	0	*	*	0	0	ATTTAAATAATTAATTAAAATAAAATATATTTTTTATATTT	JFJJJJJJJJJJJJJ<JFJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:1895:1367_2:N:0:NCCAAT/2	141	*	0	0	*	*	0	0	AAATATAAAAAATATATTTTATTTTAATTAATTATTTAAAT	F-F-FAJFJFJ-<-<AAAAJ---<<JJJJ-<<<FAJA-<77	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:1895:1367_1:N:0:NCCAAT/1	77	*	0	0	*	*	0	0	ATTTAAATAATTAATTAAAATAAAATATATTTTTTATATTT	JFJJJJJJJJJJJJJ<JFJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:1895:1367_2:N:0:NCCAAT/2	141	*	0	0	*	*	0	0	AAATATAAAAAATATATTTTATTTTAATTAATTATTTAAAT	F-F-FAJFJFJ-<-<AAAAJ---<<JJJJ-<<<FAJA-<77	YT:Z:UP

>>> Writing bisulfite mapping results to CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    29985 (74.96%) aligned concordantly 0 times
    3079 (7.70%) aligned concordantly exactly 1 time
    6936 (17.34%) aligned concordantly >1 times
25.04% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    29837 (74.59%) aligned concordantly 0 times
    3167 (7.92%) aligned concordantly exactly 1 time
    6996 (17.49%) aligned concordantly >1 times
25.41% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH03_15_S6_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_15_S6_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	7785
Mapping efficiency:	19.5%

Sequence pairs with no alignments under any condition:	26800
Sequence pairs did not map uniquely:	5415
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	3813	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	3972	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	250884

Total methylated C's in CpG context:	7454
Total methylated C's in CHG context:	1258
Total methylated C's in CHH context:	43702
Total methylated C's in Unknown context:	475

Total unmethylated C's in CpG context:	25801
Total unmethylated C's in CHG context:	40628
Total unmethylated C's in CHH context:	132041
Total unmethylated C's in Unknown context:	1014

C methylated in CpG context:	22.4%
C methylated in CHG context:	3.0%
C methylated in CHH context:	24.9%
C methylated in unknown context (CN or CHN):	31.9%


Bismark completed in 0d 0h 1m 6s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH03_33_S7_L001_R1_001_val_1.fq.gz to CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH03_33_S7_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH03_33_S7_L001_R2_001_val_2.fq.gz to CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH03_33_S7_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:1874:1367_1:N:0:NAGATC/1	77	*	0	0	*	*	0	0	TATTATAAATTTTAAATTTTTTTTATAAAAAAATGATTGATTATTTTGAAAAAAATTAATAATAATAAATTATATAATAAATTATATATATAAAATTATATTAATTAATTTTATATAATTTTTTTAT	JJJJJJJJJJJJJJJJ7-F7AFFAJFJJJJJJJFJJJFJJFJJAJAFFAJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJAJFFFJJJJJJJJJJ<AJJJJJ<JFJJJJJJFF-FJFFFJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:1874:1367_2:N:0:NAGATC/2	141	*	0	0	*	*	0	0	ATAAAAAAAAAATATAAAATTAATTAATTTAATATTATATATATAATTTAAAATATAATATAAAATTATTAATTTTATACAAAATAATCAAACATATTTATATAAAAAAAAAATAAAATATAAAATA	J-<F7-7-------<7J7<JF<A7F--<-<--7--F--7-7-7-7F-7----77-7-A-----7AA-7<J<J-7-7-A-7<7<-7-<AJ-77--7-7---77A------7F---7--------7A-7	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:1874:1367_1:N:0:NAGATC/1	77	*	0	0	*	*	0	0	TATTATAAATTTTAAATTTTTTTTATAAAAAAATGATTGATTATTTTGAAAAAAATTAATAATAATAAATTATATAATAAATTATATATATAAAATTATATTAATTAATTTTATATAATTTTTTTAT	JJJJJJJJJJJJJJJJ7-F7AFFAJFJJJJJJJFJJJFJJFJJAJAFFAJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJAJFFFJJJJJJJJJJ<AJJJJJ<JFJJJJJJFF-FJFFFJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:1874:1367_2:N:0:NAGATC/2	141	*	0	0	*	*	0	0	ATAAAAAAAAAATATAAAATTAATTAATTTAATATTATATATATAATTTAAAATATAATATAAAATTATTAATTTTATACAAAATAATCAAACATATTTATATAAAAAAAAAATAAAATATAAAATA	J-<F7-7-------<7J7<JF<A7F--<-<--7--F--7-7-7-7F-7----77-7-A-----7AA-7<J<J-7-7-A-7<7<-7-<AJ-77--7-7---77A------7F---7--------7A-7	YT:Z:UP

>>> Writing bisulfite mapping results to CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    29789 (74.47%) aligned concordantly 0 times
    4679 (11.70%) aligned concordantly exactly 1 time
    5532 (13.83%) aligned concordantly >1 times
25.53% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    29642 (74.11%) aligned concordantly 0 times
    4798 (11.99%) aligned concordantly exactly 1 time
    5560 (13.90%) aligned concordantly >1 times
25.89% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH03_33_S7_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH03_33_S7_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11131
Mapping efficiency:	27.8%

Sequence pairs with no alignments under any condition:	25146
Sequence pairs did not map uniquely:	3723
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5486	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5645	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	426598

Total methylated C's in CpG context:	53915
Total methylated C's in CHG context:	2172
Total methylated C's in CHH context:	29619
Total methylated C's in Unknown context:	433

Total unmethylated C's in CpG context:	18673
Total unmethylated C's in CHG context:	87164
Total unmethylated C's in CHH context:	235055
Total unmethylated C's in Unknown context:	1115

C methylated in CpG context:	74.3%
C methylated in CHG context:	2.4%
C methylated in CHH context:	11.2%
C methylated in unknown context (CN or CHN):	28.0%


Bismark completed in 0d 0h 1m 7s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH05_01_S8_L001_R1_001_val_1.fq.gz to CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH05_01_S8_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH05_01_S8_L001_R2_001_val_2.fq.gz to CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH05_01_S8_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:3742:1367_1:N:0:NCTTGA/1	77	*	0	0	*	*	0	0	TTTTTGATTTATTTAGTTTTGGTGAGGATGGTGTTATGGTAGTAAGTGGGTGTTTTTATTTGGAAAGGATTTAGAGGATAGTTATAAGAATGGTATTGGAATTGAAGG	JJFJJJJJJJJJJJJA-<FJJJJJJJJFFJFFJJJJJJJFJJ<JJJFFFJJJJJJJJJJJJJJJJJAF<JAJJJJJJFFFJF-FJJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:3742:1367_2:N:0:NCTTGA/2	141	*	0	0	*	*	0	0	CCTTCAATTCCAATACCATTCTTATAATTATCCTCTAAATCCTTTCCAAATAAAAACACCCACTTACTACCATAACACCATCCTCACCAAAACTAAATAAATCTACAAAACCATATCAACATCAAAAAAAC	FJJJAFFAFFFFFJAJJFA<-A--7FF--<7<FJJAF-AFF--<A<FJF--<AJFJFJJFF<JJFJA-FFFJ-AAFFJJJAFJ7F<FJJJFJJ7F---777A7-77A7--777-A--FA-777---<---7	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:3742:1367_1:N:0:NCTTGA/1	77	*	0	0	*	*	0	0	TTTTTGATTTATTTAGTTTTGGTGAGGATGGTGTTATGGTAGTAAGTGGGTGTTTTTATTTGGAAAGGATTTAGAGGATAGTTATAAGAATGGTATTGGAATTGAAGG	JJFJJJJJJJJJJJJA-<FJJJJJJJJFFJFFJJJJJJJFJJ<JJJFFFJJJJJJJJJJJJJJJJJAF<JAJJJJJJFFFJF-FJJJJJJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:3742:1367_2:N:0:NCTTGA/2	141	*	0	0	*	*	0	0	CCTTCAATTCCAATACCATTCTTATAATTATCCTCTAAATCCTTTCCAAATAAAAACACCCACTTACTACCATAACACCATCCTCACCAAAACTAAATAAATCTACAAAACCATATCAACATCAAAAAAAC	FJJJAFFAFFFFFJAJJFA<-A--7FF--<7<FJJAF-AFF--<A<FJF--<AJFJFJJFF<JJFJA-FFFJ-AAFFJJJAFJ7F<FJJJFJJ7F---777A7-77A7--777-A--FA-777---<---7	YT:Z:UP

>>> Writing bisulfite mapping results to CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    26955 (67.39%) aligned concordantly 0 times
    3738 (9.35%) aligned concordantly exactly 1 time
    9307 (23.27%) aligned concordantly >1 times
32.61% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    26955 (67.39%) aligned concordantly 0 times
    3826 (9.56%) aligned concordantly exactly 1 time
    9219 (23.05%) aligned concordantly >1 times
32.61% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH05_01_S8_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_01_S8_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	10099
Mapping efficiency:	25.2%

Sequence pairs with no alignments under any condition:	23201
Sequence pairs did not map uniquely:	6700
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5077	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5022	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	285343

Total methylated C's in CpG context:	18750
Total methylated C's in CHG context:	1839
Total methylated C's in CHH context:	61919
Total methylated C's in Unknown context:	713

Total unmethylated C's in CpG context:	17118
Total unmethylated C's in CHG context:	48319
Total unmethylated C's in CHH context:	137398
Total unmethylated C's in Unknown context:	1139

C methylated in CpG context:	52.3%
C methylated in CHG context:	3.7%
C methylated in CHH context:	31.1%
C methylated in unknown context (CN or CHN):	38.5%


Bismark completed in 0d 0h 1m 16s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH05_06_S9_L001_R1_001_val_1.fq.gz to CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH05_06_S9_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH05_06_S9_L001_R2_001_val_2.fq.gz to CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH05_06_S9_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:4513:1367_1:N:0:NATCAG/1	99	PGA_scaffold43__161_contigs__length_26349757_CT_converted	4875122	1	83M	=	4875122	-83	TGTGTTTATTGGTATTTGTTATATATTATAAGGATTGGAAAATTTTGTAGATTTTGAATTTATGTTTGAAAATTTAATATGAG	JJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJ	AS:i:0	XS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:83	YS:i:0	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:4513:1367_2:N:0:NATCAG/2	147	PGA_scaffold43__161_contigs__length_26349757_CT_converted	4875122	1	83M	=	4875122	-83	TGTGTTTATTGGTATTTGTTATATATTATAAGGATTGGAAAATTTTGTAGATTTTGAATTTATGTTTGAAAATTTAATATGAG	JJFJJJJFJJJJJJJJFJJJJJJJFJJJAFAJJJJFJF<FFFJJJJJJJJJJFFA<AJJJJJFJJJJF-F<-JJJJFJFJFJJ	AS:i:0	XS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:83	YS:i:0	YT:Z:CP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:4513:1367_1:N:0:NATCAG/1	83	PGA_scaffold24__25_contigs__length_9615596_GA_converted	3189698	1	83M	=	3189698	-83	CTCATATTAAATTTTCAAACATAAATTCAAAATCTACAAAATTTTCCAATCCTTATAATATATAACAAATACCAATAAACACA	JJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJJ	AS:i:0	XS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:83	YS:i:0	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:4513:1367_2:N:0:NATCAG/2	163	PGA_scaffold24__25_contigs__length_9615596_GA_converted	3189698	1	83M	=	3189698	-83	CTCATATTAAATTTTCAAACATAAATTCAAAATCTACAAAATTTTCCAATCCTTATAATATATAACAAATACCAATAAACACA	JJFJFJFJJJJ-<F-FJJJJFJJJJJA<AFFJJJJJJJJJJFFF<FJFJJJJAFAJJJFJJJJJJJFJJJJJJJJFJJJJFJJ	AS:i:0	XS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:83	YS:i:0	YT:Z:CP

>>> Writing bisulfite mapping results to CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    30441 (76.10%) aligned concordantly 0 times
    2935 (7.34%) aligned concordantly exactly 1 time
    6624 (16.56%) aligned concordantly >1 times
23.90% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    30276 (75.69%) aligned concordantly 0 times
    2992 (7.48%) aligned concordantly exactly 1 time
    6732 (16.83%) aligned concordantly >1 times
24.31% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH05_06_S9_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_06_S9_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	7390
Mapping efficiency:	18.5%

Sequence pairs with no alignments under any condition:	27436
Sequence pairs did not map uniquely:	5174
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	3690	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	3700	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	257936

Total methylated C's in CpG context:	2668
Total methylated C's in CHG context:	936
Total methylated C's in CHH context:	31250
Total methylated C's in Unknown context:	409

Total unmethylated C's in CpG context:	29821
Total unmethylated C's in CHG context:	42819
Total unmethylated C's in CHH context:	150442
Total unmethylated C's in Unknown context:	899

C methylated in CpG context:	8.2%
C methylated in CHG context:	2.1%
C methylated in CHH context:	17.2%
C methylated in unknown context (CN or CHN):	31.3%


Bismark completed in 0d 0h 1m 10s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH05_21_S10_L001_R1_001_val_1.fq.gz to CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH05_21_S10_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH05_21_S10_L001_R2_001_val_2.fq.gz to CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH05_21_S10_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:4980:1367_1:N:0:NAGCTT/1	99	contig_633_pilon__uns_CT_converted	225033	42	75M	=	225033	-75	TTTTTGGGGTGGGGATTTTGATTATGTAGTTTGTATTTGTTATTAAGAAATGGGGATATTGTGTTAATGGGTTGA	JJJJJJJJJJJJJJJJ<AJJJJJJJJJJJJJJJJJJJ-FJJFFJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJ	AS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:75	YS:i:-6	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:4980:1367_2:N:0:NAGCTT/2	147	contig_633_pilon__uns_CT_converted	225033	42	75M	=	225033	-75	TTTTTGGGGTGGGGATTTTGATTATGTAGTTTGTATTTGTTATTAAGAAATGGGTATATTGTGTTAATGGGTTGA	JJJJJJFFAAJFFJAJJJ-F-JFFFJJJJJJJFFAJJAJJJAJ<--<-<7JFFF--JFJJJJJJJFJJAJJJJJJ	AS:i:-6	XN:i:0	XM:i:1	XO:i:0	XG:i:0	NM:i:1	MD:Z:54G20	YS:i:0	YT:Z:CP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:4980:1367_1:N:0:NAGCTT/1	77	*	0	0	*	*	0	0	TTTTTGGGGTGGGGATTTTGATTATGTAGTTTGTATTTGTTATTAAGAAATGGGGATATTGTGTTAATGGGTTGA	JJJJJJJJJJJJJJJJ<AJJJJJJJJJJJJJJJJJJJ-FJJFFJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:4980:1367_2:N:0:NAGCTT/2	141	*	0	0	*	*	0	0	TCAACCCATTAACACAATATACCCATTTCTTAATAACAAATACAAACTACATAATCAAAATCCCCACCCCAAAAA	JJJJJJAJJFJJJJJJJFJ--FFFJ7<-<--<JAJJJAJJAFFJJJJJJJFFFJ-F-JJJAJFFJAAFFJJJJJJ	YT:Z:UP

>>> Writing bisulfite mapping results to CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28467 (71.17%) aligned concordantly 0 times
    4589 (11.47%) aligned concordantly exactly 1 time
    6944 (17.36%) aligned concordantly >1 times
28.83% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28175 (70.44%) aligned concordantly 0 times
    4784 (11.96%) aligned concordantly exactly 1 time
    7041 (17.60%) aligned concordantly >1 times
29.56% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH05_21_S10_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_21_S10_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11495
Mapping efficiency:	28.7%

Sequence pairs with no alignments under any condition:	23734
Sequence pairs did not map uniquely:	4771
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5900	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5595	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	391393

Total methylated C's in CpG context:	35981
Total methylated C's in CHG context:	2219
Total methylated C's in CHH context:	49721
Total methylated C's in Unknown context:	588

Total unmethylated C's in CpG context:	19350
Total unmethylated C's in CHG context:	74795
Total unmethylated C's in CHH context:	209327
Total unmethylated C's in Unknown context:	1278

C methylated in CpG context:	65.0%
C methylated in CHG context:	2.9%
C methylated in CHH context:	19.2%
C methylated in unknown context (CN or CHN):	31.5%


Bismark completed in 0d 0h 1m 11s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH05_24_S11_L001_R1_001_val_1.fq.gz to CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH05_24_S11_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH05_24_S11_L001_R2_001_val_2.fq.gz to CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH05_24_S11_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2483:1367_1:N:0:NGCTAC/1	99	PGA_scaffold43__161_contigs__length_26349757_CT_converted	22213893	8	103M	=	22213873	-123	TTTTTTATTTAAAAATTTTGGGATTAAGATATTTTTTGGATTTTAGAATTAAATATTTTTAGTGTAGATTTTTTAGTGTAGATTTTAATGTTTTTTAAATAAA	JJJJJJJJJJJJJJJJ-7JJJJJJJJJJJJJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJ	AS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:103	YS:i:-76	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:2483:1367_2:N:0:NGCTAC/2	147	PGA_scaffold43__161_contigs__length_26349757_CT_converted	22213873	8	15M3I3M3I105M	=	22213893	123	GTTTTTTTTTTGGTTTGGGTTGTAAATTTTTTATTTAATAATTTTGGGATTAAGATATTTTTTGGATTTTAGAATTAAATATTTTTAGTGTAGATTTTTTAGTGTAGATTTTAATGTTTTTTAAATAAA	7---77-<7-A7-7-AJJFF-7---7AFJFFF-F<FF7-A-JFFJJAFA-AAAA-F-JJJFJF7FAJJJFFA<F7<--JJJJAF<A-7<JJFAAJFF<AJJA-F--F-AJJJJFJJJAJJJFFJFJJJJ	AS:i:-76	XN:i:0	XM:i:8	XO:i:2	XG:i:6	NM:i:14	MD:Z:0A3A0A0A1A1A5A15A90	YS:i:0	YT:Z:CP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2483:1367_1:N:0:NGCTAC/1	77	*	0	0	*	*	0	0	TTTTTTATTTAAAAATTTTGGGATTAAGATATTTTTTGGATTTTAGAATTAAATATTTTTAGTGTAGATTTTTTAGTGTAGATTTTAATGTTTTTTAAATAAA	JJJJJJJJJJJJJJJJ-7JJJJJJJJJJJJJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2483:1367_2:N:0:NGCTAC/2	141	*	0	0	*	*	0	0	TTTATTTAAAAAACATTAAAATCTACACTAAAAAATCTACACTAAAAATATTTAATTCTAAAATCCAAAAAATATCTTAATCCCAAAATTATTAAATAAAAAATTTACAACCCAAACCAAAAAAAAAAC	JJJJFJFFJJJAJJJFJJJJA-F--F-AJJA<FFJAAFJJ<7-A<FAJJJJ--<7F<AFFJJJAF7FJFJJJ-F-AAAA-AFAJJFFJ-A-7FF<F-FFFJFA7---7-FFJJA-7-7A-7<-77---7	YT:Z:UP

>>> Writing bisulfite mapping results to CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R2_001_val_2.fq.gz
Chromosomal sequence could not be extracted for	K00337:412:HKTCJBBXY:1:1101:19948:10809_1:N:0:GGCTAC	contig_803_pilon__uns	216614
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27108 (67.77%) aligned concordantly 0 times
    4941 (12.35%) aligned concordantly exactly 1 time
    7951 (19.88%) aligned concordantly >1 times
32.23% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27142 (67.86%) aligned concordantly 0 times
    4976 (12.44%) aligned concordantly exactly 1 time
    7882 (19.70%) aligned concordantly >1 times
32.15% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH05_24_S11_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH05_24_S11_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	12165
Mapping efficiency:	30.4%

Sequence pairs with no alignments under any condition:	22303
Sequence pairs did not map uniquely:	5532
Sequence pairs which were discarded because genomic sequence could not be extracted:	1

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	6060	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	6104	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	377297

Total methylated C's in CpG context:	45207
Total methylated C's in CHG context:	2534
Total methylated C's in CHH context:	47787
Total methylated C's in Unknown context:	638

Total unmethylated C's in CpG context:	16846
Total unmethylated C's in CHG context:	75176
Total unmethylated C's in CHH context:	189747
Total unmethylated C's in Unknown context:	1186

C methylated in CpG context:	72.9%
C methylated in CHG context:	3.3%
C methylated in CHH context:	20.1%
C methylated in unknown context (CN or CHN):	35.0%


Bismark completed in 0d 0h 1m 10s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH07_06_S12_L001_R1_001_val_1.fq.gz to CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH07_06_S12_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH07_06_S12_L001_R2_001_val_2.fq.gz to CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH07_06_S12_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2686:1367_1:N:0:NGTCAA/1	77	*	0	0	*	*	0	0	ATTTTGATTATTTAATATTTAATATTTTTATTATTTAATTATTTATAAATAATAATAATTTAAAAAT	JJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJFJFJJFFJJ<JFJAFJJJJJJJJJJJFJFF	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2686:1367_2:N:0:NGTCAA/2	141	*	0	0	*	*	0	0	ATTTTTAAATTATTATTATTTATAAATAATTAAATAATAAAAATATTAAATATTAAATAATCAAAAT	FF--A<AJ<FA--AJFJJJAJFAAFJF-AA-7<F-AA<<AFJJ7F77AJAFF-77F<FFAFF<7FJF	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2686:1367_1:N:0:NGTCAA/1	77	*	0	0	*	*	0	0	ATTTTGATTATTTAATATTTAATATTTTTATTATTTAATTATTTATAAATAATAATAATTTAAAAAT	JJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJFJFJJFFJJ<JFJAFJJJJJJJJJJJFJFF	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2686:1367_2:N:0:NGTCAA/2	141	*	0	0	*	*	0	0	ATTTTTAAATTATTATTATTTATAAATAATTAAATAATAAAAATATTAAATATTAAATAATCAAAAT	FF--A<AJ<FA--AJFJJJAJFAAFJF-AA-7<F-AA<<AFJJ7F77AJAFF-77F<FFAFF<7FJF	YT:Z:UP

>>> Writing bisulfite mapping results to CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28910 (72.28%) aligned concordantly 0 times
    4532 (11.33%) aligned concordantly exactly 1 time
    6558 (16.39%) aligned concordantly >1 times
27.73% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28907 (72.27%) aligned concordantly 0 times
    4589 (11.47%) aligned concordantly exactly 1 time
    6504 (16.26%) aligned concordantly >1 times
27.73% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH07_06_S12_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_06_S12_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	10961
Mapping efficiency:	27.4%

Sequence pairs with no alignments under any condition:	24453
Sequence pairs did not map uniquely:	4586
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5491	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5470	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	384102

Total methylated C's in CpG context:	41302
Total methylated C's in CHG context:	2207
Total methylated C's in CHH context:	40387
Total methylated C's in Unknown context:	604

Total unmethylated C's in CpG context:	20246
Total unmethylated C's in CHG context:	73378
Total unmethylated C's in CHH context:	206582
Total unmethylated C's in Unknown context:	1290

C methylated in CpG context:	67.1%
C methylated in CHG context:	2.9%
C methylated in CHH context:	16.4%
C methylated in unknown context (CN or CHN):	31.9%


Bismark completed in 0d 0h 1m 8s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH07_11_S13_L001_R1_001_val_1.fq.gz to CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH07_11_S13_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH07_11_S13_L001_R2_001_val_2.fq.gz to CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH07_11_S13_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:1773:1367_1:N:0:NGTTCC/1	77	*	0	0	*	*	0	0	GTTGGTGGATTTTTAGTTTGTATTTGTTG	JJJJJJJJJJJJJJJFAAJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:1773:1367_2:N:0:NGTTCC/2	141	*	0	0	*	*	0	0	CAACTAATACAAACTAAAAATCCACCAAC	JJ7F-FF<FJFF7FJ7<<F77FF--A7A7	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:1773:1367_1:N:0:NGTTCC/1	77	*	0	0	*	*	0	0	GTTGGTGGATTTTTAGTTTGTATTTGTTG	JJJJJJJJJJJJJJJFAAJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:1773:1367_2:N:0:NGTTCC/2	141	*	0	0	*	*	0	0	CAACTAATACAAACTAAAAATCCACCAAC	JJ7F-FF<FJFF7FJ7<<F77FF--A7A7	YT:Z:UP

>>> Writing bisulfite mapping results to CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    30493 (76.23%) aligned concordantly 0 times
    2999 (7.50%) aligned concordantly exactly 1 time
    6508 (16.27%) aligned concordantly >1 times
23.77% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    30499 (76.25%) aligned concordantly 0 times
    3075 (7.69%) aligned concordantly exactly 1 time
    6426 (16.07%) aligned concordantly >1 times
23.75% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH07_11_S13_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_11_S13_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	7412
Mapping efficiency:	18.5%

Sequence pairs with no alignments under any condition:	27584
Sequence pairs did not map uniquely:	5004
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	3797	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	3615	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	252312

Total methylated C's in CpG context:	2793
Total methylated C's in CHG context:	1416
Total methylated C's in CHH context:	32894
Total methylated C's in Unknown context:	505

Total unmethylated C's in CpG context:	28059
Total unmethylated C's in CHG context:	41207
Total unmethylated C's in CHH context:	145943
Total unmethylated C's in Unknown context:	966

C methylated in CpG context:	9.1%
C methylated in CHG context:	3.3%
C methylated in CHH context:	18.4%
C methylated in unknown context (CN or CHN):	34.3%


Bismark completed in 0d 0h 1m 3s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH07_24_S14_L001_R1_001_val_1.fq.gz to CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH07_24_S14_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH07_24_S14_L001_R2_001_val_2.fq.gz to CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH07_24_S14_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:3681:1367_1:N:0:NTGTCA/1	99	contig_6135_pilon__uns_CT_converted	3973	1	59M	=	3973	-59	GTTAGGTTAGGTTAGGTAAGGTTAGGTAAGGTTAGGTTAGGTTATGTAAGGTTAGGTTA	JFFJJJFJJJJFJJJFFFJJJFJJJJFFJJJJJJJJFAJJJJFJJFJJJJJFJJJJFJJ	AS:i:0	XS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:59	YS:i:-6	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:3681:1367_2:N:0:NTGTCA/2	147	contig_6135_pilon__uns_CT_converted	3973	1	59M	=	3973	-59	GTTAGGTTAGGTTAGGTAAGGTTAGGTAAGGTTAGGTTAGGTTATGTGAGGTTAGGTTA	JJF7JJFJAFJJA-FJA7-JJA-AJJ<--JJJJJJJJFAJJJJFFJ<-FJJFF<JJJJJ	AS:i:-6	XS:i:-6	XN:i:0	XM:i:1	XO:i:0	XG:i:0	NM:i:1	MD:Z:47A11	YS:i:0	YT:Z:CP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:3681:1367_1:N:0:NTGTCA/1	83	contig_3410_pilon__uns_GA_converted	1925	1	59M	=	1925	-59	TAACCTAACCTTACATAACCTAACCTAACCTTACCTAACCTTACCTAACCTAACCTAAC	JJFJJJJFJJJJJFJJFJJJJAFJJJJJJJJFFJJJJFJJJFFFJJJFJJJJFJJJFFJ	AS:i:0	XS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:59	YS:i:-6	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:3681:1367_2:N:0:NTGTCA/2	163	contig_3410_pilon__uns_GA_converted	1925	1	59M	=	1925	-59	TAACCTAACCTCACATAACCTAACCTAACCTTACCTAACCTTACCTAACCTAACCTAAC	JJJJJ<FFJJF-<JFFJJJJAFJJJJJJJJ--<JJA-AJJ-7AJF-AJJFAJFJJ7FJJ	AS:i:-6	XS:i:-6	XN:i:0	XM:i:1	XO:i:0	XG:i:0	NM:i:1	MD:Z:11T47	YS:i:0	YT:Z:CP

>>> Writing bisulfite mapping results to CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R2_001_val_2.fq.gz
Chromosomal sequence could not be extracted for	K00337:412:HKTCJBBXY:1:1101:30289:4040_1:N:0:ATGTCA	contig_3489_pilon__uns	2
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28337 (70.84%) aligned concordantly 0 times
    3367 (8.42%) aligned concordantly exactly 1 time
    8296 (20.74%) aligned concordantly >1 times
29.16% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28342 (70.86%) aligned concordantly 0 times
    3428 (8.57%) aligned concordantly exactly 1 time
    8230 (20.57%) aligned concordantly >1 times
29.14% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH07_24_S14_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH07_24_S14_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	8340
Mapping efficiency:	20.9%

Sequence pairs with no alignments under any condition:	25093
Sequence pairs did not map uniquely:	6567
Sequence pairs which were discarded because genomic sequence could not be extracted:	1

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	4168	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	4171	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	275227

Total methylated C's in CpG context:	2517
Total methylated C's in CHG context:	1156
Total methylated C's in CHH context:	34682
Total methylated C's in Unknown context:	562

Total unmethylated C's in CpG context:	28233
Total unmethylated C's in CHG context:	40274
Total unmethylated C's in CHH context:	168365
Total unmethylated C's in Unknown context:	1195

C methylated in CpG context:	8.2%
C methylated in CHG context:	2.8%
C methylated in CHH context:	17.1%
C methylated in unknown context (CN or CHN):	32.0%


Bismark completed in 0d 0h 1m 10s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH09_02_S15_L001_R1_001_val_1.fq.gz to CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH09_02_S15_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH09_02_S15_L001_R2_001_val_2.fq.gz to CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH09_02_S15_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2341:1367_1:N:0:NCGTCC/1	77	*	0	0	*	*	0	0	TTTATAATGTATAGTTTTAGGAATTTTGGTTAAAATTTTAATGGGTGGTAAATGTGAAAAATTTGTAATGTTTTTTTTTGTTTGATTTTAATTTTTTGATATTTATTTTTTTGATTATAGATGTTGTATTT	JJJJJJJJJJJJJJJJ-JFJJJJJJJJJJJJJJJJJJFJJJJFJJJJFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2341:1367_2:N:0:NCGTCC/2	141	*	0	0	*	*	0	0	CAACATCAACAAAACAAACATCTAAAAAAACCACAAAAAAAAATATAAAAAAAATACAACATCTATAAACAAAAAAATAAATATCAAAAAAATAAAAACAAACAAAAAAAAACATTACAAAAAAAACACA	JJJF7--<FFJ<J--FJJJF-F---FJ<AJAAAJJJ--A7A-7---<FJJJJJJ<FJ7F7F-7-<-<A-77AAJJFJ-FJFAJ-77-AFJJ--7F--77-<FJJJ--77FFFA---7F-FJ<-7---7--	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2341:1367_1:N:0:NCGTCC/1	77	*	0	0	*	*	0	0	TTTATAATGTATAGTTTTAGGAATTTTGGTTAAAATTTTAATGGGTGGTAAATGTGAAAAATTTGTAATGTTTTTTTTTGTTTGATTTTAATTTTTTGATATTTATTTTTTTGATTATAGATGTTGTATTT	JJJJJJJJJJJJJJJJ-JFJJJJJJJJJJJJJJJJJJFJJJJFJJJJFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2341:1367_2:N:0:NCGTCC/2	141	*	0	0	*	*	0	0	CAACATCAACAAAACAAACATCTAAAAAAACCACAAAAAAAAATATAAAAAAAATACAACATCTATAAACAAAAAAATAAATATCAAAAAAATAAAAACAAACAAAAAAAAACATTACAAAAAAAACACA	JJJF7--<FFJ<J--FJJJF-F---FJ<AJAAAJJJ--A7A-7---<FJJJJJJ<FJ7F7F-7-<-<A-77AAJJFJ-FJFAJ-77-AFJJ--7F--77-<FJJJ--77FFFA---7F-FJ<-7---7--	YT:Z:UP

>>> Writing bisulfite mapping results to CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27111 (67.78%) aligned concordantly 0 times
    4741 (11.85%) aligned concordantly exactly 1 time
    8148 (20.37%) aligned concordantly >1 times
32.22% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27124 (67.81%) aligned concordantly 0 times
    4741 (11.85%) aligned concordantly exactly 1 time
    8135 (20.34%) aligned concordantly >1 times
32.19% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH09_02_S15_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_02_S15_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11652
Mapping efficiency:	29.1%

Sequence pairs with no alignments under any condition:	22565
Sequence pairs did not map uniquely:	5783
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5772	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5880	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	344906

Total methylated C's in CpG context:	35429
Total methylated C's in CHG context:	2289
Total methylated C's in CHH context:	46367
Total methylated C's in Unknown context:	802

Total unmethylated C's in CpG context:	15640
Total unmethylated C's in CHG context:	61851
Total unmethylated C's in CHH context:	183330
Total unmethylated C's in Unknown context:	1440

C methylated in CpG context:	69.4%
C methylated in CHG context:	3.6%
C methylated in CHH context:	20.2%
C methylated in unknown context (CN or CHN):	35.8%


Bismark completed in 0d 0h 1m 11s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH09_13_S16_L001_R1_001_val_1.fq.gz to CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH09_13_S16_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH09_13_S16_L001_R2_001_val_2.fq.gz to CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH09_13_S16_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:1813:1367_1:N:0:NTCCGC/1	77	*	0	0	*	*	0	0	AAATTAAATAATTTAATTAATTTATTAAAATA	JJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:1813:1367_2:N:0:NTCCGC/2	141	*	0	0	*	*	0	0	TATTTTAATAAAATAATTAAATTA	FF-A-<7<<-FF-<-FFFJF---<	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:1813:1367_1:N:0:NTCCGC/1	77	*	0	0	*	*	0	0	AAATTAAATAATTTAATTAATTTATTAAAATA	JJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:1813:1367_2:N:0:NTCCGC/2	141	*	0	0	*	*	0	0	TATTTTAATAAAATAATTAAATTA	FF-A-<7<<-FF-<-FFFJF---<	YT:Z:UP

>>> Writing bisulfite mapping results to CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27292 (68.23%) aligned concordantly 0 times
    4876 (12.19%) aligned concordantly exactly 1 time
    7832 (19.58%) aligned concordantly >1 times
31.77% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27246 (68.11%) aligned concordantly 0 times
    4858 (12.14%) aligned concordantly exactly 1 time
    7896 (19.74%) aligned concordantly >1 times
31.89% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH09_13_S16_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_13_S16_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11972
Mapping efficiency:	29.9%

Sequence pairs with no alignments under any condition:	22519
Sequence pairs did not map uniquely:	5509
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	6003	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5969	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	440645

Total methylated C's in CpG context:	25717
Total methylated C's in CHG context:	2097
Total methylated C's in CHH context:	47452
Total methylated C's in Unknown context:	663

Total unmethylated C's in CpG context:	25259
Total unmethylated C's in CHG context:	74135
Total unmethylated C's in CHH context:	265985
Total unmethylated C's in Unknown context:	1407

C methylated in CpG context:	50.4%
C methylated in CHG context:	2.8%
C methylated in CHH context:	15.1%
C methylated in unknown context (CN or CHN):	32.0%


Bismark completed in 0d 0h 1m 12s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH09_28_S17_L001_R1_001_val_1.fq.gz to CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH09_28_S17_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH09_28_S17_L001_R2_001_val_2.fq.gz to CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH09_28_S17_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:5122:1367_1:N:0:NTGAAA/1	77	*	0	0	*	*	0	0	AAATTTGTAAAATTTGATATATTAAATTTTTTTTTTTTTTTTTAATAAATATAA	JJJJJJJJJJJJJJJ<JJJFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:5122:1367_2:N:0:NTGAAA/2	141	*	0	0	*	*	0	0	TTATATTTATTAAAAAAAAAAAAAAAAATTTAATATATCAAATTATACAAATTTTTTTATAAAAAAATCTTAAAAACAACATATAAAAAAAAAATATAAATCTCAATAATCACCATATCATCAAAAAAAAA	FJ-F<--<F7F--7FFAFJJAAJ--F--AFJJFAFJF-AFA7A<--7AFAAJJJ-FFJ-F<-F--A-7F--777--FF-777-7<-<<AFFJJJJF7--7--777--7-7FFFJ-----A---7--77F-F	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:5122:1367_1:N:0:NTGAAA/1	77	*	0	0	*	*	0	0	AAATTTGTAAAATTTGATATATTAAATTTTTTTTTTTTTTTTTAATAAATATAA	JJJJJJJJJJJJJJJ<JJJFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:5122:1367_2:N:0:NTGAAA/2	141	*	0	0	*	*	0	0	TTATATTTATTAAAAAAAAAAAAAAAAATTTAATATATCAAATTATACAAATTTTTTTATAAAAAAATCTTAAAAACAACATATAAAAAAAAAATATAAATCTCAATAATCACCATATCATCAAAAAAAAA	FJ-F<--<F7F--7FFAFJJAAJ--F--AFJJFAFJF-AFA7A<--7AFAAJJJ-FFJ-F<-F--A-7F--777--FF-777-7<-<<AFFJJJJF7--7--777--7-7FFFJ-----A---7--77F-F	YT:Z:UP

>>> Writing bisulfite mapping results to CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    29260 (73.15%) aligned concordantly 0 times
    4844 (12.11%) aligned concordantly exactly 1 time
    5896 (14.74%) aligned concordantly >1 times
26.85% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    29237 (73.09%) aligned concordantly 0 times
    4869 (12.17%) aligned concordantly exactly 1 time
    5894 (14.73%) aligned concordantly >1 times
26.91% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH09_28_S17_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH09_28_S17_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11389
Mapping efficiency:	28.5%

Sequence pairs with no alignments under any condition:	24502
Sequence pairs did not map uniquely:	4109
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5707	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5682	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	390514

Total methylated C's in CpG context:	40925
Total methylated C's in CHG context:	2928
Total methylated C's in CHH context:	39564
Total methylated C's in Unknown context:	580

Total unmethylated C's in CpG context:	18433
Total unmethylated C's in CHG context:	76034
Total unmethylated C's in CHH context:	212630
Total unmethylated C's in Unknown context:	1250

C methylated in CpG context:	68.9%
C methylated in CHG context:	3.7%
C methylated in CHH context:	15.7%
C methylated in unknown context (CN or CHN):	31.7%


Bismark completed in 0d 0h 1m 0s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH10_01_S18_L001_R1_001_val_1.fq.gz to CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH10_01_S18_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH10_01_S18_L001_R2_001_val_2.fq.gz to CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH10_01_S18_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2838:1384_1:N:0:NTTTCG/1	77	*	0	0	*	*	0	0	ATTAAAAATTTTATTATATAATTTAATAATAAAATTTTTTTAATAA	JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJAFJJ-FJ7F	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2838:1384_2:N:0:NTTTCG/2	141	*	0	0	*	*	0	0	TTATTAAAAAAATTTTATTATAAAATTATAAAATAAATTTTAAAAT	<---<<<FJ--A<--FA7-F--7FF----<-7A-AJF------<A7	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2838:1384_1:N:0:NTTTCG/1	77	*	0	0	*	*	0	0	ATTAAAAATTTTATTATATAATTTAATAATAAAATTTTTTTAATAA	JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJAFJJ-FJ7F	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2838:1384_2:N:0:NTTTCG/2	141	*	0	0	*	*	0	0	TTATTAAAAAAATTTTATTATAAAATTATAAAATAAATTTTAAAAT	<---<<<FJ--A<--FA7-F--7FF----<-7A-AJF------<A7	YT:Z:UP

>>> Writing bisulfite mapping results to CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28389 (70.97%) aligned concordantly 0 times
    4884 (12.21%) aligned concordantly exactly 1 time
    6727 (16.82%) aligned concordantly >1 times
29.03% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    28383 (70.96%) aligned concordantly 0 times
    4949 (12.37%) aligned concordantly exactly 1 time
    6668 (16.67%) aligned concordantly >1 times
29.04% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH10_01_S18_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_01_S18_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11687
Mapping efficiency:	29.2%

Sequence pairs with no alignments under any condition:	23634
Sequence pairs did not map uniquely:	4679
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5875	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5812	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	383896

Total methylated C's in CpG context:	42532
Total methylated C's in CHG context:	2490
Total methylated C's in CHH context:	38281
Total methylated C's in Unknown context:	589

Total unmethylated C's in CpG context:	16123
Total unmethylated C's in CHG context:	74868
Total unmethylated C's in CHH context:	209602
Total unmethylated C's in Unknown context:	1273

C methylated in CpG context:	72.5%
C methylated in CHG context:	3.2%
C methylated in CHH context:	15.4%
C methylated in unknown context (CN or CHN):	31.6%


Bismark completed in 0d 0h 1m 1s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH10_08_S19_L001_R1_001_val_1.fq.gz to CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH10_08_S19_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH10_08_S19_L001_R2_001_val_2.fq.gz to CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH10_08_S19_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2564:1367_1:N:0:NGTACG/1	77	*	0	0	*	*	0	0	GTTATATTATTATGTATATAAAATATAATAATAAAATAATTATATATTTTATATTTAATATTAATTATATATATAATATTTTATTTAATATTTTTTTGAATATTATTGTTTTTTAATATATTTATAAAAAA	JJFJJJJJFJJ<F-<F-<FFJJJFJJJJJJJFJJJJA-F--F-FFJ-AAFJJJFAFJJFJ<AJJJJFAJJJJJJJJJJJJJFJ-<AJJJJJJFFJJJJFJJJJJJJJJJJFJJF<FFFFA-<FAJFAFFJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2564:1367_2:N:0:NGTACG/2	141	*	0	0	*	*	0	0	CCCATAAACCACAATTAAATAATATAAAATAAATTTATTATAAACAAAAATATAAAATAAATTAATTTTTTATAAATAAATTAAAAAACAATAATAAACAAAAAAATAATAAATAAAAAAAAAAAAATAAA	FF<JAJFJJJJ<-7<7AFJ-77<7<JJ-F<<-A--<--<7--<FA-AJ<<FF-F<AJ-A-77-7A-A-7-AFJAA-77-<F<-7AF-7AJJJ7F-A--7-AA-<7-77<<<<---<-AAF--7---77A--	YT:Z:UP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:2564:1367_1:N:0:NGTACG/1	77	*	0	0	*	*	0	0	GTTATATTATTATGTATATAAAATATAATAATAAAATAATTATATATTTTATATTTAATATTAATTATATATATAATATTTTATTTAATATTTTTTTGAATATTATTGTTTTTTAATATATTTATAAAAAA	JJFJJJJJFJJ<F-<F-<FFJJJFJJJJJJJFJJJJA-F--F-FFJ-AAFJJJFAFJJFJ<AJJJJFAJJJJJJJJJJJJJFJ-<AJJJJJJFFJJJJFJJJJJJJJJJJFJJF<FFFFA-<FAJFAFFJJ	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:2564:1367_2:N:0:NGTACG/2	141	*	0	0	*	*	0	0	CCCATAAACCACAATTAAATAATATAAAATAAATTTATTATAAACAAAAATATAAAATAAATTAATTTTTTATAAATAAATTAAAAAACAATAATAAACAAAAAAATAATAAATAAAAAAAAAAAAATAAA	FF<JAJFJJJJ<-7<7AFJ-77<7<JJ-F<<-A--<--<7--<FA-AJ<<FF-F<AJ-A-77-7A-A-7-AFJAA-77-<F<-7AF-7AJJJ7F-A--7-AA-<7-77<<<<---<-AAF--7---77A--	YT:Z:UP

>>> Writing bisulfite mapping results to CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27945 (69.86%) aligned concordantly 0 times
    3567 (8.92%) aligned concordantly exactly 1 time
    8488 (21.22%) aligned concordantly >1 times
30.14% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27668 (69.17%) aligned concordantly 0 times
    3640 (9.10%) aligned concordantly exactly 1 time
    8692 (21.73%) aligned concordantly >1 times
30.83% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH10_08_S19_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_08_S19_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	9606
Mapping efficiency:	24.0%

Sequence pairs with no alignments under any condition:	24178
Sequence pairs did not map uniquely:	6216
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	4706	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	4900	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	277885

Total methylated C's in CpG context:	11033
Total methylated C's in CHG context:	1998
Total methylated C's in CHH context:	68316
Total methylated C's in Unknown context:	794

Total unmethylated C's in CpG context:	21736
Total unmethylated C's in CHG context:	44178
Total unmethylated C's in CHH context:	130624
Total unmethylated C's in Unknown context:	1212

C methylated in CpG context:	33.7%
C methylated in CHG context:	4.3%
C methylated in CHH context:	34.3%
C methylated in unknown context (CN or CHN):	39.6%


Bismark completed in 0d 0h 1m 12s

====================
Bismark run complete
====================

Use of uninitialized value $path_to_bowtie in concatenation (.) or string at /gscratch/srlab/programs/Bismark-0.21.0/bismark line 6893.
Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.1.0])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.4/bin/samtools'
Reference genome folder provided is /gscratch/srlab/sr320/data/dumoar/sc-con-genome/	(absolute path is '/gscratch/srlab/sr320/data/dumoar/sc-con-genome/)'
FastQ format assumed (by default)
Processing sequences up to read no. 40000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4
Each Bowtie 2 instance is going to be run with 40 threads. Please monitor performance closely and tune down if necessary!

Input files to be analysed (in current folder '/gscratch/scrubbed/sr320/031223-scont-17'):
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R1_001_val_1.fq.gz
/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R2_001_val_2.fq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Summary of all aligner options:	-q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500
Current working directory is: /gscratch/scrubbed/sr320/031223-scont-17

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sr320/data/dumoar/sc-con-genome/

chr PGA_scaffold0__40_contigs__length_4818635 (4818635 bp)
chr PGA_scaffold1__111_contigs__length_23635802 (23635802 bp)
chr PGA_scaffold2__216_contigs__length_42616187 (42616187 bp)
chr PGA_scaffold3__77_contigs__length_22140449 (22140449 bp)
chr PGA_scaffold4__118_contigs__length_24133938 (24133938 bp)
chr PGA_scaffold5__54_contigs__length_17529967 (17529967 bp)
chr PGA_scaffold6__2_contigs__length_4500 (4500 bp)
chr PGA_scaffold7__77_contigs__length_16129408 (16129408 bp)
chr PGA_scaffold8__70_contigs__length_6254265 (6254265 bp)
chr PGA_scaffold9__2_contigs__length_6774 (6774 bp)
chr PGA_scaffold10__58_contigs__length_8083807 (8083807 bp)
chr PGA_scaffold11__78_contigs__length_11409253 (11409253 bp)
chr PGA_scaffold12__214_contigs__length_38711105 (38711105 bp)
chr PGA_scaffold13__56_contigs__length_10281103 (10281103 bp)
chr PGA_scaffold14__49_contigs__length_6382615 (6382615 bp)
chr PGA_scaffold15__74_contigs__length_14466968 (14466968 bp)
chr PGA_scaffold16__99_contigs__length_13714835 (13714835 bp)
chr PGA_scaffold17__171_contigs__length_27881435 (27881435 bp)
chr PGA_scaffold18__98_contigs__length_15388888 (15388888 bp)
chr PGA_scaffold19__65_contigs__length_13296201 (13296201 bp)
chr PGA_scaffold20__42_contigs__length_7444180 (7444180 bp)
chr PGA_scaffold21__67_contigs__length_16858916 (16858916 bp)
chr PGA_scaffold22__59_contigs__length_10008237 (10008237 bp)
chr PGA_scaffold23__65_contigs__length_9586800 (9586800 bp)
chr PGA_scaffold24__25_contigs__length_9615596 (9615596 bp)
chr PGA_scaffold25__121_contigs__length_9021638 (9021638 bp)
chr PGA_scaffold26__34_contigs__length_3174094 (3174094 bp)
chr PGA_scaffold27__24_contigs__length_4511419 (4511419 bp)
chr PGA_scaffold28__73_contigs__length_10794191 (10794191 bp)
chr PGA_scaffold29__63_contigs__length_7458616 (7458616 bp)
chr PGA_scaffold30__53_contigs__length_3533588 (3533588 bp)
chr PGA_scaffold31__35_contigs__length_1951197 (1951197 bp)
chr PGA_scaffold32__48_contigs__length_8091588 (8091588 bp)
chr PGA_scaffold33__68_contigs__length_5591008 (5591008 bp)
chr PGA_scaffold34__18_contigs__length_2048619 (2048619 bp)
chr PGA_scaffold35__36_contigs__length_7416912 (7416912 bp)
chr PGA_scaffold36__50_contigs__length_8312113 (8312113 bp)
chr PGA_scaffold37__114_contigs__length_22981779 (22981779 bp)
chr PGA_scaffold38__30_contigs__length_10707134 (10707134 bp)
chr PGA_scaffold39__82_contigs__length_19157343 (19157343 bp)
chr PGA_scaffold40__81_contigs__length_9975379 (9975379 bp)
chr PGA_scaffold41__67_contigs__length_15779270 (15779270 bp)
chr PGA_scaffold42__119_contigs__length_25812110 (25812110 bp)
chr PGA_scaffold43__161_contigs__length_26349757 (26349757 bp)
chr PGA_scaffold44__101_contigs__length_25971783 (25971783 bp)
chr PGA_scaffold45__51_contigs__length_13476971 (13476971 bp)
chr PGA_scaffold46__73_contigs__length_12693875 (12693875 bp)
chr PGA_scaffold47__164_contigs__length_21858264 (21858264 bp)
chr PGA_scaffold48__117_contigs__length_14149252 (14149252 bp)
chr contig_1001_pilon__uns (24935 bp)
chr contig_1002_pilon__uns (4698 bp)
chr contig_1008_pilon__uns (57313 bp)
chr contig_1013_pilon__uns (9111 bp)
chr contig_1014_pilon__uns (44146 bp)
chr contig_1015_pilon__uns (40906 bp)
chr contig_1019_pilon__uns (8123 bp)
chr contig_1020_pilon__uns (6849 bp)
chr contig_1023_pilon__uns (6751 bp)
chr contig_1027_pilon__uns (11130 bp)
chr contig_102_pilon__uns (10606 bp)
chr contig_1031_pilon__uns (12490 bp)
chr contig_1036_pilon__uns (13977 bp)
chr contig_103_pilon__uns (61341 bp)
chr contig_1041_pilon__uns (4253 bp)
chr contig_1042_pilon__uns (11130 bp)
chr contig_1043_pilon__uns (5439 bp)
chr contig_1044_pilon__uns (1321 bp)
chr contig_1045_pilon__uns (47018 bp)
chr contig_1046_pilon__uns (1795 bp)
chr contig_1049_pilon__uns (8757 bp)
chr contig_1052_pilon__uns (5026 bp)
chr contig_1058_pilon___frag_2___debris__uns (1001 bp)
chr contig_1058_pilon___frag_4___debris__uns (1001 bp)
chr contig_1059_pilon__uns (7499 bp)
chr contig_1060_pilon__uns (7596 bp)
chr contig_1063_pilon__uns (198857 bp)
chr contig_106_pilon__uns (33964 bp)
chr contig_1070_pilon__uns (5084 bp)
chr contig_1071_pilon__uns (154066 bp)
chr contig_1089_pilon__uns (68393 bp)
chr contig_1091_pilon__uns (100377 bp)
chr contig_1094_pilon__uns (87194 bp)
chr contig_1098_pilon__uns (37678 bp)
chr contig_1114_pilon__uns (8538 bp)
chr contig_1117_pilon__uns (6576 bp)
chr contig_1118_pilon__uns (71347 bp)
chr contig_111_pilon__uns (9197 bp)
chr contig_1120_pilon__uns (58926 bp)
chr contig_1121_pilon___frag_1__uns (26964 bp)
chr contig_1121_pilon___frag_2___debris__uns (5001 bp)
chr contig_1121_pilon___frag_3__uns (119475 bp)
chr contig_1125_pilon__uns (66086 bp)
chr contig_1130_pilon__uns (6460 bp)
chr contig_1131_pilon__uns (987 bp)
chr contig_1134_pilon___frag_1__uns (61276 bp)
chr contig_1134_pilon___frag_2___debris__uns (5001 bp)
chr contig_1134_pilon___frag_3__uns (90619 bp)
chr contig_1139_pilon__uns (1537 bp)
chr contig_1143_pilon__uns (12495 bp)
chr contig_1144_pilon__uns (10336 bp)
chr contig_1148_pilon__uns (7436 bp)
chr contig_1152_pilon__uns (1633 bp)
chr contig_1153_pilon__uns (2819 bp)
chr contig_1155_pilon___frag_2___debris__uns (2001 bp)
chr contig_1155_pilon___frag_3__uns (60624 bp)
chr contig_1159_pilon__uns (16135 bp)
chr contig_117_pilon__uns (63296 bp)
chr contig_1180_pilon__uns (31661 bp)
chr contig_1183_pilon__uns (11012 bp)
chr contig_1184_pilon__uns (38297 bp)
chr contig_1200_pilon__uns (30844 bp)
chr contig_1203_pilon__uns (8323 bp)
chr contig_1206_pilon__uns (102534 bp)
chr contig_1207_pilon__uns (70975 bp)
chr contig_120_pilon__uns (29591 bp)
chr contig_1213_pilon__uns (40960 bp)
chr contig_1217_pilon__uns (8036 bp)
chr contig_121_pilon__uns (23633 bp)
chr contig_1223_pilon__uns (7293 bp)
chr contig_1225_pilon__uns (79347 bp)
chr contig_1226_pilon__uns (4219 bp)
chr contig_1229_pilon__uns (19835 bp)
chr contig_122_pilon__uns (76521 bp)
chr contig_1232_pilon__uns (1188 bp)
chr contig_1233_pilon___frag_1__uns (42810 bp)
chr contig_1233_pilon___frag_2___debris__uns (1001 bp)
chr contig_1233_pilon___frag_3__uns (30586 bp)
chr contig_1235_pilon__uns (24777 bp)
chr contig_1237_pilon__uns (7501 bp)
chr contig_1239_pilon__uns (21394 bp)
chr contig_1243_pilon__uns (13143 bp)
chr contig_1244_pilon__uns (46126 bp)
chr contig_1251_pilon__uns (24697 bp)
chr contig_1254_pilon__uns (138137 bp)
chr contig_1258_pilon__uns (43372 bp)
chr contig_1260_pilon__uns (1040 bp)
chr contig_126_pilon__uns (8704 bp)
chr contig_1271_pilon__uns (19214 bp)
chr contig_1274_pilon__uns (13789 bp)
chr contig_1276_pilon__uns (9825 bp)
chr contig_127_pilon__uns (58735 bp)
chr contig_1281_pilon__uns (9607 bp)
chr contig_1283_pilon__uns (6790 bp)
chr contig_128_pilon__uns (60259 bp)
chr contig_1291_pilon__uns (51069 bp)
chr contig_1293_pilon__uns (9825 bp)
chr contig_1301_pilon__uns (59436 bp)
chr contig_1303_pilon__uns (140324 bp)
chr contig_1304_pilon__uns (6151 bp)
chr contig_1307_pilon__uns (11511 bp)
chr contig_1308_pilon__uns (5667 bp)
chr contig_1315_pilon__uns (68888 bp)
chr contig_1318_pilon__uns (18219 bp)
chr contig_1325_pilon__uns (4706 bp)
chr contig_1329_pilon__uns (46824 bp)
chr contig_1330_pilon__uns (979 bp)
chr contig_1338_pilon__uns (53862 bp)
chr contig_1339_pilon__uns (4814 bp)
chr contig_1340_pilon__uns (1169 bp)
chr contig_1342_pilon__uns (53712 bp)
chr contig_1352_pilon__uns (6426 bp)
chr contig_1353_pilon__uns (3478 bp)
chr contig_1367_pilon__uns (3758 bp)
chr contig_1368_pilon__uns (6607 bp)
chr contig_1372_pilon___frag_1__uns (38395 bp)
chr contig_1372_pilon___frag_2___debris__uns (5001 bp)
chr contig_1372_pilon___frag_3__uns (129081 bp)
chr contig_1374_pilon__uns (21348 bp)
chr contig_1386_pilon__uns (79771 bp)
chr contig_1387_pilon__uns (7220 bp)
chr contig_1395_pilon__uns (53397 bp)
chr contig_1398_pilon__uns (6798 bp)
chr contig_1399_pilon__uns (93880 bp)
chr contig_1409_pilon__uns (10697 bp)
chr contig_140_pilon__uns (4078 bp)
chr contig_1410_pilon__uns (9598 bp)
chr contig_1415_pilon__uns (51250 bp)
chr contig_1419_pilon__uns (2382 bp)
chr contig_1422_pilon__uns (45990 bp)
chr contig_1424_pilon__uns (66490 bp)
chr contig_1426_pilon__uns (9478 bp)
chr contig_1427_pilon__uns (9638 bp)
chr contig_142_pilon__uns (108204 bp)
chr contig_1434_pilon__uns (78096 bp)
chr contig_1438_pilon__uns (14730 bp)
chr contig_1439_pilon__uns (119808 bp)
chr contig_1442_pilon__uns (127178 bp)
chr contig_1444_pilon__uns (45820 bp)
chr contig_1445_pilon__uns (66094 bp)
chr contig_1451_pilon__uns (4996 bp)
chr contig_1452_pilon__uns (7524 bp)
chr contig_1454_pilon__uns (2651 bp)
chr contig_145_pilon__uns (51762 bp)
chr contig_1460_pilon__uns (63184 bp)
chr contig_1461_pilon__uns (43545 bp)
chr contig_146_pilon__uns (27627 bp)
chr contig_1472_pilon__uns (29562 bp)
chr contig_1473_pilon__uns (1236 bp)
chr contig_1484_pilon__uns (49420 bp)
chr contig_1488_pilon__uns (17173 bp)
chr contig_1492_pilon__uns (81729 bp)
chr contig_1493_pilon__uns (4152 bp)
chr contig_1497_pilon__uns (129627 bp)
chr contig_1498_pilon__uns (1153 bp)
chr contig_1502_pilon__uns (129747 bp)
chr contig_1511_pilon__uns (5883 bp)
chr contig_1512_pilon__uns (7280 bp)
chr contig_1513_pilon__uns (48467 bp)
chr contig_1517_pilon__uns (64708 bp)
chr contig_1522_pilon__uns (4286 bp)
chr contig_1523_pilon__uns (611 bp)
chr contig_1525_pilon__uns (332504 bp)
chr contig_1527_pilon__uns (66946 bp)
chr contig_1528_pilon__uns (4219 bp)
chr contig_1530_pilon__uns (9690 bp)
chr contig_1533_pilon__uns (268396 bp)
chr contig_1537_pilon__uns (8915 bp)
chr contig_153_pilon__uns (3777 bp)
chr contig_1540_pilon__uns (95588 bp)
chr contig_1556_pilon__uns (192087 bp)
chr contig_155_pilon__uns (4791 bp)
chr contig_1560_pilon__uns (333098 bp)
chr contig_1566_pilon__uns (84111 bp)
chr contig_1571_pilon__uns (14979 bp)
chr contig_157_pilon__uns (49266 bp)
chr contig_1599_pilon__uns (36273 bp)
chr contig_1600_pilon__uns (89161 bp)
chr contig_1609_pilon__uns (5790 bp)
chr contig_1611_pilon__uns (3832 bp)
chr contig_1616_pilon__uns (11738 bp)
chr contig_1620_pilon__uns (7185 bp)
chr contig_1622_pilon__uns (135668 bp)
chr contig_1628_pilon__uns (13962 bp)
chr contig_1631_pilon__uns (41184 bp)
chr contig_1638_pilon__uns (19446 bp)
chr contig_1643_pilon__uns (7932 bp)
chr contig_1645_pilon__uns (5513 bp)
chr contig_1646_pilon__uns (70602 bp)
chr contig_1650_pilon__uns (3556 bp)
chr contig_1652_pilon__uns (3485 bp)
chr contig_1655_pilon__uns (164032 bp)
chr contig_1663_pilon__uns (75097 bp)
chr contig_1664_pilon__uns (5725 bp)
chr contig_1668_pilon__uns (28516 bp)
chr contig_166_pilon___frag_2___debris__uns (5001 bp)
chr contig_1670_pilon__uns (42678 bp)
chr contig_1671_pilon__uns (114058 bp)
chr contig_1672_pilon__uns (66804 bp)
chr contig_1676_pilon__uns (47916 bp)
chr contig_1678_pilon__uns (5925 bp)
chr contig_1680_pilon__uns (11792 bp)
chr contig_1681_pilon__uns (10846 bp)
chr contig_1685_pilon__uns (5172 bp)
chr contig_1689_pilon__uns (2288 bp)
chr contig_1691_pilon__uns (2249 bp)
chr contig_1697_pilon__uns (17619 bp)
chr contig_1706_pilon__uns (82540 bp)
chr contig_1710_pilon__uns (4131 bp)
chr contig_1714_pilon__uns (24313 bp)
chr contig_1716_pilon__uns (54164 bp)
chr contig_1720_pilon__uns (695 bp)
chr contig_1729_pilon__uns (52598 bp)
chr contig_172_pilon__uns (91557 bp)
chr contig_1730_pilon__uns (32295 bp)
chr contig_1733_pilon__uns (5020 bp)
chr contig_1734_pilon__uns (1363 bp)
chr contig_1737_pilon__uns (47521 bp)
chr contig_1739_pilon__uns (5871 bp)
chr contig_1740_pilon__uns (5852 bp)
chr contig_1742_pilon__uns (4028 bp)
chr contig_1743_pilon__uns (8595 bp)
chr contig_1744_pilon__uns (604 bp)
chr contig_1745_pilon__uns (1561 bp)
chr contig_174_pilon__uns (54007 bp)
chr contig_1752_pilon__uns (10260 bp)
chr contig_1753_pilon__uns (1883 bp)
chr contig_1755_pilon__uns (2286 bp)
chr contig_1760_pilon__uns (5666 bp)
chr contig_1761_pilon__uns (7943 bp)
chr contig_1768_pilon__uns (9947 bp)
chr contig_176_pilon__uns (111249 bp)
chr contig_1770_pilon__uns (2417 bp)
chr contig_1771_pilon__uns (102605 bp)
chr contig_1772_pilon__uns (2922 bp)
chr contig_1773_pilon__uns (6935 bp)
chr contig_177_pilon__uns (55932 bp)
chr contig_1780_pilon___frag_1__uns (45140 bp)
chr contig_1780_pilon___frag_2___debris__uns (5001 bp)
chr contig_1780_pilon___frag_3__uns (50729 bp)
chr contig_1781_pilon__uns (61091 bp)
chr contig_1787_pilon__uns (1062 bp)
chr contig_1789_pilon___frag_2___debris__uns (5001 bp)
chr contig_1795_pilon___frag_1__uns (33876 bp)
chr contig_1795_pilon___frag_2___debris__uns (1001 bp)
chr contig_1797_pilon__uns (175015 bp)
chr contig_1801_pilon___frag_2___debris__uns (3001 bp)
chr contig_180_pilon__uns (33499 bp)
chr contig_1810_pilon__uns (153616 bp)
chr contig_1811_pilon__uns (7605 bp)
chr contig_1815_pilon__uns (35821 bp)
chr contig_1816_pilon__uns (971 bp)
chr contig_1819_pilon__uns (167132 bp)
chr contig_1829_pilon__uns (5598 bp)
chr contig_1830_pilon__uns (69382 bp)
chr contig_1834_pilon__uns (55318 bp)
chr contig_1835_pilon__uns (34243 bp)
chr contig_1839_pilon__uns (125770 bp)
chr contig_1840_pilon__uns (1100 bp)
chr contig_1846_pilon__uns (76239 bp)
chr contig_1858_pilon__uns (7093 bp)
chr contig_185_pilon__uns (275460 bp)
chr contig_1864_pilon__uns (14997 bp)
chr contig_1868_pilon__uns (52567 bp)
chr contig_1869_pilon__uns (5859 bp)
chr contig_1870_pilon__uns (7657 bp)
chr contig_1875_pilon__uns (659 bp)
chr contig_1877_pilon__uns (22793 bp)
chr contig_1878_pilon__uns (1286 bp)
chr contig_1881_pilon__uns (121974 bp)
chr contig_1883_pilon__uns (42930 bp)
chr contig_1888_pilon__uns (10580 bp)
chr contig_1892_pilon__uns (196776 bp)
chr contig_1896_pilon__uns (48012 bp)
chr contig_189_pilon__uns (97499 bp)
chr contig_1902_pilon__uns (58128 bp)
chr contig_1904_pilon__uns (48727 bp)
chr contig_1907_pilon__uns (89777 bp)
chr contig_1908_pilon__uns (73277 bp)
chr contig_190_pilon___frag_1__uns (111977 bp)
chr contig_190_pilon___frag_2___debris__uns (5001 bp)
chr contig_1916_pilon__uns (6751 bp)
chr contig_1921_pilon__uns (53726 bp)
chr contig_1923_pilon___frag_1__uns (77806 bp)
chr contig_1923_pilon___frag_2___debris__uns (2001 bp)
chr contig_1923_pilon___frag_3__uns (66044 bp)
chr contig_1924_pilon__uns (78227 bp)
chr contig_1925_pilon__uns (6811 bp)
chr contig_1926_pilon__uns (2660 bp)
chr contig_1929_pilon___frag_2___debris__uns (5001 bp)
chr contig_1931_pilon___frag_1__uns (43524 bp)
chr contig_1931_pilon___frag_2___debris__uns (3001 bp)
chr contig_1931_pilon___frag_3__uns (27001 bp)
chr contig_1931_pilon___frag_4___debris__uns (3001 bp)
chr contig_1931_pilon___frag_5__uns (83967 bp)
chr contig_1939_pilon__uns (14772 bp)
chr contig_1940_pilon__uns (24723 bp)
chr contig_1943_pilon__uns (9260 bp)
chr contig_1945_pilon__uns (7142 bp)
chr contig_1962_pilon__uns (3945 bp)
chr contig_1963_pilon__uns (99819 bp)
chr contig_1965_pilon__uns (7850 bp)
chr contig_1969_pilon__uns (115934 bp)
chr contig_1974_pilon__uns (17359 bp)
chr contig_1989_pilon__uns (31765 bp)
chr contig_1991_pilon__uns (3288 bp)
chr contig_1993_pilon___frag_1__uns (145360 bp)
chr contig_1993_pilon___frag_2___debris__uns (5001 bp)
chr contig_1993_pilon___frag_3__uns (64133 bp)
chr contig_1998_pilon__uns (826 bp)
chr contig_199_pilon__uns (151342 bp)
chr contig_1_pilon__uns (81548 bp)
chr contig_2001_pilon__uns (10224 bp)
chr contig_2002_pilon__uns (30357 bp)
chr contig_2010_pilon__uns (4207 bp)
chr contig_2014_pilon__uns (596 bp)
chr contig_203_pilon__uns (74569 bp)
chr contig_2042_pilon__uns (65692 bp)
chr contig_2049_pilon__uns (1954 bp)
chr contig_204_pilon__uns (196437 bp)
chr contig_2057_pilon__uns (331809 bp)
chr contig_2060_pilon__uns (38054 bp)
chr contig_2068_pilon__uns (933 bp)
chr contig_2069_pilon__uns (1150 bp)
chr contig_206_pilon__uns (12803 bp)
chr contig_2078_pilon__uns (309 bp)
chr contig_2087_pilon__uns (14648 bp)
chr contig_2093_pilon__uns (555 bp)
chr contig_2098_pilon__uns (4281 bp)
chr contig_2100_pilon__uns (12962 bp)
chr contig_210_pilon__uns (104705 bp)
chr contig_2111_pilon__uns (579 bp)
chr contig_2112_pilon__uns (19422 bp)
chr contig_211_pilon___frag_1__uns (63350 bp)
chr contig_211_pilon___frag_2___debris__uns (2001 bp)
chr contig_211_pilon___frag_3__uns (14643 bp)
chr contig_2122_pilon__uns (4263 bp)
chr contig_2126_pilon__uns (905 bp)
chr contig_2131_pilon__uns (680 bp)
chr contig_2139_pilon__uns (562 bp)
chr contig_2140_pilon__uns (31337 bp)
chr contig_2141_pilon__uns (607 bp)
chr contig_2143_pilon__uns (33651 bp)
chr contig_2149_pilon__uns (238 bp)
chr contig_2153_pilon__uns (14315 bp)
chr contig_2164_pilon__uns (5315 bp)
chr contig_2165_pilon__uns (1319 bp)
chr contig_2167_pilon__uns (947 bp)
chr contig_2168_pilon__uns (574 bp)
chr contig_2176_pilon___frag_2___debris__uns (3001 bp)
chr contig_217_pilon__uns (59632 bp)
chr contig_2180_pilon__uns (53284 bp)
chr contig_2182_pilon__uns (12085 bp)
chr contig_2183_pilon__uns (111072 bp)
chr contig_218_pilon__uns (51761 bp)
chr contig_2192_pilon__uns (14220 bp)
chr contig_2194_pilon__uns (15147 bp)
chr contig_2198_pilon__uns (526 bp)
chr contig_219_pilon__uns (100718 bp)
chr contig_2200_pilon__uns (620 bp)
chr contig_2201_pilon__uns (614 bp)
chr contig_2207_pilon__uns (612 bp)
chr contig_2209_pilon__uns (601 bp)
chr contig_220_pilon___frag_1__uns (105323 bp)
chr contig_220_pilon___frag_2___debris__uns (5001 bp)
chr contig_220_pilon___frag_3__uns (57273 bp)
chr contig_2213_pilon__uns (3192 bp)
chr contig_2215_pilon__uns (645 bp)
chr contig_2216_pilon__uns (971 bp)
chr contig_2236_pilon__uns (641 bp)
chr contig_2238_pilon__uns (621 bp)
chr contig_223_pilon__uns (18750 bp)
chr contig_2240_pilon__uns (517 bp)
chr contig_2242_pilon__uns (822 bp)
chr contig_2245_pilon__uns (518 bp)
chr contig_2247_pilon__uns (3006 bp)
chr contig_2248_pilon__uns (10338 bp)
chr contig_2249_pilon__uns (19158 bp)
chr contig_2250_pilon__uns (1328 bp)
chr contig_2251_pilon__uns (835 bp)
chr contig_2253_pilon__uns (2210 bp)
chr contig_2254_pilon__uns (83743 bp)
chr contig_2255_pilon__uns (96187 bp)
chr contig_2259_pilon__uns (4316 bp)
chr contig_225_pilon__uns (2653 bp)
chr contig_2260_pilon__uns (2598 bp)
chr contig_2262_pilon__uns (535 bp)
chr contig_2265_pilon__uns (1986 bp)
chr contig_2271_pilon__uns (1359 bp)
chr contig_2274_pilon__uns (94906 bp)
chr contig_2278_pilon__uns (659 bp)
chr contig_2280_pilon__uns (36570 bp)
chr contig_2281_pilon__uns (1492 bp)
chr contig_2284_pilon__uns (1520 bp)
chr contig_2286_pilon__uns (236878 bp)
chr contig_2288_pilon__uns (1805 bp)
chr contig_2289_pilon__uns (3280 bp)
chr contig_2290_pilon__uns (2724 bp)
chr contig_2291_pilon__uns (1746 bp)
chr contig_2292_pilon__uns (2233 bp)
chr contig_2294_pilon__uns (1453 bp)
chr contig_2295_pilon__uns (73788 bp)
chr contig_2296_pilon__uns (1506 bp)
chr contig_2297_pilon__uns (836 bp)
chr contig_2299_pilon__uns (36259 bp)
chr contig_2302_pilon__uns (1130 bp)
chr contig_2304_pilon__uns (501 bp)
chr contig_2306_pilon__uns (2728 bp)
chr contig_2309_pilon__uns (219 bp)
chr contig_2311_pilon__uns (2500 bp)
chr contig_2312_pilon__uns (1505 bp)
chr contig_2313_pilon__uns (12568 bp)
chr contig_2316_pilon__uns (3744 bp)
chr contig_2317_pilon__uns (1549 bp)
chr contig_2318_pilon__uns (521 bp)
chr contig_2320_pilon__uns (840 bp)
chr contig_2321_pilon__uns (2166 bp)
chr contig_2322_pilon__uns (145225 bp)
chr contig_2325_pilon__uns (703 bp)
chr contig_2326_pilon__uns (7523 bp)
chr contig_2333_pilon__uns (2068 bp)
chr contig_2334_pilon__uns (1491 bp)
chr contig_2336_pilon__uns (1687 bp)
chr contig_2337_pilon__uns (2645 bp)
chr contig_2339_pilon__uns (2130 bp)
chr contig_233_pilon__uns (80815 bp)
chr contig_2341_pilon__uns (1483 bp)
chr contig_2344_pilon__uns (2017 bp)
chr contig_2345_pilon___frag_1__uns (373001 bp)
chr contig_2345_pilon___frag_2___debris__uns (25001 bp)
chr contig_2345_pilon___frag_3__uns (285820 bp)
chr contig_2347_pilon__uns (125671 bp)
chr contig_234_pilon__uns (4757 bp)
chr contig_2354_pilon__uns (573 bp)
chr contig_2355_pilon__uns (3973 bp)
chr contig_2357_pilon__uns (4960 bp)
chr contig_2358_pilon__uns (975 bp)
chr contig_235_pilon__uns (7871 bp)
chr contig_2360_pilon__uns (811 bp)
chr contig_2362_pilon__uns (724 bp)
chr contig_2363_pilon__uns (1746 bp)
chr contig_2364_pilon__uns (3331 bp)
chr contig_2365_pilon__uns (2077 bp)
chr contig_2367_pilon__uns (547 bp)
chr contig_2368_pilon__uns (395 bp)
chr contig_2369_pilon__uns (3792 bp)
chr contig_236_pilon__uns (36222 bp)
chr contig_2370_pilon__uns (1473 bp)
chr contig_2376_pilon__uns (28699 bp)
chr contig_2377_pilon__uns (1055 bp)
chr contig_2378_pilon__uns (14061 bp)
chr contig_2388_pilon__uns (1152 bp)
chr contig_238_pilon__uns (83364 bp)
chr contig_2390_pilon__uns (738 bp)
chr contig_2391_pilon__uns (811 bp)
chr contig_2392_pilon__uns (26634 bp)
chr contig_2399_pilon__uns (2663 bp)
chr contig_239_pilon__uns (16492 bp)
chr contig_23_pilon___frag_2___debris__uns (5001 bp)
chr contig_2401_pilon__uns (653 bp)
chr contig_2402_pilon__uns (322 bp)
chr contig_2405_pilon__uns (712 bp)
chr contig_2409_pilon__uns (1319 bp)
chr contig_2411_pilon__uns (1073 bp)
chr contig_2416_pilon__uns (1050 bp)
chr contig_2417_pilon__uns (826 bp)
chr contig_2418_pilon__uns (558 bp)
chr contig_2421_pilon__uns (763 bp)
chr contig_2423_pilon__uns (415 bp)
chr contig_2427_pilon__uns (1624 bp)
chr contig_2430_pilon__uns (60849 bp)
chr contig_2433_pilon__uns (1823 bp)
chr contig_2434_pilon__uns (7012 bp)
chr contig_2435_pilon__uns (9205 bp)
chr contig_2439_pilon__uns (12539 bp)
chr contig_2440_pilon__uns (7010 bp)
chr contig_2443_pilon__uns (81609 bp)
chr contig_2444_pilon__uns (1088 bp)
chr contig_2446_pilon__uns (1145 bp)
chr contig_2449_pilon__uns (1704 bp)
chr contig_244_pilon__uns (57586 bp)
chr contig_2455_pilon__uns (1253 bp)
chr contig_2456_pilon__uns (31799 bp)
chr contig_2457_pilon__uns (1260 bp)
chr contig_2459_pilon__uns (531 bp)
chr contig_2462_pilon__uns (2784 bp)
chr contig_2463_pilon__uns (685 bp)
chr contig_2466_pilon__uns (2353 bp)
chr contig_2469_pilon__uns (2167 bp)
chr contig_2471_pilon__uns (3449 bp)
chr contig_2473_pilon__uns (6369 bp)
chr contig_2475_pilon__uns (30412 bp)
chr contig_2476_pilon__uns (540 bp)
chr contig_2477_pilon__uns (1465 bp)
chr contig_247_pilon___frag_2___debris__uns (5001 bp)
chr contig_2480_pilon__uns (551 bp)
chr contig_2484_pilon__uns (1677 bp)
chr contig_2486_pilon__uns (509 bp)
chr contig_2487_pilon__uns (5754 bp)
chr contig_248_pilon__uns (159208 bp)
chr contig_2490_pilon__uns (438 bp)
chr contig_2491_pilon__uns (911 bp)
chr contig_2492_pilon___frag_1__uns (10126 bp)
chr contig_2492_pilon___frag_2___debris__uns (5001 bp)
chr contig_2492_pilon___frag_3__uns (154682 bp)
chr contig_2494_pilon__uns (637 bp)
chr contig_2497_pilon__uns (704 bp)
chr contig_2499_pilon__uns (1368 bp)
chr contig_2500_pilon__uns (727 bp)
chr contig_2503_pilon__uns (177249 bp)
chr contig_2507_pilon__uns (19350 bp)
chr contig_2509_pilon__uns (43484 bp)
chr contig_2510_pilon__uns (22480 bp)
chr contig_2512_pilon__uns (79056 bp)
chr contig_2513_pilon__uns (763 bp)
chr contig_2515_pilon__uns (38993 bp)
chr contig_2517_pilon__uns (1251 bp)
chr contig_2518_pilon__uns (973 bp)
chr contig_2519_pilon__uns (110862 bp)
chr contig_251_pilon__uns (15036 bp)
chr contig_2520_pilon__uns (741 bp)
chr contig_2525_pilon__uns (4277 bp)
chr contig_2527_pilon__uns (62155 bp)
chr contig_252_pilon__uns (74166 bp)
chr contig_2533_pilon__uns (36092 bp)
chr contig_2535_pilon__uns (2095 bp)
chr contig_2536_pilon__uns (983 bp)
chr contig_2539_pilon__uns (261 bp)
chr contig_2540_pilon__uns (770 bp)
chr contig_2544_pilon__uns (14201 bp)
chr contig_2549_pilon__uns (1666 bp)
chr contig_2550_pilon__uns (2710 bp)
chr contig_2551_pilon__uns (1009 bp)
chr contig_2552_pilon__uns (52219 bp)
chr contig_2555_pilon__uns (665 bp)
chr contig_2560_pilon__uns (18273 bp)
chr contig_2563_pilon__uns (9393 bp)
chr contig_2564_pilon__uns (2005 bp)
chr contig_2565_pilon__uns (632 bp)
chr contig_2566_pilon__uns (225 bp)
chr contig_2569_pilon__uns (1094 bp)
chr contig_256_pilon__uns (38364 bp)
chr contig_2570_pilon__uns (8061 bp)
chr contig_2572_pilon__uns (3376 bp)
chr contig_2574_pilon__uns (554 bp)
chr contig_2587_pilon__uns (7725 bp)
chr contig_2588_pilon__uns (652 bp)
chr contig_2594_pilon__uns (9117 bp)
chr contig_2595_pilon__uns (601 bp)
chr contig_2596_pilon__uns (819 bp)
chr contig_2598_pilon__uns (1919 bp)
chr contig_2600_pilon__uns (25232 bp)
chr contig_2607_pilon__uns (51272 bp)
chr contig_2608_pilon__uns (2986 bp)
chr contig_2609_pilon__uns (25503 bp)
chr contig_260_pilon__uns (2161 bp)
chr contig_2610_pilon__uns (18784 bp)
chr contig_2612_pilon__uns (63149 bp)
chr contig_2613_pilon__uns (4485 bp)
chr contig_2614_pilon__uns (537 bp)
chr contig_2617_pilon__uns (848 bp)
chr contig_2618_pilon__uns (855 bp)
chr contig_2619_pilon__uns (4174 bp)
chr contig_2620_pilon__uns (1052 bp)
chr contig_2627_pilon__uns (82536 bp)
chr contig_2628_pilon__uns (530 bp)
chr contig_2629_pilon___frag_1__uns (65338 bp)
chr contig_2629_pilon___frag_2___debris__uns (3001 bp)
chr contig_2629_pilon___frag_3__uns (50921 bp)
chr contig_262_pilon__uns (1589 bp)
chr contig_2630_pilon__uns (205 bp)
chr contig_2637_pilon__uns (1206 bp)
chr contig_2639_pilon__uns (17570 bp)
chr contig_2641_pilon__uns (505 bp)
chr contig_2642_pilon__uns (265261 bp)
chr contig_2643_pilon__uns (70227 bp)
chr contig_2646_pilon__uns (669 bp)
chr contig_2650_pilon__uns (809 bp)
chr contig_2651_pilon__uns (1228 bp)
chr contig_2653_pilon__uns (728 bp)
chr contig_2654_pilon__uns (3416 bp)
chr contig_2656_pilon__uns (1327 bp)
chr contig_2657_pilon__uns (205 bp)
chr contig_2663_pilon__uns (1130 bp)
chr contig_2664_pilon__uns (4709 bp)
chr contig_2666_pilon__uns (2068 bp)
chr contig_2667_pilon__uns (509 bp)
chr contig_2669_pilon__uns (103544 bp)
chr contig_266_pilon__uns (26708 bp)
chr contig_2670_pilon__uns (39150 bp)
chr contig_2671_pilon__uns (692 bp)
chr contig_2672_pilon__uns (1704 bp)
chr contig_2676_pilon__uns (1309 bp)
chr contig_2677_pilon__uns (2526 bp)
chr contig_2678_pilon__uns (459 bp)
chr contig_2679_pilon__uns (1950 bp)
chr contig_2683_pilon__uns (487 bp)
chr contig_2687_pilon__uns (3343 bp)
chr contig_268_pilon__uns (147305 bp)
chr contig_2694_pilon__uns (2395 bp)
chr contig_2695_pilon__uns (1546 bp)
chr contig_2699_pilon__uns (226254 bp)
chr contig_269_pilon__uns (60078 bp)
chr contig_2702_pilon__uns (1751 bp)
chr contig_2706_pilon__uns (1234 bp)
chr contig_2708_pilon__uns (524 bp)
chr contig_2710_pilon__uns (23943 bp)
chr contig_2714_pilon__uns (574 bp)
chr contig_2717_pilon__uns (2540 bp)
chr contig_2718_pilon__uns (48717 bp)
chr contig_2719_pilon__uns (420 bp)
chr contig_2722_pilon__uns (4397 bp)
chr contig_2724_pilon__uns (1666 bp)
chr contig_2725_pilon__uns (24535 bp)
chr contig_2727_pilon__uns (2113 bp)
chr contig_2730_pilon__uns (62651 bp)
chr contig_2732_pilon__uns (506 bp)
chr contig_2735_pilon__uns (17374 bp)
chr contig_2736_pilon__uns (704 bp)
chr contig_2738_pilon__uns (1318 bp)
chr contig_2740_pilon__uns (539 bp)
chr contig_2745_pilon__uns (1908 bp)
chr contig_2747_pilon__uns (1184 bp)
chr contig_2750_pilon__uns (474 bp)
chr contig_2751_pilon__uns (550 bp)
chr contig_2753_pilon__uns (2549 bp)
chr contig_2758_pilon__uns (977 bp)
chr contig_2760_pilon__uns (1093 bp)
chr contig_2763_pilon__uns (111733 bp)
chr contig_2765_pilon__uns (1704 bp)
chr contig_2766_pilon__uns (785 bp)
chr contig_2767_pilon__uns (9244 bp)
chr contig_2771_pilon__uns (960 bp)
chr contig_2773_pilon__uns (1128 bp)
chr contig_2775_pilon__uns (2933 bp)
chr contig_2777_pilon__uns (1493 bp)
chr contig_2778_pilon__uns (1109 bp)
chr contig_2779_pilon__uns (924 bp)
chr contig_2782_pilon__uns (2365 bp)
chr contig_2787_pilon__uns (61885 bp)
chr contig_2788_pilon__uns (466 bp)
chr contig_2791_pilon__uns (12555 bp)
chr contig_2792_pilon__uns (1099 bp)
chr contig_2811_pilon__uns (1204 bp)
chr contig_2815_pilon__uns (1441 bp)
chr contig_2816_pilon__uns (23180 bp)
chr contig_2817_pilon__uns (517 bp)
chr contig_2819_pilon__uns (2116 bp)
chr contig_2820_pilon__uns (773 bp)
chr contig_2822_pilon__uns (1551 bp)
chr contig_2823_pilon__uns (1551 bp)
chr contig_2824_pilon__uns (503 bp)
chr contig_2828_pilon__uns (1987 bp)
chr contig_2829_pilon__uns (3830 bp)
chr contig_282_pilon__uns (114431 bp)
chr contig_2830_pilon__uns (4737 bp)
chr contig_2832_pilon__uns (1513 bp)
chr contig_2834_pilon__uns (1295 bp)
chr contig_2835_pilon__uns (2015 bp)
chr contig_2836_pilon__uns (1051 bp)
chr contig_2838_pilon__uns (3820 bp)
chr contig_2840_pilon__uns (1042 bp)
chr contig_2841_pilon__uns (958 bp)
chr contig_2846_pilon__uns (12621 bp)
chr contig_2851_pilon__uns (478 bp)
chr contig_2856_pilon__uns (982 bp)
chr contig_2857_pilon__uns (874 bp)
chr contig_2858_pilon__uns (507 bp)
chr contig_2859_pilon__uns (548 bp)
chr contig_2861_pilon__uns (1349 bp)
chr contig_2865_pilon__uns (2328 bp)
chr contig_2867_pilon__uns (3865 bp)
chr contig_2872_pilon__uns (3672 bp)
chr contig_2874_pilon___frag_1__uns (101668 bp)
chr contig_2874_pilon___frag_2___debris__uns (3001 bp)
chr contig_2874_pilon___frag_3__uns (33619 bp)
chr contig_2875_pilon__uns (10005 bp)
chr contig_2878_pilon__uns (586 bp)
chr contig_2879_pilon__uns (2631 bp)
chr contig_2881_pilon__uns (29620 bp)
chr contig_2882_pilon__uns (9022 bp)
chr contig_2883_pilon__uns (632 bp)
chr contig_2884_pilon__uns (583 bp)
chr contig_2885_pilon__uns (1069 bp)
chr contig_2886_pilon__uns (585 bp)
chr contig_2889_pilon__uns (5611 bp)
chr contig_288_pilon__uns (31635 bp)
chr contig_2894_pilon__uns (5284 bp)
chr contig_2895_pilon__uns (522 bp)
chr contig_2896_pilon__uns (801 bp)
chr contig_289_pilon___frag_2___debris__uns (2001 bp)
chr contig_289_pilon___frag_3__uns (43001 bp)
chr contig_289_pilon___frag_4___debris__uns (2001 bp)
chr contig_289_pilon___frag_5__uns (28001 bp)
chr contig_289_pilon___frag_6___debris__uns (2001 bp)
chr contig_289_pilon___frag_7__uns (115135 bp)
chr contig_2900_pilon__uns (611 bp)
chr contig_2901_pilon__uns (427 bp)
chr contig_2905_pilon__uns (1723 bp)
chr contig_2906_pilon__uns (557 bp)
chr contig_2909_pilon__uns (1695 bp)
chr contig_2911_pilon__uns (1067 bp)
chr contig_2920_pilon__uns (2449 bp)
chr contig_2921_pilon__uns (511 bp)
chr contig_2922_pilon__uns (1042 bp)
chr contig_2923_pilon__uns (724 bp)
chr contig_2924_pilon__uns (1221 bp)
chr contig_2926_pilon__uns (687 bp)
chr contig_2927_pilon__uns (12971 bp)
chr contig_2928_pilon__uns (521 bp)
chr contig_2929_pilon__uns (62462 bp)
chr contig_2932_pilon__uns (7023 bp)
chr contig_2934_pilon__uns (539 bp)
chr contig_2935_pilon__uns (537 bp)
chr contig_2936_pilon__uns (657 bp)
chr contig_2940_pilon__uns (3555 bp)
chr contig_2941_pilon__uns (526 bp)
chr contig_2942_pilon__uns (5609 bp)
chr contig_2943_pilon__uns (554 bp)
chr contig_2946_pilon__uns (1412 bp)
chr contig_2948_pilon__uns (2064 bp)
chr contig_2949_pilon__uns (45798 bp)
chr contig_294_pilon__uns (4853 bp)
chr contig_2950_pilon__uns (202324 bp)
chr contig_2951_pilon__uns (566 bp)
chr contig_2952_pilon__uns (75605 bp)
chr contig_2953_pilon__uns (1075 bp)
chr contig_2954_pilon__uns (894 bp)
chr contig_2955_pilon__uns (816 bp)
chr contig_2960_pilon__uns (1118 bp)
chr contig_2962_pilon__uns (4637 bp)
chr contig_2965_pilon__uns (148305 bp)
chr contig_2966_pilon__uns (543 bp)
chr contig_2967_pilon__uns (5959 bp)
chr contig_2968_pilon__uns (3698 bp)
chr contig_2969_pilon__uns (920 bp)
chr contig_2970_pilon__uns (358 bp)
chr contig_2973_pilon__uns (258 bp)
chr contig_2976_pilon__uns (3245 bp)
chr contig_2978_pilon__uns (644 bp)
chr contig_2980_pilon__uns (601 bp)
chr contig_2981_pilon__uns (213477 bp)
chr contig_2983_pilon__uns (454 bp)
chr contig_2984_pilon__uns (766 bp)
chr contig_2987_pilon__uns (2463 bp)
chr contig_2994_pilon__uns (44412 bp)
chr contig_2997_pilon__uns (787 bp)
chr contig_2999_pilon__uns (2316 bp)
chr contig_3000_pilon__uns (586 bp)
chr contig_3001_pilon__uns (100813 bp)
chr contig_3002_pilon__uns (749 bp)
chr contig_3003_pilon__uns (553 bp)
chr contig_3004_pilon__uns (738 bp)
chr contig_3009_pilon__uns (29579 bp)
chr contig_3010_pilon__uns (521 bp)
chr contig_3013_pilon__uns (283 bp)
chr contig_3015_pilon__uns (919 bp)
chr contig_3017_pilon__uns (4628 bp)
chr contig_3019_pilon__uns (23441 bp)
chr contig_3020_pilon__uns (1701 bp)
chr contig_3022_pilon__uns (924 bp)
chr contig_3024_pilon__uns (414 bp)
chr contig_3025_pilon__uns (1923 bp)
chr contig_3026_pilon__uns (544 bp)
chr contig_3027_pilon__uns (1140 bp)
chr contig_3028_pilon__uns (570 bp)
chr contig_3032_pilon___frag_1__uns (69854 bp)
chr contig_3032_pilon___frag_2___debris__uns (5001 bp)
chr contig_3036_pilon__uns (1233 bp)
chr contig_303_pilon__uns (95309 bp)
chr contig_3040_pilon__uns (12459 bp)
chr contig_3041_pilon__uns (634 bp)
chr contig_3043_pilon__uns (1171 bp)
chr contig_3044_pilon__uns (9894 bp)
chr contig_3047_pilon__uns (699 bp)
chr contig_3055_pilon__uns (885 bp)
chr contig_3058_pilon__uns (528 bp)
chr contig_3061_pilon__uns (825 bp)
chr contig_3064_pilon__uns (3245 bp)
chr contig_3068_pilon__uns (1290 bp)
chr contig_3070_pilon__uns (4062 bp)
chr contig_3072_pilon__uns (1632 bp)
chr contig_3073_pilon__uns (789 bp)
chr contig_3074_pilon__uns (646 bp)
chr contig_3079_pilon__uns (680 bp)
chr contig_3086_pilon__uns (9591 bp)
chr contig_3087_pilon__uns (856 bp)
chr contig_3088_pilon__uns (95412 bp)
chr contig_3090_pilon__uns (29503 bp)
chr contig_3093_pilon__uns (2620 bp)
chr contig_3102_pilon__uns (2517 bp)
chr contig_3103_pilon__uns (550 bp)
chr contig_3104_pilon__uns (558 bp)
chr contig_3106_pilon__uns (549 bp)
chr contig_310_pilon__uns (3958 bp)
chr contig_3112_pilon__uns (1008 bp)
chr contig_3113_pilon__uns (802 bp)
chr contig_3120_pilon__uns (234133 bp)
chr contig_3126_pilon__uns (3712 bp)
chr contig_3127_pilon__uns (11783 bp)
chr contig_312_pilon__uns (11570 bp)
chr contig_3130_pilon__uns (627 bp)
chr contig_3132_pilon__uns (12853 bp)
chr contig_3133_pilon__uns (2642 bp)
chr contig_3138_pilon__uns (3637 bp)
chr contig_3141_pilon__uns (700 bp)
chr contig_3142_pilon__uns (1053 bp)
chr contig_3144_pilon__uns (1077 bp)
chr contig_3146_pilon__uns (514 bp)
chr contig_3147_pilon__uns (3536 bp)
chr contig_3150_pilon__uns (22745 bp)
chr contig_3151_pilon__uns (753 bp)
chr contig_3153_pilon__uns (561 bp)
chr contig_3155_pilon__uns (565 bp)
chr contig_3156_pilon__uns (23398 bp)
chr contig_315_pilon__uns (131916 bp)
chr contig_3160_pilon__uns (5210 bp)
chr contig_3161_pilon__uns (605 bp)
chr contig_3163_pilon__uns (544 bp)
chr contig_3166_pilon__uns (1335 bp)
chr contig_3169_pilon__uns (5058 bp)
chr contig_3172_pilon__uns (637 bp)
chr contig_3173_pilon__uns (892 bp)
chr contig_3177_pilon__uns (589 bp)
chr contig_3180_pilon__uns (659 bp)
chr contig_3181_pilon__uns (3343 bp)
chr contig_3185_pilon__uns (2627 bp)
chr contig_3186_pilon__uns (25243 bp)
chr contig_3190_pilon__uns (890 bp)
chr contig_3192_pilon__uns (1147 bp)
chr contig_3194_pilon__uns (2402 bp)
chr contig_3197_pilon__uns (18566 bp)
chr contig_3199_pilon__uns (4327 bp)
chr contig_31_pilon__uns (54961 bp)
chr contig_3200_pilon__uns (2159 bp)
chr contig_3201_pilon__uns (565 bp)
chr contig_3203_pilon__uns (27609 bp)
chr contig_3204_pilon__uns (1288 bp)
chr contig_3209_pilon__uns (1162 bp)
chr contig_320_pilon__uns (3760 bp)
chr contig_3211_pilon__uns (12527 bp)
chr contig_3212_pilon__uns (4732 bp)
chr contig_3213_pilon__uns (632 bp)
chr contig_3220_pilon__uns (2847 bp)
chr contig_3223_pilon__uns (776 bp)
chr contig_3224_pilon__uns (161790 bp)
chr contig_3225_pilon__uns (3471 bp)
chr contig_3228_pilon__uns (11303 bp)
chr contig_3230_pilon__uns (1674 bp)
chr contig_3231_pilon__uns (1302 bp)
chr contig_3232_pilon__uns (839 bp)
chr contig_3233_pilon__uns (1093 bp)
chr contig_3235_pilon__uns (1379 bp)
chr contig_3236_pilon__uns (623 bp)
chr contig_3237_pilon__uns (102454 bp)
chr contig_3243_pilon__uns (3470 bp)
chr contig_3244_pilon__uns (810 bp)
chr contig_3249_pilon__uns (594 bp)
chr contig_3251_pilon__uns (974 bp)
chr contig_3252_pilon__uns (22315 bp)
chr contig_3254_pilon__uns (673 bp)
chr contig_3257_pilon__uns (6843 bp)
chr contig_3258_pilon__uns (1658 bp)
chr contig_3259_pilon__uns (1270 bp)
chr contig_3260_pilon__uns (740 bp)
chr contig_3261_pilon__uns (577 bp)
chr contig_3262_pilon__uns (627 bp)
chr contig_3266_pilon__uns (4150 bp)
chr contig_3269_pilon__uns (1844 bp)
chr contig_327_pilon__uns (298262 bp)
chr contig_3284_pilon__uns (1000 bp)
chr contig_3285_pilon__uns (547 bp)
chr contig_3295_pilon__uns (554 bp)
chr contig_3298_pilon__uns (1724 bp)
chr contig_32_pilon___frag_1__uns (22116 bp)
chr contig_32_pilon___frag_2___debris__uns (3001 bp)
chr contig_3301_pilon__uns (31796 bp)
chr contig_3302_pilon__uns (1657 bp)
chr contig_3305_pilon__uns (772 bp)
chr contig_3306_pilon__uns (1805 bp)
chr contig_3307_pilon__uns (668 bp)
chr contig_3311_pilon__uns (1660 bp)
chr contig_3317_pilon__uns (729 bp)
chr contig_3318_pilon__uns (2955 bp)
chr contig_3319_pilon__uns (646 bp)
chr contig_331_pilon__uns (2604 bp)
chr contig_3320_pilon__uns (111711 bp)
chr contig_3321_pilon__uns (251448 bp)
chr contig_3323_pilon__uns (912 bp)
chr contig_3326_pilon__uns (1756 bp)
chr contig_3327_pilon__uns (1658 bp)
chr contig_3331_pilon__uns (3077 bp)
chr contig_3339_pilon__uns (2823 bp)
chr contig_3342_pilon__uns (2090 bp)
chr contig_3343_pilon__uns (18928 bp)
chr contig_3344_pilon__uns (902 bp)
chr contig_3346_pilon__uns (1421 bp)
chr contig_3347_pilon__uns (2314 bp)
chr contig_3348_pilon__uns (1352 bp)
chr contig_334_pilon__uns (15492 bp)
chr contig_3351_pilon__uns (16074 bp)
chr contig_3352_pilon__uns (634 bp)
chr contig_3353_pilon__uns (1112 bp)
chr contig_3354_pilon__uns (3305 bp)
chr contig_3355_pilon__uns (4077 bp)
chr contig_3358_pilon__uns (876 bp)
chr contig_3360_pilon__uns (590 bp)
chr contig_3361_pilon__uns (5598 bp)
chr contig_3363_pilon__uns (469 bp)
chr contig_3367_pilon__uns (1065 bp)
chr contig_3368_pilon__uns (62060 bp)
chr contig_3369_pilon__uns (1041 bp)
chr contig_336_pilon__uns (24230 bp)
chr contig_3372_pilon__uns (1148 bp)
chr contig_3373_pilon__uns (754 bp)
chr contig_3384_pilon__uns (783 bp)
chr contig_3389_pilon__uns (4477 bp)
chr contig_338_pilon__uns (124246 bp)
chr contig_3392_pilon__uns (963 bp)
chr contig_3396_pilon__uns (723 bp)
chr contig_3399_pilon__uns (1459 bp)
chr contig_3400_pilon__uns (570 bp)
chr contig_3402_pilon__uns (1591 bp)
chr contig_3405_pilon__uns (36874 bp)
chr contig_3406_pilon__uns (3141 bp)
chr contig_3407_pilon__uns (646 bp)
chr contig_3408_pilon__uns (819 bp)
chr contig_3410_pilon__uns (3795 bp)
chr contig_3412_pilon__uns (1602 bp)
chr contig_3415_pilon__uns (614 bp)
chr contig_3416_pilon__uns (4992 bp)
chr contig_3418_pilon__uns (1250 bp)
chr contig_3419_pilon__uns (3300 bp)
chr contig_3421_pilon__uns (798 bp)
chr contig_3422_pilon__uns (509 bp)
chr contig_3424_pilon__uns (5893 bp)
chr contig_3427_pilon__uns (1819 bp)
chr contig_3430_pilon__uns (670 bp)
chr contig_3431_pilon__uns (11459 bp)
chr contig_3432_pilon__uns (1950 bp)
chr contig_3433_pilon__uns (32025 bp)
chr contig_3435_pilon__uns (10888 bp)
chr contig_3436_pilon__uns (602 bp)
chr contig_3437_pilon__uns (1243 bp)
chr contig_3441_pilon__uns (960 bp)
chr contig_3442_pilon__uns (587 bp)
chr contig_3445_pilon__uns (2891 bp)
chr contig_3448_pilon__uns (26440 bp)
chr contig_3450_pilon__uns (1015 bp)
chr contig_3455_pilon__uns (6592 bp)
chr contig_3456_pilon__uns (18185 bp)
chr contig_3466_pilon__uns (601 bp)
chr contig_3467_pilon__uns (1562 bp)
chr contig_3470_pilon__uns (782 bp)
chr contig_3474_pilon__uns (610 bp)
chr contig_3475_pilon__uns (968 bp)
chr contig_3482_pilon__uns (929 bp)
chr contig_3484_pilon__uns (512 bp)
chr contig_3486_pilon__uns (2161 bp)
chr contig_3487_pilon__uns (547 bp)
chr contig_3488_pilon__uns (4700 bp)
chr contig_3489_pilon__uns (601 bp)
chr contig_3494_pilon__uns (2448 bp)
chr contig_3495_pilon__uns (10453 bp)
chr contig_3496_pilon__uns (4759 bp)
chr contig_3497_pilon__uns (10997 bp)
chr contig_3501_pilon__uns (893 bp)
chr contig_3504_pilon__uns (260 bp)
chr contig_3507_pilon__uns (4037 bp)
chr contig_3510_pilon__uns (566 bp)
chr contig_3514_pilon__uns (1085 bp)
chr contig_3521_pilon__uns (33996 bp)
chr contig_3524_pilon__uns (213 bp)
chr contig_3527_pilon__uns (680 bp)
chr contig_3528_pilon__uns (1675 bp)
chr contig_352_pilon__uns (11196 bp)
chr contig_3531_pilon__uns (4804 bp)
chr contig_3533_pilon__uns (2242 bp)
chr contig_3538_pilon__uns (939 bp)
chr contig_353_pilon__uns (100892 bp)
chr contig_3540_pilon__uns (882 bp)
chr contig_3541_pilon__uns (1416 bp)
chr contig_3544_pilon__uns (794 bp)
chr contig_3546_pilon__uns (1288 bp)
chr contig_3547_pilon__uns (1487 bp)
chr contig_3549_pilon__uns (736 bp)
chr contig_3552_pilon__uns (13390 bp)
chr contig_3553_pilon__uns (4396 bp)
chr contig_3558_pilon__uns (50239 bp)
chr contig_355_pilon__uns (40018 bp)
chr contig_3560_pilon__uns (718 bp)
chr contig_3562_pilon__uns (672 bp)
chr contig_3564_pilon__uns (2057 bp)
chr contig_3565_pilon__uns (490 bp)
chr contig_356_pilon__uns (71027 bp)
chr contig_3572_pilon__uns (38558 bp)
chr contig_3574_pilon__uns (577 bp)
chr contig_3575_pilon__uns (551 bp)
chr contig_3576_pilon__uns (312 bp)
chr contig_3578_pilon___frag_2___debris__uns (2001 bp)
chr contig_3579_pilon__uns (1588 bp)
chr contig_3580_pilon__uns (1695 bp)
chr contig_3582_pilon__uns (639 bp)
chr contig_3584_pilon__uns (1159 bp)
chr contig_3585_pilon__uns (4714 bp)
chr contig_3590_pilon__uns (4696 bp)
chr contig_3591_pilon__uns (539 bp)
chr contig_3592_pilon__uns (622 bp)
chr contig_3596_pilon__uns (1081 bp)
chr contig_3598_pilon__uns (6106 bp)
chr contig_3600_pilon__uns (39741 bp)
chr contig_3605_pilon__uns (485 bp)
chr contig_3606_pilon__uns (880 bp)
chr contig_3607_pilon__uns (502 bp)
chr contig_3608_pilon__uns (1211 bp)
chr contig_360_pilon__uns (5796 bp)
chr contig_3610_pilon__uns (1885 bp)
chr contig_3611_pilon__uns (4180 bp)
chr contig_3612_pilon__uns (615 bp)
chr contig_361_pilon__uns (15591 bp)
chr contig_3620_pilon__uns (692 bp)
chr contig_3624_pilon__uns (1299 bp)
chr contig_3625_pilon__uns (21166 bp)
chr contig_3628_pilon__uns (40175 bp)
chr contig_3629_pilon__uns (519 bp)
chr contig_3630_pilon__uns (5219 bp)
chr contig_3631_pilon__uns (978 bp)
chr contig_3632_pilon__uns (5773 bp)
chr contig_3636_pilon__uns (973 bp)
chr contig_3637_pilon__uns (1153 bp)
chr contig_3638_pilon__uns (567 bp)
chr contig_3639_pilon__uns (822 bp)
chr contig_363_pilon__uns (56351 bp)
chr contig_3640_pilon__uns (43035 bp)
chr contig_3641_pilon__uns (1063 bp)
chr contig_3643_pilon__uns (15629 bp)
chr contig_3644_pilon__uns (31686 bp)
chr contig_3648_pilon__uns (584 bp)
chr contig_364_pilon__uns (19907 bp)
chr contig_3657_pilon__uns (2480 bp)
chr contig_3659_pilon__uns (44926 bp)
chr contig_3660_pilon__uns (5026 bp)
chr contig_3661_pilon__uns (4450 bp)
chr contig_3665_pilon__uns (799 bp)
chr contig_3667_pilon__uns (2197 bp)
chr contig_3669_pilon__uns (686 bp)
chr contig_3670_pilon__uns (510 bp)
chr contig_3671_pilon__uns (3665 bp)
chr contig_3672_pilon__uns (11355 bp)
chr contig_3674_pilon__uns (696 bp)
chr contig_3677_pilon__uns (1942 bp)
chr contig_3678_pilon__uns (1214 bp)
chr contig_3679_pilon__uns (13597 bp)
chr contig_367_pilon__uns (127737 bp)
chr contig_3680_pilon__uns (507 bp)
chr contig_3682_pilon__uns (1203 bp)
chr contig_3683_pilon__uns (1123 bp)
chr contig_3684_pilon__uns (1598 bp)
chr contig_3687_pilon__uns (1061 bp)
chr contig_3689_pilon__uns (10413 bp)
chr contig_3691_pilon__uns (233 bp)
chr contig_3694_pilon__uns (983 bp)
chr contig_3696_pilon__uns (1514 bp)
chr contig_3704_pilon__uns (279 bp)
chr contig_3705_pilon__uns (612 bp)
chr contig_3707_pilon__uns (315 bp)
chr contig_370_pilon__uns (14427 bp)
chr contig_3711_pilon__uns (1165 bp)
chr contig_3714_pilon__uns (5864 bp)
chr contig_3715_pilon__uns (1421 bp)
chr contig_3716_pilon__uns (565 bp)
chr contig_3719_pilon__uns (1759 bp)
chr contig_3720_pilon__uns (1428 bp)
chr contig_3723_pilon__uns (22387 bp)
chr contig_3724_pilon__uns (73450 bp)
chr contig_3725_pilon__uns (492 bp)
chr contig_3726_pilon__uns (2384 bp)
chr contig_3727_pilon__uns (1029 bp)
chr contig_3728_pilon__uns (25413 bp)
chr contig_372_pilon__uns (157673 bp)
chr contig_3731_pilon__uns (624 bp)
chr contig_3732_pilon__uns (57763 bp)
chr contig_3733_pilon__uns (1689 bp)
chr contig_3734_pilon__uns (2249 bp)
chr contig_3735_pilon__uns (1958 bp)
chr contig_3736_pilon__uns (4839 bp)
chr contig_3737_pilon__uns (858 bp)
chr contig_3739_pilon__uns (1386 bp)
chr contig_3740_pilon__uns (4942 bp)
chr contig_3741_pilon__uns (2920 bp)
chr contig_3742_pilon__uns (1745 bp)
chr contig_3743_pilon__uns (4763 bp)
chr contig_3746_pilon__uns (1629 bp)
chr contig_3749_pilon__uns (1045 bp)
chr contig_3750_pilon__uns (426 bp)
chr contig_3753_pilon__uns (1173 bp)
chr contig_3754_pilon__uns (1082 bp)
chr contig_3755_pilon__uns (1263 bp)
chr contig_3756_pilon__uns (8369 bp)
chr contig_3758_pilon__uns (18983 bp)
chr contig_3761_pilon__uns (596 bp)
chr contig_3763_pilon__uns (2008 bp)
chr contig_3764_pilon__uns (12152 bp)
chr contig_3765_pilon__uns (42808 bp)
chr contig_3766_pilon__uns (2227 bp)
chr contig_3770_pilon__uns (2446 bp)
chr contig_3772_pilon__uns (23436 bp)
chr contig_3773_pilon__uns (1113 bp)
chr contig_3774_pilon__uns (402 bp)
chr contig_3775_pilon__uns (1196 bp)
chr contig_3776_pilon__uns (1415 bp)
chr contig_3777_pilon__uns (501 bp)
chr contig_3778_pilon__uns (872 bp)
chr contig_3779_pilon__uns (78302 bp)
chr contig_377_pilon__uns (24607 bp)
chr contig_3780_pilon__uns (15953 bp)
chr contig_3781_pilon__uns (202064 bp)
chr contig_3782_pilon__uns (483 bp)
chr contig_3783_pilon__uns (1545 bp)
chr contig_3784_pilon__uns (27087 bp)
chr contig_3785_pilon__uns (768 bp)
chr contig_3789_pilon__uns (5655 bp)
chr contig_3790_pilon__uns (654 bp)
chr contig_3791_pilon__uns (1361 bp)
chr contig_3793_pilon__uns (50121 bp)
chr contig_3794_pilon__uns (987 bp)
chr contig_3797_pilon__uns (2240 bp)
chr contig_3801_pilon__uns (1987 bp)
chr contig_3804_pilon__uns (997 bp)
chr contig_3805_pilon__uns (2138 bp)
chr contig_3806_pilon__uns (2907 bp)
chr contig_3809_pilon__uns (813 bp)
chr contig_3811_pilon__uns (1099 bp)
chr contig_3812_pilon__uns (39563 bp)
chr contig_3814_pilon__uns (24788 bp)
chr contig_3815_pilon__uns (12615 bp)
chr contig_3818_pilon__uns (4198 bp)
chr contig_3819_pilon__uns (3391 bp)
chr contig_3824_pilon__uns (16996 bp)
chr contig_3825_pilon__uns (836 bp)
chr contig_3826_pilon__uns (1701 bp)
chr contig_3828_pilon__uns (2465 bp)
chr contig_3829_pilon__uns (2402 bp)
chr contig_382_pilon__uns (89959 bp)
chr contig_3830_pilon__uns (3712 bp)
chr contig_3832_pilon__uns (104852 bp)
chr contig_3834_pilon__uns (27327 bp)
chr contig_3835_pilon__uns (1951 bp)
chr contig_3837_pilon__uns (7878 bp)
chr contig_3838_pilon__uns (2105 bp)
chr contig_3841_pilon__uns (1285 bp)
chr contig_3843_pilon__uns (1022 bp)
chr contig_3844_pilon__uns (254 bp)
chr contig_3845_pilon__uns (720 bp)
chr contig_3847_pilon__uns (1241 bp)
chr contig_3849_pilon__uns (515 bp)
chr contig_3853_pilon__uns (1190 bp)
chr contig_3855_pilon__uns (554 bp)
chr contig_3856_pilon__uns (2030 bp)
chr contig_3858_pilon__uns (796 bp)
chr contig_3859_pilon__uns (1122 bp)
chr contig_385_pilon___frag_2___debris__uns (5001 bp)
chr contig_3860_pilon__uns (1342 bp)
chr contig_3862_pilon__uns (847 bp)
chr contig_3863_pilon__uns (871 bp)
chr contig_3864_pilon__uns (1510 bp)
chr contig_3866_pilon__uns (1256 bp)
chr contig_3867_pilon__uns (842 bp)
chr contig_3869_pilon__uns (1036 bp)
chr contig_3871_pilon__uns (631 bp)
chr contig_3873_pilon__uns (744 bp)
chr contig_3876_pilon__uns (988 bp)
chr contig_3878_pilon__uns (4230 bp)
chr contig_3881_pilon__uns (1270 bp)
chr contig_3883_pilon__uns (11381 bp)
chr contig_3884_pilon__uns (1557 bp)
chr contig_3889_pilon__uns (27275 bp)
chr contig_388_pilon___frag_1__uns (237430 bp)
chr contig_388_pilon___frag_2___debris__uns (5001 bp)
chr contig_388_pilon___frag_3__uns (73001 bp)
chr contig_388_pilon___frag_4___debris__uns (5001 bp)
chr contig_388_pilon___frag_5__uns (135237 bp)
chr contig_3892_pilon__uns (14424 bp)
chr contig_3896_pilon__uns (558 bp)
chr contig_389_pilon__uns (158705 bp)
chr contig_3905_pilon__uns (9989 bp)
chr contig_390_pilon__uns (23029 bp)
chr contig_3911_pilon__uns (559 bp)
chr contig_3912_pilon__uns (11374 bp)
chr contig_3929_pilon__uns (1815 bp)
chr contig_392_pilon__uns (14492 bp)
chr contig_3938_pilon__uns (847 bp)
chr contig_3939_pilon__uns (1114 bp)
chr contig_3941_pilon__uns (503 bp)
chr contig_3947_pilon__uns (579 bp)
chr contig_3952_pilon__uns (2214 bp)
chr contig_3954_pilon__uns (951 bp)
chr contig_3958_pilon__uns (597 bp)
chr contig_3959_pilon__uns (759 bp)
chr contig_395_pilon__uns (150415 bp)
chr contig_3960_pilon__uns (1656 bp)
chr contig_3963_pilon__uns (14275 bp)
chr contig_3964_pilon__uns (18858 bp)
chr contig_3967_pilon__uns (525 bp)
chr contig_396_pilon__uns (103814 bp)
chr contig_3981_pilon__uns (12804 bp)
chr contig_3982_pilon__uns (537 bp)
chr contig_3985_pilon__uns (56993 bp)
chr contig_3987_pilon__uns (776 bp)
chr contig_3989_pilon__uns (8215 bp)
chr contig_3996_pilon__uns (195368 bp)
chr contig_3997_pilon__uns (216 bp)
chr contig_3998_pilon__uns (602 bp)
chr contig_39_pilon__uns (10916 bp)
chr contig_3_pilon__uns (10510 bp)
chr contig_4000_pilon__uns (14147 bp)
chr contig_4011_pilon__uns (575 bp)
chr contig_4015_pilon__uns (2903 bp)
chr contig_401_pilon__uns (11163 bp)
chr contig_4034_pilon__uns (1003 bp)
chr contig_4036_pilon__uns (836 bp)
chr contig_4039_pilon__uns (3506 bp)
chr contig_4042_pilon__uns (10314 bp)
chr contig_4056_pilon__uns (5933 bp)
chr contig_4067_pilon__uns (205694 bp)
chr contig_4069_pilon__uns (3935 bp)
chr contig_4074_pilon__uns (5660 bp)
chr contig_407_pilon__uns (35907 bp)
chr contig_4081_pilon__uns (737 bp)
chr contig_4082_pilon__uns (928 bp)
chr contig_4083_pilon__uns (27688 bp)
chr contig_4089_pilon__uns (1739 bp)
chr contig_4091_pilon__uns (13450 bp)
chr contig_4092_pilon__uns (6766 bp)
chr contig_40_pilon__uns (8315 bp)
chr contig_4100_pilon__uns (7980 bp)
chr contig_4105_pilon__uns (20120 bp)
chr contig_4109_pilon__uns (6193 bp)
chr contig_4111_pilon__uns (745 bp)
chr contig_4115_pilon__uns (4803 bp)
chr contig_4118_pilon__uns (6176 bp)
chr contig_4120_pilon___frag_2___debris__uns (3001 bp)
chr contig_4126_pilon__uns (57632 bp)
chr contig_4132_pilon__uns (23163 bp)
chr contig_4135_pilon__uns (995 bp)
chr contig_4138_pilon__uns (5293 bp)
chr contig_4139_pilon__uns (5930 bp)
chr contig_4141_pilon__uns (4414 bp)
chr contig_4148_pilon__uns (2393 bp)
chr contig_414_pilon__uns (226694 bp)
chr contig_4152_pilon__uns (2682 bp)
chr contig_4157_pilon__uns (84522 bp)
chr contig_415_pilon__uns (6660 bp)
chr contig_4161_pilon__uns (8311 bp)
chr contig_4163_pilon__uns (2194 bp)
chr contig_4165_pilon__uns (1743 bp)
chr contig_4169_pilon__uns (49944 bp)
chr contig_4182_pilon__uns (240319 bp)
chr contig_4188_pilon__uns (8617 bp)
chr contig_4189_pilon__uns (2558 bp)
chr contig_418_pilon__uns (58668 bp)
chr contig_4192_pilon__uns (30859 bp)
chr contig_4197_pilon__uns (3951 bp)
chr contig_4202_pilon__uns (5844 bp)
chr contig_4203_pilon__uns (42289 bp)
chr contig_420_pilon__uns (24873 bp)
chr contig_4212_pilon__uns (292548 bp)
chr contig_4213_pilon__uns (5307 bp)
chr contig_4217_pilon__uns (16392 bp)
chr contig_421_pilon__uns (20849 bp)
chr contig_4221_pilon__uns (1478 bp)
chr contig_4224_pilon__uns (11763 bp)
chr contig_4225_pilon__uns (1985 bp)
chr contig_4226_pilon___frag_2___debris__uns (2001 bp)
chr contig_4226_pilon___frag_3__uns (33010 bp)
chr contig_4227_pilon__uns (34299 bp)
chr contig_4229_pilon__uns (10050 bp)
chr contig_422_pilon__uns (54879 bp)
chr contig_4231_pilon__uns (4099 bp)
chr contig_4234_pilon__uns (9652 bp)
chr contig_4237_pilon__uns (1877 bp)
chr contig_423_pilon__uns (21082 bp)
chr contig_4242_pilon__uns (7754 bp)
chr contig_4244_pilon__uns (5600 bp)
chr contig_4246_pilon__uns (103767 bp)
chr contig_424_pilon__uns (26297 bp)
chr contig_4256_pilon__uns (27642 bp)
chr contig_4257_pilon__uns (90525 bp)
chr contig_4261_pilon__uns (14421 bp)
chr contig_4263_pilon__uns (4250 bp)
chr contig_4267_pilon__uns (168836 bp)
chr contig_4268_pilon__uns (98293 bp)
chr contig_4270_pilon__uns (18954 bp)
chr contig_4271_pilon__uns (1919 bp)
chr contig_4272_pilon__uns (2978 bp)
chr contig_4274_pilon__uns (207802 bp)
chr contig_4280_pilon__uns (551 bp)
chr contig_4281_pilon__uns (63691 bp)
chr contig_4285_pilon__uns (23448 bp)
chr contig_4287_pilon__uns (98631 bp)
chr contig_4291_pilon__uns (23961 bp)
chr contig_4294_pilon__uns (16223 bp)
chr contig_4295_pilon__uns (3452 bp)
chr contig_4297_pilon__uns (23543 bp)
chr contig_429_pilon__uns (44290 bp)
chr contig_4301_pilon__uns (5525 bp)
chr contig_4307_pilon__uns (12749 bp)
chr contig_4314_pilon__uns (481 bp)
chr contig_4319_pilon__uns (15845 bp)
chr contig_4324_pilon__uns (2330 bp)
chr contig_4326_pilon__uns (14382 bp)
chr contig_4328_pilon__uns (91484 bp)
chr contig_4335_pilon__uns (154880 bp)
chr contig_4336_pilon__uns (61379 bp)
chr contig_4340_pilon__uns (4014 bp)
chr contig_4342_pilon__uns (3439 bp)
chr contig_4345_pilon__uns (35975 bp)
chr contig_4347_pilon__uns (2311 bp)
chr contig_4350_pilon__uns (7199 bp)
chr contig_4353_pilon__uns (19416 bp)
chr contig_4356_pilon__uns (35233 bp)
chr contig_435_pilon__uns (24397 bp)
chr contig_4377_pilon__uns (624 bp)
chr contig_4378_pilon__uns (98197 bp)
chr contig_437_pilon__uns (11035 bp)
chr contig_4380_pilon__uns (28949 bp)
chr contig_4389_pilon__uns (115908 bp)
chr contig_4391_pilon__uns (4832 bp)
chr contig_4392_pilon___frag_1__uns (55376 bp)
chr contig_4392_pilon___frag_2___debris__uns (5001 bp)
chr contig_4392_pilon___frag_3__uns (32250 bp)
chr contig_4394_pilon__uns (55173 bp)
chr contig_4397_pilon__uns (1083 bp)
chr contig_4401_pilon___frag_1__uns (128389 bp)
chr contig_4401_pilon___frag_2___debris__uns (1001 bp)
chr contig_4401_pilon___frag_3__uns (18001 bp)
chr contig_4401_pilon___frag_4___debris__uns (1001 bp)
chr contig_4401_pilon___frag_5__uns (104394 bp)
chr contig_4404_pilon__uns (2633 bp)
chr contig_4406_pilon__uns (79444 bp)
chr contig_4408_pilon__uns (829 bp)
chr contig_440_pilon__uns (166917 bp)
chr contig_4412_pilon__uns (25487 bp)
chr contig_4413_pilon__uns (58953 bp)
chr contig_4416_pilon__uns (14793 bp)
chr contig_4424_pilon___frag_2___debris__uns (5001 bp)
chr contig_4426_pilon__uns (3302 bp)
chr contig_4427_pilon__uns (52525 bp)
chr contig_442_pilon__uns (37193 bp)
chr contig_4435_pilon__uns (42965 bp)
chr contig_4441_pilon__uns (136249 bp)
chr contig_444_pilon___frag_1__uns (21570 bp)
chr contig_444_pilon___frag_10___debris__uns (1001 bp)
chr contig_444_pilon___frag_11__uns (102466 bp)
chr contig_444_pilon___frag_2___debris__uns (1001 bp)
chr contig_444_pilon___frag_3__uns (21001 bp)
chr contig_444_pilon___frag_4___debris__uns (1001 bp)
chr contig_444_pilon___frag_5__uns (22001 bp)
chr contig_444_pilon___frag_6___debris__uns (1001 bp)
chr contig_444_pilon___frag_7__uns (36001 bp)
chr contig_444_pilon___frag_8___debris__uns (1001 bp)
chr contig_444_pilon___frag_9___frag_1__uns (22995 bp)
chr contig_444_pilon___frag_9___frag_2___debris__uns (5001 bp)
chr contig_444_pilon___frag_9___frag_3__uns (47150 bp)
chr contig_4451_pilon__uns (20514 bp)
chr contig_4456_pilon__uns (744 bp)
chr contig_4460_pilon__uns (256227 bp)
chr contig_4464_pilon__uns (53285 bp)
chr contig_4466_pilon__uns (59881 bp)
chr contig_4468_pilon__uns (219392 bp)
chr contig_4469_pilon__uns (2751 bp)
chr contig_446_pilon__uns (15341 bp)
chr contig_4471_pilon__uns (16199 bp)
chr contig_4472_pilon__uns (4344 bp)
chr contig_4480_pilon__uns (62477 bp)
chr contig_4494_pilon__uns (483 bp)
chr contig_4496_pilon__uns (512 bp)
chr contig_4506_pilon__uns (144629 bp)
chr contig_4510_pilon__uns (814 bp)
chr contig_4517_pilon__uns (199088 bp)
chr contig_4519_pilon__uns (160735 bp)
chr contig_4520_pilon___frag_2___debris__uns (5001 bp)
chr contig_4524_pilon__uns (650 bp)
chr contig_4530_pilon__uns (87169 bp)
chr contig_4535_pilon__uns (494 bp)
chr contig_4539_pilon__uns (28181 bp)
chr contig_453_pilon__uns (1482 bp)
chr contig_4540_pilon__uns (94444 bp)
chr contig_4554_pilon__uns (1276 bp)
chr contig_456_pilon___frag_2___debris__uns (5001 bp)
chr contig_4570_pilon__uns (117653 bp)
chr contig_4571_pilon__uns (1359 bp)
chr contig_4583_pilon__uns (12161 bp)
chr contig_4586_pilon__uns (13415 bp)
chr contig_4588_pilon___frag_2___debris__uns (5001 bp)
chr contig_4602_pilon__uns (24373 bp)
chr contig_4610_pilon__uns (1569 bp)
chr contig_4618_pilon__uns (163587 bp)
chr contig_4619_pilon__uns (2103 bp)
chr contig_4623_pilon__uns (57322 bp)
chr contig_4634_pilon__uns (2321 bp)
chr contig_4636_pilon__uns (1989 bp)
chr contig_4641_pilon__uns (2303 bp)
chr contig_4643_pilon__uns (22046 bp)
chr contig_4644_pilon__uns (844 bp)
chr contig_4647_pilon__uns (5675 bp)
chr contig_464_pilon__uns (123656 bp)
chr contig_4663_pilon__uns (119416 bp)
chr contig_4664_pilon__uns (45920 bp)
chr contig_4667_pilon__uns (82309 bp)
chr contig_4672_pilon__uns (172258 bp)
chr contig_4678_pilon__uns (51903 bp)
chr contig_4680_pilon___frag_1__uns (24015 bp)
chr contig_4680_pilon___frag_2___debris__uns (2001 bp)
chr contig_4680_pilon___frag_3__uns (32945 bp)
chr contig_4680_pilon___frag_4___debris__uns (5001 bp)
chr contig_4693_pilon__uns (6416 bp)
chr contig_4707_pilon__uns (70546 bp)
chr contig_4709_pilon__uns (33590 bp)
chr contig_4718_pilon__uns (1654 bp)
chr contig_4727_pilon__uns (6347 bp)
chr contig_4728_pilon___frag_1__uns (101617 bp)
chr contig_4728_pilon___frag_2___debris__uns (5001 bp)
chr contig_4731_pilon__uns (10152 bp)
chr contig_4733_pilon__uns (138293 bp)
chr contig_4741_pilon__uns (30675 bp)
chr contig_4742_pilon__uns (827 bp)
chr contig_4752_pilon__uns (693 bp)
chr contig_4757_pilon__uns (89581 bp)
chr contig_4763_pilon__uns (119212 bp)
chr contig_4765_pilon__uns (662 bp)
chr contig_476_pilon__uns (79115 bp)
chr contig_4771_pilon__uns (144614 bp)
chr contig_4773_pilon__uns (4885 bp)
chr contig_4774_pilon__uns (515 bp)
chr contig_4779_pilon__uns (28812 bp)
chr contig_477_pilon__uns (39187 bp)
chr contig_4802_pilon__uns (32128 bp)
chr contig_4803_pilon__uns (66147 bp)
chr contig_4805_pilon__uns (628 bp)
chr contig_4809_pilon__uns (7202 bp)
chr contig_480_pilon__uns (5031 bp)
chr contig_4811_pilon__uns (2905 bp)
chr contig_4812_pilon__uns (3429 bp)
chr contig_4814_pilon__uns (6209 bp)
chr contig_4820_pilon__uns (6829 bp)
chr contig_4821_pilon__uns (18367 bp)
chr contig_4829_pilon__uns (947 bp)
chr contig_482_pilon__uns (179811 bp)
chr contig_4830_pilon__uns (3240 bp)
chr contig_4834_pilon__uns (31766 bp)
chr contig_4843_pilon__uns (376489 bp)
chr contig_4854_pilon__uns (62177 bp)
chr contig_4859_pilon__uns (28092 bp)
chr contig_485_pilon__uns (71298 bp)
chr contig_486_pilon__uns (80004 bp)
chr contig_4873_pilon__uns (544 bp)
chr contig_4877_pilon__uns (24718 bp)
chr contig_4888_pilon__uns (3609 bp)
chr contig_4894_pilon__uns (2076 bp)
chr contig_489_pilon__uns (22784 bp)
chr contig_4904_pilon__uns (4038 bp)
chr contig_4905_pilon__uns (586 bp)
chr contig_4909_pilon__uns (839 bp)
chr contig_4915_pilon__uns (5315 bp)
chr contig_4919_pilon__uns (3801 bp)
chr contig_4927_pilon__uns (2369 bp)
chr contig_4929_pilon__uns (835 bp)
chr contig_4936_pilon__uns (52193 bp)
chr contig_4938_pilon__uns (192080 bp)
chr contig_4941_pilon__uns (4642 bp)
chr contig_4942_pilon__uns (112700 bp)
chr contig_4944_pilon__uns (23664 bp)
chr contig_4947_pilon__uns (24962 bp)
chr contig_4950_pilon__uns (60704 bp)
chr contig_4953_pilon__uns (564 bp)
chr contig_4955_pilon__uns (93394 bp)
chr contig_4965_pilon__uns (10423 bp)
chr contig_4966_pilon__uns (56459 bp)
chr contig_4968_pilon___frag_2___debris__uns (3001 bp)
chr contig_4970_pilon__uns (22686 bp)
chr contig_4972_pilon__uns (1638 bp)
chr contig_497_pilon__uns (42043 bp)
chr contig_4996_pilon__uns (5519 bp)
chr contig_4999_pilon__uns (4188 bp)
chr contig_499_pilon__uns (5025 bp)
chr contig_49_pilon__uns (46608 bp)
chr contig_5002_pilon__uns (94934 bp)
chr contig_5003_pilon__uns (5721 bp)
chr contig_5007_pilon__uns (790 bp)
chr contig_5014_pilon__uns (83131 bp)
chr contig_5015_pilon__uns (76564 bp)
chr contig_5018_pilon__uns (809 bp)
chr contig_5019_pilon__uns (4071 bp)
chr contig_5025_pilon__uns (59756 bp)
chr contig_5029_pilon__uns (11500 bp)
chr contig_5034_pilon__uns (4351 bp)
chr contig_5036_pilon__uns (4807 bp)
chr contig_5042_pilon__uns (244490 bp)
chr contig_5043_pilon__uns (716 bp)
chr contig_5049_pilon__uns (731 bp)
chr contig_5053_pilon__uns (12664 bp)
chr contig_5058_pilon__uns (583 bp)
chr contig_5059_pilon__uns (23397 bp)
chr contig_505_pilon__uns (1654 bp)
chr contig_5065_pilon__uns (31098 bp)
chr contig_5066_pilon__uns (94498 bp)
chr contig_5070_pilon__uns (122384 bp)
chr contig_5071_pilon__uns (1139 bp)
chr contig_5074_pilon__uns (2759 bp)
chr contig_5081_pilon__uns (24613 bp)
chr contig_5082_pilon__uns (6804 bp)
chr contig_5084_pilon__uns (1484 bp)
chr contig_5090_pilon__uns (64536 bp)
chr contig_5093_pilon__uns (1642 bp)
chr contig_5099_pilon__uns (88863 bp)
chr contig_50_pilon__uns (180563 bp)
chr contig_5107_pilon__uns (3615 bp)
chr contig_5112_pilon__uns (33674 bp)
chr contig_5118_pilon__uns (585 bp)
chr contig_5119_pilon__uns (3834 bp)
chr contig_511_pilon__uns (4140 bp)
chr contig_5123_pilon___frag_1__uns (196648 bp)
chr contig_5123_pilon___frag_2___debris__uns (2001 bp)
chr contig_5126_pilon__uns (31139 bp)
chr contig_5127_pilon__uns (122358 bp)
chr contig_5132_pilon__uns (894 bp)
chr contig_5135_pilon___frag_2___debris__uns (1001 bp)
chr contig_5135_pilon___frag_3__uns (242641 bp)
chr contig_5138_pilon__uns (5606 bp)
chr contig_5144_pilon__uns (580 bp)
chr contig_5149_pilon__uns (21050 bp)
chr contig_514_pilon__uns (67786 bp)
chr contig_5160_pilon__uns (117768 bp)
chr contig_5162_pilon__uns (3104 bp)
chr contig_5175_pilon__uns (44872 bp)
chr contig_5176_pilon__uns (550 bp)
chr contig_5178_pilon__uns (51620 bp)
chr contig_5183_pilon__uns (11102 bp)
chr contig_5190_pilon__uns (257161 bp)
chr contig_5193_pilon__uns (616 bp)
chr contig_5195_pilon__uns (4133 bp)
chr contig_5198_pilon__uns (6755 bp)
chr contig_5211_pilon__uns (121424 bp)
chr contig_5213_pilon___frag_2___debris__uns (5001 bp)
chr contig_5223_pilon__uns (1984 bp)
chr contig_5226_pilon__uns (150949 bp)
chr contig_522_pilon__uns (5974 bp)
chr contig_5235_pilon__uns (1723 bp)
chr contig_5236_pilon__uns (49028 bp)
chr contig_5237_pilon__uns (321 bp)
chr contig_523_pilon___frag_1__uns (26878 bp)
chr contig_523_pilon___frag_2___debris__uns (5001 bp)
chr contig_523_pilon___frag_3__uns (53134 bp)
chr contig_5244_pilon__uns (762 bp)
chr contig_5246_pilon__uns (72901 bp)
chr contig_5250_pilon__uns (6668 bp)
chr contig_5253_pilon__uns (559 bp)
chr contig_5257_pilon__uns (1798 bp)
chr contig_5258_pilon__uns (38282 bp)
chr contig_5259_pilon__uns (895 bp)
chr contig_5262_pilon__uns (6119 bp)
chr contig_5266_pilon__uns (1321 bp)
chr contig_5272_pilon__uns (3336 bp)
chr contig_5274_pilon__uns (593 bp)
chr contig_5276_pilon__uns (54555 bp)
chr contig_5286_pilon__uns (99766 bp)
chr contig_5295_pilon__uns (129209 bp)
chr contig_5299_pilon__uns (147086 bp)
chr contig_5306_pilon__uns (681 bp)
chr contig_533_pilon___frag_2___debris__uns (5001 bp)
chr contig_5343_pilon__uns (1378 bp)
chr contig_5345_pilon__uns (6258 bp)
chr contig_5354_pilon__uns (18613 bp)
chr contig_5357_pilon___frag_1__uns (101300 bp)
chr contig_5357_pilon___frag_2___debris__uns (3001 bp)
chr contig_535_pilon__uns (7848 bp)
chr contig_5363_pilon__uns (77528 bp)
chr contig_5366_pilon__uns (2543 bp)
chr contig_5373_pilon__uns (39485 bp)
chr contig_5379_pilon__uns (305079 bp)
chr contig_5388_pilon__uns (39926 bp)
chr contig_5394_pilon__uns (1669 bp)
chr contig_5397_pilon__uns (5122 bp)
chr contig_5398_pilon__uns (81776 bp)
chr contig_539_pilon__uns (46889 bp)
chr contig_5408_pilon__uns (11438 bp)
chr contig_5409_pilon__uns (887 bp)
chr contig_540_pilon__uns (82795 bp)
chr contig_5411_pilon__uns (324 bp)
chr contig_5412_pilon__uns (549 bp)
chr contig_5414_pilon__uns (76913 bp)
chr contig_5415_pilon__uns (109233 bp)
chr contig_5427_pilon__uns (4598 bp)
chr contig_5431_pilon__uns (4967 bp)
chr contig_5434_pilon__uns (114223 bp)
chr contig_5436_pilon__uns (21747 bp)
chr contig_5437_pilon__uns (33222 bp)
chr contig_543_pilon__uns (52447 bp)
chr contig_5443_pilon__uns (3650 bp)
chr contig_5444_pilon__uns (34386 bp)
chr contig_5446_pilon__uns (43204 bp)
chr contig_5451_pilon__uns (4049 bp)
chr contig_5456_pilon__uns (596 bp)
chr contig_5458_pilon__uns (12020 bp)
chr contig_5479_pilon__uns (116642 bp)
chr contig_547_pilon__uns (118856 bp)
chr contig_548_pilon__uns (17798 bp)
chr contig_5493_pilon__uns (2548 bp)
chr contig_5499_pilon__uns (27751 bp)
chr contig_54_pilon__uns (49657 bp)
chr contig_5504_pilon__uns (1695 bp)
chr contig_5522_pilon__uns (65556 bp)
chr contig_5526_pilon__uns (71090 bp)
chr contig_5532_pilon__uns (34374 bp)
chr contig_5533_pilon__uns (3133 bp)
chr contig_5537_pilon__uns (611 bp)
chr contig_5540_pilon__uns (4720 bp)
chr contig_5562_pilon__uns (5452 bp)
chr contig_5564_pilon__uns (702 bp)
chr contig_5565_pilon__uns (174561 bp)
chr contig_5571_pilon__uns (106782 bp)
chr contig_5583_pilon__uns (3138 bp)
chr contig_5586_pilon__uns (476 bp)
chr contig_5587_pilon__uns (104032 bp)
chr contig_5589_pilon__uns (24769 bp)
chr contig_5590_pilon__uns (16952 bp)
chr contig_5593_pilon__uns (6210 bp)
chr contig_5594_pilon__uns (22206 bp)
chr contig_5596_pilon__uns (107825 bp)
chr contig_5603_pilon__uns (951 bp)
chr contig_5606_pilon__uns (938 bp)
chr contig_5609_pilon__uns (45291 bp)
chr contig_5620_pilon__uns (10437 bp)
chr contig_5623_pilon__uns (61354 bp)
chr contig_5630_pilon__uns (27357 bp)
chr contig_5631_pilon__uns (2496 bp)
chr contig_5634_pilon__uns (56971 bp)
chr contig_5637_pilon__uns (126125 bp)
chr contig_5641_pilon__uns (750 bp)
chr contig_5645_pilon__uns (2010 bp)
chr contig_5647_pilon__uns (52228 bp)
chr contig_5649_pilon__uns (5086 bp)
chr contig_564_pilon__uns (18162 bp)
chr contig_5652_pilon__uns (3617 bp)
chr contig_5653_pilon__uns (693 bp)
chr contig_5656_pilon__uns (9043 bp)
chr contig_5657_pilon__uns (92710 bp)
chr contig_5658_pilon__uns (1132 bp)
chr contig_5669_pilon__uns (222 bp)
chr contig_5676_pilon__uns (7689 bp)
chr contig_5678_pilon__uns (6422 bp)
chr contig_5679_pilon__uns (50216 bp)
chr contig_567_pilon__uns (1351 bp)
chr contig_5681_pilon__uns (4961 bp)
chr contig_5688_pilon__uns (58831 bp)
chr contig_5689_pilon__uns (11544 bp)
chr contig_5693_pilon__uns (468 bp)
chr contig_5696_pilon__uns (51080 bp)
chr contig_5706_pilon__uns (618 bp)
chr contig_5708_pilon__uns (32621 bp)
chr contig_5713_pilon__uns (223466 bp)
chr contig_5714_pilon__uns (76167 bp)
chr contig_5715_pilon__uns (105358 bp)
chr contig_5717_pilon__uns (38050 bp)
chr contig_5718_pilon__uns (29234 bp)
chr contig_5719_pilon__uns (2335 bp)
chr contig_5729_pilon__uns (5345 bp)
chr contig_572_pilon__uns (24910 bp)
chr contig_5736_pilon__uns (77140 bp)
chr contig_5742_pilon__uns (4619 bp)
chr contig_5746_pilon__uns (102177 bp)
chr contig_5748_pilon__uns (204842 bp)
chr contig_574_pilon__uns (10892 bp)
chr contig_5751_pilon__uns (14154 bp)
chr contig_5752_pilon__uns (3408 bp)
chr contig_5756_pilon__uns (517 bp)
chr contig_5758_pilon__uns (75221 bp)
chr contig_5765_pilon__uns (116927 bp)
chr contig_5768_pilon__uns (11798 bp)
chr contig_5773_pilon__uns (3444 bp)
chr contig_5775_pilon__uns (5339 bp)
chr contig_5777_pilon__uns (2556 bp)
chr contig_5778_pilon__uns (1032 bp)
chr contig_5782_pilon__uns (14978 bp)
chr contig_5784_pilon__uns (53594 bp)
chr contig_5791_pilon__uns (1299 bp)
chr contig_5792_pilon__uns (664 bp)
chr contig_5793_pilon__uns (15568 bp)
chr contig_5794_pilon__uns (1686 bp)
chr contig_5796_pilon__uns (66966 bp)
chr contig_5799_pilon__uns (25744 bp)
chr contig_579_pilon__uns (5005 bp)
chr contig_5800_pilon__uns (13249 bp)
chr contig_5801_pilon__uns (9384 bp)
chr contig_5802_pilon__uns (122422 bp)
chr contig_5803_pilon__uns (23610 bp)
chr contig_580_pilon__uns (847 bp)
chr contig_5812_pilon__uns (527 bp)
chr contig_5813_pilon__uns (3327 bp)
chr contig_5818_pilon__uns (15565 bp)
chr contig_5819_pilon__uns (1082 bp)
chr contig_581_pilon__uns (2643 bp)
chr contig_5824_pilon___frag_1__uns (43313 bp)
chr contig_5824_pilon___frag_2___debris__uns (3001 bp)
chr contig_5824_pilon___frag_3__uns (18760 bp)
chr contig_5825_pilon__uns (4282 bp)
chr contig_5828_pilon__uns (112721 bp)
chr contig_5829_pilon__uns (100643 bp)
chr contig_5831_pilon__uns (2144 bp)
chr contig_5833_pilon__uns (99663 bp)
chr contig_5834_pilon__uns (2355 bp)
chr contig_5835_pilon__uns (429 bp)
chr contig_5844_pilon__uns (45950 bp)
chr contig_5845_pilon__uns (46947 bp)
chr contig_5846_pilon__uns (70873 bp)
chr contig_5848_pilon__uns (8228 bp)
chr contig_5849_pilon__uns (57519 bp)
chr contig_5851_pilon__uns (7026 bp)
chr contig_5854_pilon__uns (78203 bp)
chr contig_5856_pilon__uns (565 bp)
chr contig_5858_pilon__uns (825 bp)
chr contig_585_pilon__uns (106065 bp)
chr contig_5861_pilon__uns (3076 bp)
chr contig_5865_pilon__uns (767 bp)
chr contig_5867_pilon__uns (1843 bp)
chr contig_5873_pilon__uns (93917 bp)
chr contig_5877_pilon__uns (3886 bp)
chr contig_5878_pilon__uns (902 bp)
chr contig_5883_pilon__uns (4709 bp)
chr contig_5885_pilon__uns (1502 bp)
chr contig_5886_pilon__uns (724 bp)
chr contig_5889_pilon__uns (7760 bp)
chr contig_5890_pilon__uns (745 bp)
chr contig_5892_pilon__uns (107109 bp)
chr contig_5894_pilon__uns (40245 bp)
chr contig_5896_pilon__uns (109296 bp)
chr contig_5897_pilon__uns (3209 bp)
chr contig_5899_pilon__uns (604 bp)
chr contig_58_pilon__uns (45492 bp)
chr contig_5900_pilon__uns (1907 bp)
chr contig_5904_pilon__uns (20115 bp)
chr contig_5906_pilon__uns (4044 bp)
chr contig_590_pilon__uns (37829 bp)
chr contig_5911_pilon__uns (431 bp)
chr contig_5914_pilon__uns (1822 bp)
chr contig_5916_pilon__uns (67259 bp)
chr contig_5918_pilon__uns (67361 bp)
chr contig_5919_pilon__uns (5308 bp)
chr contig_591_pilon___frag_2___debris__uns (5001 bp)
chr contig_5923_pilon__uns (6701 bp)
chr contig_5924_pilon__uns (133566 bp)
chr contig_5926_pilon__uns (2546 bp)
chr contig_5928_pilon__uns (3105 bp)
chr contig_592_pilon__uns (52641 bp)
chr contig_5931_pilon___frag_2___debris__uns (2001 bp)
chr contig_5932_pilon__uns (46758 bp)
chr contig_5937_pilon__uns (151053 bp)
chr contig_5940_pilon__uns (252515 bp)
chr contig_5942_pilon__uns (2231 bp)
chr contig_5947_pilon__uns (2356 bp)
chr contig_5948_pilon__uns (918 bp)
chr contig_5958_pilon__uns (1323 bp)
chr contig_5964_pilon__uns (30040 bp)
chr contig_5967_pilon__uns (1125 bp)
chr contig_596_pilon__uns (3064 bp)
chr contig_5971_pilon__uns (275285 bp)
chr contig_5974_pilon__uns (238 bp)
chr contig_5975_pilon__uns (918 bp)
chr contig_5977_pilon__uns (20272 bp)
chr contig_5981_pilon__uns (955 bp)
chr contig_5_pilon__uns (2133 bp)
chr contig_6001_pilon__uns (2641 bp)
chr contig_6003_pilon__uns (2318 bp)
chr contig_6004_pilon__uns (217 bp)
chr contig_600_pilon___frag_2___debris__uns (5001 bp)
chr contig_6024_pilon__uns (5125 bp)
chr contig_6029_pilon__uns (4022 bp)
chr contig_6030_pilon__uns (5323 bp)
chr contig_6031_pilon__uns (9984 bp)
chr contig_6034_pilon__uns (432 bp)
chr contig_6036_pilon__uns (2295 bp)
chr contig_6038_pilon__uns (2729 bp)
chr contig_6040_pilon__uns (68854 bp)
chr contig_6042_pilon__uns (4312 bp)
chr contig_6047_pilon__uns (6631 bp)
chr contig_6048_pilon__uns (578 bp)
chr contig_6049_pilon__uns (1470 bp)
chr contig_6051_pilon__uns (1609 bp)
chr contig_6053_pilon__uns (14756 bp)
chr contig_6054_pilon__uns (1533 bp)
chr contig_6055_pilon__uns (7254 bp)
chr contig_6059_pilon__uns (1219 bp)
chr contig_6062_pilon__uns (2775 bp)
chr contig_6063_pilon__uns (43583 bp)
chr contig_6064_pilon__uns (40366 bp)
chr contig_6068_pilon__uns (517 bp)
chr contig_6069_pilon__uns (470 bp)
chr contig_6071_pilon__uns (2257 bp)
chr contig_6074_pilon__uns (1786 bp)
chr contig_6075_pilon__uns (3817 bp)
chr contig_6076_pilon__uns (14788 bp)
chr contig_6078_pilon__uns (913 bp)
chr contig_6079_pilon__uns (1205 bp)
chr contig_607_pilon___frag_1__uns (155950 bp)
chr contig_607_pilon___frag_2___debris__uns (5001 bp)
chr contig_6085_pilon__uns (1158 bp)
chr contig_6087_pilon__uns (17170 bp)
chr contig_6088_pilon__uns (1000 bp)
chr contig_6092_pilon__uns (40104 bp)
chr contig_6095_pilon__uns (1809 bp)
chr contig_6096_pilon__uns (5305 bp)
chr contig_6099_pilon__uns (1388 bp)
chr contig_6101_pilon__uns (7217 bp)
chr contig_6108_pilon__uns (1057 bp)
chr contig_6109_pilon__uns (706 bp)
chr contig_6110_pilon__uns (643 bp)
chr contig_6115_pilon__uns (1952 bp)
chr contig_6117_pilon__uns (517 bp)
chr contig_6119_pilon__uns (498 bp)
chr contig_611_pilon__uns (134846 bp)
chr contig_6121_pilon__uns (61081 bp)
chr contig_6128_pilon__uns (4289 bp)
chr contig_6131_pilon__uns (4347 bp)
chr contig_6135_pilon__uns (4955 bp)
chr contig_6136_pilon__uns (110244 bp)
chr contig_6137_pilon__uns (5640 bp)
chr contig_6139_pilon__uns (4078 bp)
chr contig_613_pilon__uns (648 bp)
chr contig_6143_pilon__uns (8803 bp)
chr contig_6146_pilon__uns (7251 bp)
chr contig_6147_pilon__uns (1185 bp)
chr contig_614_pilon__uns (2722 bp)
chr contig_6151_pilon__uns (33636 bp)
chr contig_6154_pilon__uns (15186 bp)
chr contig_6156_pilon__uns (549 bp)
chr contig_6157_pilon__uns (8382 bp)
chr contig_6162_pilon__uns (1437 bp)
chr contig_6163_pilon__uns (28520 bp)
chr contig_6164_pilon__uns (5212 bp)
chr contig_6165_pilon__uns (463 bp)
chr contig_6167_pilon__uns (2000 bp)
chr contig_6168_pilon__uns (2966 bp)
chr contig_6175_pilon__uns (70660 bp)
chr contig_618_pilon__uns (4725 bp)
chr contig_6190_pilon__uns (991 bp)
chr contig_6194_pilon__uns (707 bp)
chr contig_6195_pilon__uns (2517 bp)
chr contig_6197_pilon__uns (2789 bp)
chr contig_61_pilon__uns (46704 bp)
chr contig_6202_pilon__uns (580 bp)
chr contig_6206_pilon__uns (4531 bp)
chr contig_620_pilon___frag_2___debris__uns (5001 bp)
chr contig_6210_pilon__uns (2238 bp)
chr contig_6212_pilon__uns (2198 bp)
chr contig_6219_pilon__uns (4189 bp)
chr contig_6224_pilon__uns (7617 bp)
chr contig_6232_pilon__uns (312 bp)
chr contig_623_pilon__uns (14271 bp)
chr contig_6240_pilon__uns (1795 bp)
chr contig_6242_pilon__uns (1715 bp)
chr contig_6251_pilon__uns (566 bp)
chr contig_6255_pilon__uns (2237 bp)
chr contig_6256_pilon__uns (1152 bp)
chr contig_6257_pilon__uns (224 bp)
chr contig_6258_pilon__uns (49002 bp)
chr contig_6259_pilon__uns (489 bp)
chr contig_6260_pilon__uns (2452 bp)
chr contig_6267_pilon__uns (91820 bp)
chr contig_6269_pilon__uns (26328 bp)
chr contig_626_pilon__uns (27333 bp)
chr contig_6270_pilon__uns (1890 bp)
chr contig_6272_pilon__uns (1326 bp)
chr contig_6273_pilon__uns (1483 bp)
chr contig_627_pilon__uns (3452 bp)
chr contig_6282_pilon__uns (1896 bp)
chr contig_6284_pilon__uns (14920 bp)
chr contig_6289_pilon__uns (3010 bp)
chr contig_6291_pilon__uns (1488 bp)
chr contig_6293_pilon__uns (2602 bp)
chr contig_6297_pilon__uns (68764 bp)
chr contig_6298_pilon__uns (1593 bp)
chr contig_62_pilon__uns (54625 bp)
chr contig_6303_pilon__uns (4039 bp)
chr contig_6313_pilon__uns (49212 bp)
chr contig_6314_pilon__uns (68895 bp)
chr contig_6322_pilon__uns (634 bp)
chr contig_6323_pilon__uns (7866 bp)
chr contig_6327_pilon__uns (530 bp)
chr contig_6334_pilon__uns (41473 bp)
chr contig_6336_pilon__uns (1775 bp)
chr contig_6338_pilon__uns (1486 bp)
chr contig_633_pilon__uns (330664 bp)
chr contig_6340_pilon__uns (15845 bp)
chr contig_6347_pilon__uns (19473 bp)
chr contig_6353_pilon__uns (552 bp)
chr contig_6356_pilon__uns (487 bp)
chr contig_6362_pilon__uns (1313 bp)
chr contig_6363_pilon__uns (161540 bp)
chr contig_6364_pilon__uns (11937 bp)
chr contig_6365_pilon__uns (39400 bp)
chr contig_6368_pilon__uns (3279 bp)
chr contig_6369_pilon__uns (1930 bp)
chr contig_6371_pilon__uns (955 bp)
chr contig_6375_pilon__uns (1356 bp)
chr contig_6377_pilon__uns (780 bp)
chr contig_6385_pilon__uns (1387 bp)
chr contig_6388_pilon__uns (598 bp)
chr contig_6393_pilon__uns (1959 bp)
chr contig_6402_pilon__uns (1570 bp)
chr contig_6404_pilon__uns (31797 bp)
chr contig_6405_pilon__uns (3046 bp)
chr contig_6407_pilon__uns (44017 bp)
chr contig_6408_pilon__uns (40485 bp)
chr contig_6410_pilon__uns (773 bp)
chr contig_6411_pilon__uns (3284 bp)
chr contig_6413_pilon__uns (4992 bp)
chr contig_6420_pilon__uns (1093 bp)
chr contig_6425_pilon__uns (7313 bp)
chr contig_6427_pilon__uns (17357 bp)
chr contig_642_pilon__uns (96367 bp)
chr contig_6430_pilon__uns (82598 bp)
chr contig_6432_pilon__uns (1137 bp)
chr contig_6434_pilon__uns (3863 bp)
chr contig_6436_pilon__uns (2214 bp)
chr contig_643_pilon__uns (42254 bp)
chr contig_6440_pilon__uns (527 bp)
chr contig_6444_pilon__uns (25884 bp)
chr contig_6445_pilon__uns (19577 bp)
chr contig_6447_pilon__uns (609 bp)
chr contig_6449_pilon__uns (1007 bp)
chr contig_644_pilon__uns (45218 bp)
chr contig_6451_pilon__uns (4813 bp)
chr contig_6452_pilon__uns (4692 bp)
chr contig_6459_pilon__uns (1776 bp)
chr contig_6461_pilon__uns (4682 bp)
chr contig_6462_pilon__uns (8184 bp)
chr contig_6469_pilon__uns (1299 bp)
chr contig_6470_pilon__uns (1132 bp)
chr contig_6471_pilon__uns (891 bp)
chr contig_6477_pilon__uns (1681 bp)
chr contig_6479_pilon__uns (4937 bp)
chr contig_6480_pilon__uns (916 bp)
chr contig_6494_pilon__uns (1145 bp)
chr contig_6496_pilon__uns (1937 bp)
chr contig_6498_pilon__uns (3267 bp)
chr contig_64_pilon___frag_2___debris__uns (5001 bp)
chr contig_64_pilon___frag_3__uns (48597 bp)
chr contig_6501_pilon__uns (1635 bp)
chr contig_6503_pilon__uns (2410 bp)
chr contig_6505_pilon__uns (1373 bp)
chr contig_6514_pilon__uns (1593 bp)
chr contig_6515_pilon__uns (1146 bp)
chr contig_6518_pilon__uns (39163 bp)
chr contig_6529_pilon__uns (8513 bp)
chr contig_652_pilon__uns (22131 bp)
chr contig_6536_pilon__uns (21283 bp)
chr contig_6537_pilon__uns (513 bp)
chr contig_6540_pilon__uns (2209 bp)
chr contig_6541_pilon__uns (100062 bp)
chr contig_6544_pilon__uns (1126 bp)
chr contig_6547_pilon__uns (685 bp)
chr contig_6549_pilon__uns (2118 bp)
chr contig_6551_pilon__uns (134887 bp)
chr contig_655_pilon__uns (779 bp)
chr contig_6562_pilon__uns (139326 bp)
chr contig_6565_pilon__uns (881 bp)
chr contig_6568_pilon__uns (5316 bp)
chr contig_656_pilon__uns (30227 bp)
chr contig_6576_pilon__uns (10231 bp)
chr contig_6577_pilon__uns (2098 bp)
chr contig_6579_pilon__uns (379 bp)
chr contig_6581_pilon__uns (50426 bp)
chr contig_6588_pilon__uns (9989 bp)
chr contig_6590_pilon__uns (5187 bp)
chr contig_6592_pilon__uns (581 bp)
chr contig_6597_pilon__uns (12122 bp)
chr contig_6606_pilon__uns (673 bp)
chr contig_6609_pilon__uns (1124 bp)
chr contig_6615_pilon__uns (57129 bp)
chr contig_6617_pilon__uns (1562 bp)
chr contig_6619_pilon__uns (64971 bp)
chr contig_661_pilon__uns (67949 bp)
chr contig_6622_pilon__uns (35946 bp)
chr contig_6629_pilon__uns (2137 bp)
chr contig_6630_pilon__uns (4442 bp)
chr contig_6637_pilon__uns (66106 bp)
chr contig_6638_pilon__uns (992 bp)
chr contig_6647_pilon__uns (4176 bp)
chr contig_6652_pilon__uns (61069 bp)
chr contig_6657_pilon__uns (506 bp)
chr contig_6660_pilon__uns (457 bp)
chr contig_6661_pilon__uns (990 bp)
chr contig_6664_pilon__uns (2033 bp)
chr contig_6665_pilon__uns (35338 bp)
chr contig_6667_pilon__uns (207078 bp)
chr contig_6670_pilon__uns (49329 bp)
chr contig_6671_pilon__uns (1810 bp)
chr contig_6672_pilon__uns (3166 bp)
chr contig_6673_pilon__uns (2456 bp)
chr contig_6675_pilon__uns (1003 bp)
chr contig_6677_pilon__uns (1920 bp)
chr contig_6680_pilon__uns (16586 bp)
chr contig_6683_pilon__uns (3838 bp)
chr contig_6687_pilon__uns (8573 bp)
chr contig_668_pilon__uns (9405 bp)
chr contig_6697_pilon__uns (5701 bp)
chr contig_6698_pilon__uns (79361 bp)
chr contig_669_pilon___frag_2___debris__uns (3001 bp)
chr contig_6701_pilon__uns (1031 bp)
chr contig_6704_pilon__uns (643 bp)
chr contig_6709_pilon__uns (2446 bp)
chr contig_670_pilon__uns (14837 bp)
chr contig_6715_pilon__uns (5354 bp)
chr contig_6719_pilon__uns (1892 bp)
chr contig_6721_pilon__uns (14594 bp)
chr contig_6725_pilon__uns (840 bp)
chr contig_6733_pilon__uns (1628 bp)
chr contig_6735_pilon__uns (733 bp)
chr contig_6739_pilon__uns (502 bp)
chr contig_6750_pilon__uns (311232 bp)
chr contig_6753_pilon__uns (308 bp)
chr contig_675_pilon__uns (88740 bp)
chr contig_6760_pilon__uns (1218 bp)
chr contig_6761_pilon__uns (30162 bp)
chr contig_6764_pilon__uns (146866 bp)
chr contig_6768_pilon__uns (675 bp)
chr contig_6770_pilon__uns (9965 bp)
chr contig_6772_pilon__uns (645 bp)
chr contig_6779_pilon__uns (49655 bp)
chr contig_6780_pilon__uns (887 bp)
chr contig_6787_pilon__uns (3896 bp)
chr contig_6793_pilon__uns (1312 bp)
chr contig_6796_pilon__uns (3627 bp)
chr contig_6799_pilon__uns (1656 bp)
chr contig_679_pilon___frag_1__uns (151716 bp)
chr contig_679_pilon___frag_2___debris__uns (5001 bp)
chr contig_679_pilon___frag_3__uns (110217 bp)
chr contig_6802_pilon__uns (29257 bp)
chr contig_6807_pilon__uns (142355 bp)
chr contig_680_pilon__uns (7332 bp)
chr contig_6811_pilon__uns (5851 bp)
chr contig_6813_pilon__uns (4770 bp)
chr contig_6822_pilon__uns (93278 bp)
chr contig_6823_pilon__uns (2573 bp)
chr contig_6824_pilon__uns (14485 bp)
chr contig_6826_pilon__uns (535 bp)
chr contig_6829_pilon__uns (414 bp)
chr contig_6833_pilon__uns (1296 bp)
chr contig_6836_pilon__uns (2955 bp)
chr contig_6841_pilon__uns (627 bp)
chr contig_6843_pilon__uns (556 bp)
chr contig_6844_pilon__uns (932 bp)
chr contig_6845_pilon__uns (3503 bp)
chr contig_684_pilon__uns (2634 bp)
chr contig_6855_pilon__uns (888 bp)
chr contig_6858_pilon__uns (2639 bp)
chr contig_6859_pilon__uns (1190 bp)
chr contig_6860_pilon__uns (37910 bp)
chr contig_6861_pilon__uns (5823 bp)
chr contig_6865_pilon__uns (11078 bp)
chr contig_6866_pilon__uns (3743 bp)
chr contig_6869_pilon__uns (9568 bp)
chr contig_686_pilon__uns (75108 bp)
chr contig_6870_pilon__uns (1731 bp)
chr contig_6872_pilon__uns (1805 bp)
chr contig_6875_pilon__uns (845 bp)
chr contig_6876_pilon__uns (101206 bp)
chr contig_6885_pilon__uns (525 bp)
chr contig_6886_pilon__uns (10454 bp)
chr contig_6891_pilon__uns (22078 bp)
chr contig_6892_pilon__uns (518 bp)
chr contig_6897_pilon__uns (7860 bp)
chr contig_6898_pilon__uns (9711 bp)
chr contig_6899_pilon__uns (1256 bp)
chr contig_689_pilon__uns (8842 bp)
chr contig_6901_pilon__uns (88361 bp)
chr contig_6905_pilon__uns (11970 bp)
chr contig_6906_pilon__uns (32253 bp)
chr contig_6913_pilon__uns (112180 bp)
chr contig_6915_pilon__uns (15319 bp)
chr contig_6916_pilon__uns (35649 bp)
chr contig_6918_pilon__uns (55057 bp)
chr contig_6919_pilon__uns (864 bp)
chr contig_6921_pilon__uns (625 bp)
chr contig_6922_pilon__uns (5073 bp)
chr contig_692_pilon__uns (268446 bp)
chr contig_6932_pilon__uns (190962 bp)
chr contig_6939_pilon__uns (7350 bp)
chr contig_6949_pilon__uns (2797 bp)
chr contig_6950_pilon__uns (545 bp)
chr contig_6958_pilon__uns (1685 bp)
chr contig_6959_pilon__uns (801 bp)
chr contig_6966_pilon__uns (842 bp)
chr contig_6967_pilon__uns (593 bp)
chr contig_6970_pilon__uns (1649 bp)
chr contig_6974_pilon__uns (4203 bp)
chr contig_6976_pilon__uns (1731 bp)
chr contig_6979_pilon__uns (10186 bp)
chr contig_6982_pilon__uns (6141 bp)
chr contig_6983_pilon__uns (2269 bp)
chr contig_6987_pilon__uns (72055 bp)
chr contig_6998_pilon__uns (825 bp)
chr contig_7001_pilon__uns (4244 bp)
chr contig_7003_pilon__uns (3324 bp)
chr contig_7004_pilon___frag_2___debris__uns (2001 bp)
chr contig_7006_pilon__uns (67105 bp)
chr contig_7008_pilon__uns (2246 bp)
chr contig_7011_pilon__uns (1388 bp)
chr contig_7013_pilon__uns (98894 bp)
chr contig_701_pilon__uns (1436 bp)
chr contig_7021_pilon__uns (2573 bp)
chr contig_7023_pilon__uns (559 bp)
chr contig_7027_pilon__uns (10932 bp)
chr contig_7028_pilon__uns (1526 bp)
chr contig_7029_pilon__uns (351 bp)
chr contig_702_pilon__uns (3929 bp)
chr contig_7031_pilon__uns (21065 bp)
chr contig_7032_pilon__uns (528 bp)
chr contig_7035_pilon__uns (2130 bp)
chr contig_7044_pilon__uns (211 bp)
chr contig_7052_pilon__uns (572 bp)
chr contig_7058_pilon__uns (1961 bp)
chr contig_7064_pilon__uns (43589 bp)
chr contig_7067_pilon__uns (669 bp)
chr contig_7070_pilon__uns (39062 bp)
chr contig_7074_pilon__uns (39774 bp)
chr contig_7075_pilon__uns (1069 bp)
chr contig_7076_pilon__uns (34581 bp)
chr contig_7085_pilon__uns (133480 bp)
chr contig_708_pilon__uns (1032 bp)
chr contig_7090_pilon__uns (150333 bp)
chr contig_7091_pilon__uns (3159 bp)
chr contig_7094_pilon__uns (8783 bp)
chr contig_709_pilon__uns (860 bp)
chr contig_7105_pilon__uns (1931 bp)
chr contig_7107_pilon__uns (1661 bp)
chr contig_710_pilon__uns (8447 bp)
chr contig_7110_pilon__uns (24618 bp)
chr contig_7111_pilon__uns (55941 bp)
chr contig_7112_pilon__uns (642 bp)
chr contig_711_pilon__uns (8034 bp)
chr contig_7120_pilon__uns (13544 bp)
chr contig_7127_pilon__uns (79229 bp)
chr contig_7132_pilon__uns (42623 bp)
chr contig_7133_pilon__uns (51766 bp)
chr contig_7134_pilon__uns (497 bp)
chr contig_7142_pilon__uns (129148 bp)
chr contig_7144_pilon__uns (83109 bp)
chr contig_7146_pilon__uns (33994 bp)
chr contig_7151_pilon__uns (1101 bp)
chr contig_7153_pilon__uns (518 bp)
chr contig_715_pilon__uns (33524 bp)
chr contig_7162_pilon__uns (1307 bp)
chr contig_7165_pilon__uns (1193 bp)
chr contig_7169_pilon__uns (659 bp)
chr contig_716_pilon__uns (11870 bp)
chr contig_7173_pilon__uns (3762 bp)
chr contig_7174_pilon__uns (90829 bp)
chr contig_7179_pilon__uns (21004 bp)
chr contig_7180_pilon__uns (9905 bp)
chr contig_7181_pilon__uns (4076 bp)
chr contig_7184_pilon__uns (71012 bp)
chr contig_718_pilon__uns (35501 bp)
chr contig_7195_pilon__uns (1453 bp)
chr contig_7201_pilon__uns (9938 bp)
chr contig_7202_pilon__uns (28252 bp)
chr contig_7208_pilon__uns (4650 bp)
chr contig_720_pilon__uns (1469 bp)
chr contig_7210_pilon__uns (2225 bp)
chr contig_7213_pilon__uns (59106 bp)
chr contig_7215_pilon__uns (1818 bp)
chr contig_7219_pilon__uns (674 bp)
chr contig_7221_pilon__uns (7837 bp)
chr contig_7224_pilon__uns (5722 bp)
chr contig_7230_pilon__uns (5489 bp)
chr contig_7235_pilon__uns (116013 bp)
chr contig_7236_pilon__uns (1163 bp)
chr contig_7237_pilon__uns (23244 bp)
chr contig_7239_pilon__uns (1658 bp)
chr contig_7248_pilon__uns (19403 bp)
chr contig_7250_pilon__uns (683 bp)
chr contig_7255_pilon__uns (28882 bp)
chr contig_7269_pilon__uns (11930 bp)
chr contig_726_pilon__uns (43230 bp)
chr contig_7272_pilon__uns (72635 bp)
chr contig_7276_pilon__uns (12871 bp)
chr contig_7278_pilon__uns (2360 bp)
chr contig_7281_pilon__uns (1801 bp)
chr contig_7286_pilon__uns (3087 bp)
chr contig_7293_pilon__uns (34230 bp)
chr contig_7294_pilon__uns (23735 bp)
chr contig_7298_pilon__uns (1068 bp)
chr contig_7299_pilon__uns (691 bp)
chr contig_7303_pilon__uns (4377 bp)
chr contig_7307_pilon__uns (522 bp)
chr contig_7309_pilon__uns (3094 bp)
chr contig_7314_pilon__uns (8499 bp)
chr contig_7316_pilon__uns (19404 bp)
chr contig_731_pilon__uns (63761 bp)
chr contig_7321_pilon__uns (174759 bp)
chr contig_7322_pilon__uns (1056 bp)
chr contig_7329_pilon__uns (1997 bp)
chr contig_732_pilon__uns (127135 bp)
chr contig_7330_pilon__uns (6401 bp)
chr contig_7339_pilon__uns (47300 bp)
chr contig_733_pilon__uns (511 bp)
chr contig_7342_pilon__uns (1217 bp)
chr contig_7343_pilon__uns (6421 bp)
chr contig_7344_pilon__uns (1567 bp)
chr contig_7345_pilon__uns (1030 bp)
chr contig_7347_pilon__uns (7899 bp)
chr contig_7350_pilon__uns (27420 bp)
chr contig_7353_pilon__uns (127147 bp)
chr contig_7354_pilon__uns (1747 bp)
chr contig_7357_pilon__uns (497 bp)
chr contig_7359_pilon__uns (1172 bp)
chr contig_735_pilon__uns (36842 bp)
chr contig_7361_pilon__uns (885 bp)
chr contig_7365_pilon__uns (954 bp)
chr contig_7366_pilon__uns (1806 bp)
chr contig_7371_pilon__uns (13364 bp)
chr contig_7373_pilon__uns (56235 bp)
chr contig_7374_pilon__uns (32978 bp)
chr contig_7378_pilon__uns (139583 bp)
chr contig_7381_pilon__uns (1044 bp)
chr contig_7384_pilon__uns (27289 bp)
chr contig_7393_pilon__uns (15605 bp)
chr contig_7397_pilon__uns (19654 bp)
chr contig_7401_pilon__uns (1011 bp)
chr contig_7408_pilon__uns (13334 bp)
chr contig_7410_pilon__uns (12072 bp)
chr contig_7412_pilon__uns (62924 bp)
chr contig_7417_pilon__uns (2614 bp)
chr contig_7418_pilon__uns (51913 bp)
chr contig_7426_pilon__uns (9753 bp)
chr contig_7428_pilon__uns (87860 bp)
chr contig_7429_pilon__uns (1384 bp)
chr contig_7430_pilon__uns (1593 bp)
chr contig_7433_pilon__uns (19142 bp)
chr contig_7434_pilon__uns (2091 bp)
chr contig_7437_pilon__uns (14948 bp)
chr contig_7439_pilon__uns (37830 bp)
chr contig_743_pilon__uns (6987 bp)
chr contig_7442_pilon__uns (6265 bp)
chr contig_7443_pilon__uns (2318 bp)
chr contig_7445_pilon__uns (37229 bp)
chr contig_7446_pilon__uns (49728 bp)
chr contig_7448_pilon__uns (54959 bp)
chr contig_7449_pilon__uns (542 bp)
chr contig_744_pilon__uns (2902 bp)
chr contig_7450_pilon__uns (363 bp)
chr contig_7453_pilon__uns (593 bp)
chr contig_7456_pilon__uns (17444 bp)
chr contig_7459_pilon__uns (1403 bp)
chr contig_7464_pilon__uns (165025 bp)
chr contig_7467_pilon__uns (50487 bp)
chr contig_7474_pilon__uns (996 bp)
chr contig_7476_pilon__uns (1265 bp)
chr contig_7477_pilon__uns (83534 bp)
chr contig_7481_pilon__uns (838 bp)
chr contig_7484_pilon__uns (15698 bp)
chr contig_7487_pilon__uns (1846 bp)
chr contig_7500_pilon__uns (53714 bp)
chr contig_7507_pilon__uns (37832 bp)
chr contig_7509_pilon__uns (1188 bp)
chr contig_750_pilon__uns (69689 bp)
chr contig_7511_pilon__uns (762 bp)
chr contig_7513_pilon__uns (5365 bp)
chr contig_7521_pilon__uns (11134 bp)
chr contig_7525_pilon__uns (2066 bp)
chr contig_7527_pilon__uns (551 bp)
chr contig_7528_pilon__uns (559 bp)
chr contig_7531_pilon__uns (560 bp)
chr contig_7533_pilon__uns (2182 bp)
chr contig_7538_pilon__uns (1593 bp)
chr contig_753_pilon__uns (3897 bp)
chr contig_7540_pilon__uns (811 bp)
chr contig_7545_pilon__uns (2483 bp)
chr contig_7556_pilon__uns (53102 bp)
chr contig_7560_pilon__uns (40512 bp)
chr contig_7562_pilon__uns (215 bp)
chr contig_7563_pilon__uns (713 bp)
chr contig_7565_pilon__uns (90528 bp)
chr contig_7569_pilon__uns (8511 bp)
chr contig_756_pilon__uns (48839 bp)
chr contig_7571_pilon__uns (551 bp)
chr contig_7572_pilon__uns (47023 bp)
chr contig_7574_pilon__uns (246 bp)
chr contig_7575_pilon__uns (3383 bp)
chr contig_7576_pilon__uns (3831 bp)
chr contig_7577_pilon__uns (8146 bp)
chr contig_7579_pilon__uns (43397 bp)
chr contig_757_pilon__uns (166044 bp)
chr contig_7582_pilon__uns (11267 bp)
chr contig_7584_pilon__uns (4632 bp)
chr contig_7586_pilon__uns (3000 bp)
chr contig_7587_pilon__uns (2835 bp)
chr contig_7589_pilon__uns (1058 bp)
chr contig_758_pilon__uns (25581 bp)
chr contig_7590_pilon__uns (2794 bp)
chr contig_7591_pilon__uns (3485 bp)
chr contig_7594_pilon__uns (882 bp)
chr contig_7606_pilon__uns (1519 bp)
chr contig_7607_pilon__uns (49100 bp)
chr contig_7609_pilon__uns (27912 bp)
chr contig_7610_pilon__uns (701 bp)
chr contig_7611_pilon__uns (5128 bp)
chr contig_7616_pilon__uns (78600 bp)
chr contig_7619_pilon__uns (2434 bp)
chr contig_7620_pilon__uns (1769 bp)
chr contig_7621_pilon__uns (5746 bp)
chr contig_7629_pilon__uns (47076 bp)
chr contig_762_pilon__uns (70088 bp)
chr contig_7632_pilon__uns (3794 bp)
chr contig_7633_pilon__uns (50352 bp)
chr contig_7643_pilon__uns (12243 bp)
chr contig_7645_pilon__uns (15435 bp)
chr contig_7649_pilon__uns (4596 bp)
chr contig_7655_pilon__uns (47185 bp)
chr contig_765_pilon__uns (12179 bp)
chr contig_7662_pilon__uns (7930 bp)
chr contig_7665_pilon__uns (9751 bp)
chr contig_7668_pilon__uns (8835 bp)
chr contig_7670_pilon__uns (20847 bp)
chr contig_7672_pilon__uns (5043 bp)
chr contig_7677_pilon__uns (1831 bp)
chr contig_7683_pilon__uns (2970 bp)
chr contig_7686_pilon__uns (34122 bp)
chr contig_7687_pilon__uns (25885 bp)
chr contig_7691_pilon__uns (7125 bp)
chr contig_7696_pilon__uns (3139 bp)
chr contig_7699_pilon__uns (1056 bp)
chr contig_7701_pilon__uns (1132 bp)
chr contig_7703_pilon__uns (78557 bp)
chr contig_7708_pilon__uns (55250 bp)
chr contig_7712_pilon__uns (2024 bp)
chr contig_7713_pilon__uns (11400 bp)
chr contig_7714_pilon__uns (1057 bp)
chr contig_7732_pilon__uns (1850 bp)
chr contig_7734_pilon__uns (179759 bp)
chr contig_7735_pilon__uns (689 bp)
chr contig_7737_pilon__uns (30690 bp)
chr contig_7741_pilon__uns (25085 bp)
chr contig_7742_pilon__uns (11908 bp)
chr contig_7743_pilon__uns (19573 bp)
chr contig_7754_pilon__uns (8433 bp)
chr contig_7755_pilon__uns (42949 bp)
chr contig_7756_pilon__uns (824 bp)
chr contig_7762_pilon__uns (44173 bp)
chr contig_7765_pilon__uns (23510 bp)
chr contig_7767_pilon__uns (24094 bp)
chr contig_7771_pilon__uns (534 bp)
chr contig_7773_pilon__uns (21793 bp)
chr contig_7774_pilon__uns (12511 bp)
chr contig_777_pilon__uns (804 bp)
chr contig_7780_pilon__uns (642 bp)
chr contig_7783_pilon__uns (9954 bp)
chr contig_7784_pilon__uns (2616 bp)
chr contig_7785_pilon__uns (170967 bp)
chr contig_7792_pilon__uns (13021 bp)
chr contig_7795_pilon__uns (2068 bp)
chr contig_7801_pilon__uns (617 bp)
chr contig_7805_pilon__uns (815 bp)
chr contig_7814_pilon__uns (47131 bp)
chr contig_7816_pilon__uns (19530 bp)
chr contig_7818_pilon__uns (2430 bp)
chr contig_7819_pilon__uns (14077 bp)
chr contig_781_pilon__uns (9344 bp)
chr contig_7822_pilon__uns (27276 bp)
chr contig_7828_pilon__uns (711 bp)
chr contig_7829_pilon__uns (291328 bp)
chr contig_782_pilon__uns (760 bp)
chr contig_7830_pilon__uns (108953 bp)
chr contig_7836_pilon__uns (795 bp)
chr contig_783_pilon__uns (234756 bp)
chr contig_7840_pilon__uns (10329 bp)
chr contig_7845_pilon__uns (5649 bp)
chr contig_7846_pilon__uns (13810 bp)
chr contig_7848_pilon__uns (476 bp)
chr contig_7849_pilon__uns (5637 bp)
chr contig_7863_pilon__uns (5935 bp)
chr contig_7866_pilon__uns (23609 bp)
chr contig_7867_pilon__uns (89727 bp)
chr contig_786_pilon__uns (2533 bp)
chr contig_7871_pilon__uns (639 bp)
chr contig_7872_pilon__uns (12065 bp)
chr contig_7873_pilon__uns (1082 bp)
chr contig_7875_pilon__uns (3310 bp)
chr contig_7879_pilon__uns (2029 bp)
chr contig_787_pilon___frag_1__uns (9589 bp)
chr contig_787_pilon___frag_2___debris__uns (3001 bp)
chr contig_787_pilon___frag_3__uns (24001 bp)
chr contig_787_pilon___frag_4___debris__uns (2001 bp)
chr contig_787_pilon___frag_5__uns (50139 bp)
chr contig_7880_pilon__uns (30844 bp)
chr contig_7881_pilon__uns (2153 bp)
chr contig_7884_pilon__uns (1304 bp)
chr contig_7886_pilon__uns (4435 bp)
chr contig_7890_pilon__uns (8905 bp)
chr contig_7892_pilon__uns (45436 bp)
chr contig_7893_pilon__uns (771 bp)
chr contig_7894_pilon__uns (82881 bp)
chr contig_7899_pilon__uns (532 bp)
chr contig_7900_pilon__uns (5786 bp)
chr contig_7906_pilon__uns (2768 bp)
chr contig_7908_pilon__uns (16993 bp)
chr contig_7917_pilon__uns (519 bp)
chr contig_791_pilon__uns (1953 bp)
chr contig_7928_pilon__uns (24411 bp)
chr contig_7931_pilon__uns (7750 bp)
chr contig_7932_pilon__uns (616 bp)
chr contig_7935_pilon__uns (6098 bp)
chr contig_7938_pilon__uns (626 bp)
chr contig_7939_pilon__uns (8080 bp)
chr contig_793_pilon__uns (2570 bp)
chr contig_7940_pilon__uns (782 bp)
chr contig_7947_pilon__uns (69876 bp)
chr contig_7949_pilon__uns (628 bp)
chr contig_7952_pilon__uns (9227 bp)
chr contig_7955_pilon__uns (1965 bp)
chr contig_7957_pilon__uns (3043 bp)
chr contig_7958_pilon__uns (804 bp)
chr contig_795_pilon__uns (3242 bp)
chr contig_7963_pilon__uns (2773 bp)
chr contig_7968_pilon__uns (9134 bp)
chr contig_7969_pilon__uns (11230 bp)
chr contig_7976_pilon__uns (1975 bp)
chr contig_7977_pilon__uns (600 bp)
chr contig_7980_pilon__uns (1980 bp)
chr contig_7981_pilon__uns (31818 bp)
chr contig_7983_pilon__uns (13290 bp)
chr contig_7984_pilon__uns (150825 bp)
chr contig_798_pilon__uns (227830 bp)
chr contig_7997_pilon__uns (684 bp)
chr contig_7999_pilon__uns (38532 bp)
chr contig_79_pilon__uns (43352 bp)
chr contig_8001_pilon__uns (958 bp)
chr contig_8002_pilon__uns (4582 bp)
chr contig_8011_pilon__uns (597 bp)
chr contig_8012_pilon__uns (3814 bp)
chr contig_8013_pilon__uns (1215 bp)
chr contig_8018_pilon__uns (670 bp)
chr contig_8020_pilon__uns (7663 bp)
chr contig_8021_pilon__uns (4816 bp)
chr contig_8024_pilon__uns (493 bp)
chr contig_8025_pilon__uns (53780 bp)
chr contig_8027_pilon__uns (102026 bp)
chr contig_8028_pilon__uns (4828 bp)
chr contig_8033_pilon__uns (5247 bp)
chr contig_8034_pilon__uns (2533 bp)
chr contig_8036_pilon__uns (1096 bp)
chr contig_803_pilon__uns (216696 bp)
chr contig_8041_pilon__uns (5403 bp)
chr contig_8055_pilon__uns (759 bp)
chr contig_8057_pilon__uns (1100 bp)
chr contig_8059_pilon__uns (738 bp)
chr contig_8065_pilon__uns (2436 bp)
chr contig_8070_pilon__uns (65374 bp)
chr contig_8071_pilon__uns (1411 bp)
chr contig_8076_pilon__uns (16461 bp)
chr contig_8089_pilon__uns (5108 bp)
chr contig_8090_pilon__uns (704 bp)
chr contig_8093_pilon__uns (46219 bp)
chr contig_8096_pilon__uns (12502 bp)
chr contig_80_pilon__uns (91059 bp)
chr contig_8100_pilon__uns (619 bp)
chr contig_8101_pilon__uns (40547 bp)
chr contig_8103_pilon__uns (5346 bp)
chr contig_8105_pilon__uns (136730 bp)
chr contig_8106_pilon__uns (2093 bp)
chr contig_8121_pilon__uns (482 bp)
chr contig_8129_pilon__uns (527 bp)
chr contig_8131_pilon__uns (16087 bp)
chr contig_8140_pilon__uns (1102 bp)
chr contig_8141_pilon__uns (502 bp)
chr contig_8145_pilon__uns (20158 bp)
chr contig_8146_pilon__uns (625 bp)
chr contig_8148_pilon__uns (1802 bp)
chr contig_8150_pilon__uns (498 bp)
chr contig_8153_pilon__uns (3793 bp)
chr contig_8154_pilon__uns (63970 bp)
chr contig_8157_pilon__uns (1153 bp)
chr contig_8158_pilon__uns (4993 bp)
chr contig_8162_pilon__uns (9824 bp)
chr contig_8165_pilon__uns (2346 bp)
chr contig_816_pilon__uns (242892 bp)
chr contig_8170_pilon__uns (1637 bp)
chr contig_8171_pilon__uns (1088 bp)
chr contig_8172_pilon__uns (1241 bp)
chr contig_8180_pilon__uns (900 bp)
chr contig_8182_pilon__uns (1313 bp)
chr contig_8183_pilon__uns (11387 bp)
chr contig_8186_pilon__uns (483 bp)
chr contig_8189_pilon__uns (6075 bp)
chr contig_8192_pilon__uns (1098 bp)
chr contig_8195_pilon__uns (3599 bp)
chr contig_8198_pilon__uns (504 bp)
chr contig_8202_pilon__uns (7205 bp)
chr contig_8204_pilon__uns (1179 bp)
chr contig_8206_pilon__uns (6598 bp)
chr contig_8207_pilon__uns (1150 bp)
chr contig_8212_pilon__uns (9194 bp)
chr contig_8213_pilon__uns (3380 bp)
chr contig_8217_pilon__uns (876 bp)
chr contig_8219_pilon__uns (4178 bp)
chr contig_8222_pilon__uns (424 bp)
chr contig_8223_pilon__uns (968 bp)
chr contig_8224_pilon__uns (55660 bp)
chr contig_8225_pilon__uns (10375 bp)
chr contig_8227_pilon__uns (1045 bp)
chr contig_8228_pilon__uns (5801 bp)
chr contig_8231_pilon__uns (655 bp)
chr contig_8232_pilon__uns (72277 bp)
chr contig_8233_pilon__uns (9436 bp)
chr contig_8242_pilon__uns (17300 bp)
chr contig_8251_pilon__uns (1551 bp)
chr contig_8252_pilon__uns (6619 bp)
chr contig_8253_pilon__uns (1800 bp)
chr contig_8254_pilon___frag_2___debris__uns (1001 bp)
chr contig_8257_pilon__uns (1083 bp)
chr contig_8259_pilon__uns (14377 bp)
chr contig_8260_pilon__uns (1134 bp)
chr contig_8261_pilon__uns (1621 bp)
chr contig_8262_pilon__uns (58374 bp)
chr contig_8268_pilon__uns (723 bp)
chr contig_8269_pilon__uns (1763 bp)
chr contig_8272_pilon__uns (925 bp)
chr contig_8277_pilon__uns (564 bp)
chr contig_8278_pilon__uns (546 bp)
chr contig_8280_pilon__uns (695 bp)
chr contig_8286_pilon__uns (1141 bp)
chr contig_8289_pilon__uns (988 bp)
chr contig_8296_pilon__uns (81906 bp)
chr contig_8298_pilon__uns (1131 bp)
chr contig_8299_pilon__uns (812 bp)
chr contig_8302_pilon__uns (862 bp)
chr contig_8303_pilon__uns (1005 bp)
chr contig_8305_pilon__uns (1068 bp)
chr contig_8306_pilon__uns (7296 bp)
chr contig_830_pilon___frag_1__uns (77371 bp)
chr contig_830_pilon___frag_2___debris__uns (2001 bp)
chr contig_830_pilon___frag_3__uns (70138 bp)
chr contig_8310_pilon___frag_1__uns (59872 bp)
chr contig_8310_pilon___frag_2___debris__uns (5001 bp)
chr contig_8310_pilon___frag_3__uns (44643 bp)
chr contig_8316_pilon__uns (1156 bp)
chr contig_8317_pilon__uns (949 bp)
chr contig_8318_pilon__uns (65318 bp)
chr contig_8321_pilon__uns (5080 bp)
chr contig_8323_pilon__uns (527 bp)
chr contig_8324_pilon__uns (12317 bp)
chr contig_8327_pilon__uns (6911 bp)
chr contig_8328_pilon__uns (3016 bp)
chr contig_8347_pilon__uns (741 bp)
chr contig_834_pilon__uns (1063 bp)
chr contig_8362_pilon__uns (96485 bp)
chr contig_8363_pilon__uns (2548 bp)
chr contig_8375_pilon__uns (1006 bp)
chr contig_8381_pilon__uns (12593 bp)
chr contig_8383_pilon__uns (3398 bp)
chr contig_8388_pilon__uns (13651 bp)
chr contig_8398_pilon__uns (11271 bp)
chr contig_8400_pilon__uns (4188 bp)
chr contig_8405_pilon__uns (79715 bp)
chr contig_8414_pilon__uns (3031 bp)
chr contig_8417_pilon__uns (530 bp)
chr contig_8422_pilon__uns (27518 bp)
chr contig_8434_pilon__uns (78063 bp)
chr contig_8439_pilon__uns (3573 bp)
chr contig_843_pilon__uns (50289 bp)
chr contig_8450_pilon__uns (3727 bp)
chr contig_8456_pilon__uns (2396 bp)
chr contig_8462_pilon__uns (5034 bp)
chr contig_846_pilon__uns (80700 bp)
chr contig_8470_pilon__uns (572 bp)
chr contig_8471_pilon__uns (3020 bp)
chr contig_847_pilon__uns (71338 bp)
chr contig_8489_pilon__uns (13234 bp)
chr contig_848_pilon__uns (70240 bp)
chr contig_8491_pilon__uns (3201 bp)
chr contig_8492_pilon__uns (2630 bp)
chr contig_8503_pilon__uns (42080 bp)
chr contig_8509_pilon__uns (16330 bp)
chr contig_850_pilon__uns (32668 bp)
chr contig_8511_pilon__uns (2081 bp)
chr contig_8514_pilon__uns (1440 bp)
chr contig_851_pilon__uns (36618 bp)
chr contig_8527_pilon__uns (2770 bp)
chr contig_852_pilon___frag_1__uns (82888 bp)
chr contig_852_pilon___frag_2___debris__uns (2001 bp)
chr contig_852_pilon___frag_3__uns (46458 bp)
chr contig_8530_pilon__uns (2196 bp)
chr contig_8536_pilon__uns (2567 bp)
chr contig_8543_pilon__uns (2659 bp)
chr contig_8544_pilon__uns (24320 bp)
chr contig_8546_pilon__uns (20430 bp)
chr contig_8548_pilon__uns (341 bp)
chr contig_8549_pilon__uns (23276 bp)
chr contig_8550_pilon__uns (48458 bp)
chr contig_855_pilon__uns (17464 bp)
chr contig_8560_pilon__uns (96554 bp)
chr contig_8570_pilon__uns (13680 bp)
chr contig_8577_pilon__uns (1350 bp)
chr contig_8595_pilon__uns (10144 bp)
chr contig_8598_pilon__uns (2135 bp)
chr contig_85_pilon__uns (55958 bp)
chr contig_8601_pilon__uns (2625 bp)
chr contig_8606_pilon__uns (937 bp)
chr contig_8609_pilon__uns (2912 bp)
chr contig_860_pilon__uns (5975 bp)
chr contig_8610_pilon__uns (3101 bp)
chr contig_8615_pilon__uns (467 bp)
chr contig_8616_pilon__uns (1722 bp)
chr contig_8617_pilon__uns (73123 bp)
chr contig_8618_pilon__uns (2087 bp)
chr contig_861_pilon__uns (7439 bp)
chr contig_8620_pilon__uns (1020 bp)
chr contig_8621_pilon__uns (63859 bp)
chr contig_8624_pilon__uns (8217 bp)
chr contig_8626_pilon__uns (9308 bp)
chr contig_8628_pilon__uns (4281 bp)
chr contig_8629_pilon__uns (9078 bp)
chr contig_8633_pilon__uns (4480 bp)
chr contig_8634_pilon__uns (3444 bp)
chr contig_8642_pilon__uns (758 bp)
chr contig_8647_pilon__uns (1648 bp)
chr contig_8656_pilon__uns (4419 bp)
chr contig_8658_pilon__uns (2056 bp)
chr contig_865_pilon__uns (3675 bp)
chr contig_8661_pilon__uns (2426 bp)
chr contig_8665_pilon__uns (120408 bp)
chr contig_8669_pilon__uns (856 bp)
chr contig_8670_pilon__uns (3216 bp)
chr contig_8671_pilon__uns (901 bp)
chr contig_8673_pilon__uns (3725 bp)
chr contig_8675_pilon__uns (238 bp)
chr contig_8678_pilon__uns (949 bp)
chr contig_867_pilon__uns (3159 bp)
chr contig_8688_pilon__uns (2641 bp)
chr contig_8689_pilon__uns (12883 bp)
chr contig_868_pilon__uns (4456 bp)
chr contig_8697_pilon__uns (1318 bp)
chr contig_86_pilon__uns (182895 bp)
chr contig_8703_pilon__uns (2835 bp)
chr contig_8712_pilon__uns (2435 bp)
chr contig_8718_pilon__uns (4259 bp)
chr contig_8733_pilon__uns (24751 bp)
chr contig_8737_pilon__uns (1871 bp)
chr contig_873_pilon__uns (33210 bp)
chr contig_8746_pilon__uns (29296 bp)
chr contig_8751_pilon__uns (3031 bp)
chr contig_8754_pilon__uns (5949 bp)
chr contig_8761_pilon__uns (2585 bp)
chr contig_8765_pilon__uns (12506 bp)
chr contig_8769_pilon__uns (924 bp)
chr contig_8774_pilon__uns (892 bp)
chr contig_878_pilon__uns (4009 bp)
chr contig_883_pilon__uns (15642 bp)
chr contig_888_pilon__uns (2987 bp)
chr contig_891_pilon__uns (94943 bp)
chr contig_898_pilon___frag_1__uns (26501 bp)
chr contig_898_pilon___frag_2___debris__uns (5001 bp)
chr contig_899_pilon__uns (46917 bp)
chr contig_902_pilon__uns (740 bp)
chr contig_909_pilon__uns (1612 bp)
chr contig_913_pilon__uns (2294 bp)
chr contig_917_pilon__uns (9339 bp)
chr contig_91_pilon__uns (36317 bp)
chr contig_928_pilon__uns (1431 bp)
chr contig_932_pilon__uns (55711 bp)
chr contig_933_pilon__uns (10616 bp)
chr contig_941_pilon__uns (27219 bp)
chr contig_949_pilon__uns (15576 bp)
chr contig_951_pilon__uns (70592 bp)
chr contig_953_pilon__uns (78497 bp)
chr contig_957_pilon___frag_2___debris__uns (3001 bp)
chr contig_958_pilon__uns (50155 bp)
chr contig_959_pilon__uns (15123 bp)
chr contig_961_pilon___frag_1__uns (61407 bp)
chr contig_961_pilon___frag_2___debris__uns (5001 bp)
chr contig_961_pilon___frag_3__uns (136001 bp)
chr contig_961_pilon___frag_4___debris__uns (5001 bp)
chr contig_961_pilon___frag_5__uns (49432 bp)
chr contig_967_pilon__uns (33718 bp)
chr contig_969_pilon__uns (5031 bp)
chr contig_970_pilon__uns (2987 bp)
chr contig_973_pilon__uns (738 bp)
chr contig_975_pilon__uns (1394 bp)
chr contig_980_pilon___frag_2___debris__uns (5001 bp)
chr contig_988_pilon__uns (1201 bp)
chr contig_989_pilon__uns (2782 bp)
chr contig_991_pilon__uns (38039 bp)
chr contig_992_pilon__uns (30809 bp)
chr scaffold_11_pilon__uns (261324 bp)
chr scaffold_4415_pilon__uns (144318 bp)
chr scaffold_546_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_1__uns (36977 bp)
chr scaffold_5852_pilon___frag_2___debris__uns (2001 bp)
chr scaffold_5852_pilon___frag_3__uns (64971 bp)
chr scaffold_6472_pilon__uns (101702 bp)
chr scaffold_7122_pilon__uns (288074 bp)
chr scaffold_75_pilon__uns (171814 bp)

Single-core mode: setting pid to 1

Paired-end alignments will be performed
=======================================

The provided filenames for paired-end alignments are /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R2_001_val_2.fq.gz
Input files are in FastQ format
Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R1_001_val_1.fq.gz
Writing a C -> T converted version of the input file CH10_11_S20_L001_R1_001_val_1.fq.gz to CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file CH10_11_S20_L001_R1_001_val_1.fq.gz (40001 sequences in total)

Processing reads up to sequence no. 40000 from /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R2_001_val_2.fq.gz
Writing a G -> A converted version of the input file CH10_11_S20_L001_R2_001_val_2.fq.gz to CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Created G -> A converted version of the FastQ file CH10_11_S20_L001_R2_001_val_2.fq.gz (40001 sequences in total)

Input files are CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq (FastQ)
Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ with the specified options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500

Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:3579:1367_1:N:0:NAGTGG/1	99	contig_5123_pilon___frag_1__uns_CT_converted	108824	42	47M	=	108824	-47	AATTTAAATAGTATTTGGATTTGTTTATGGTGGATTGGGTTGAGTGT	JJFJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFF	AS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:47	YS:i:0	YT:Z:CP
K00337:412:HKTCJBBXY:1:1101:3579:1367_2:N:0:NAGTGG/2	147	contig_5123_pilon___frag_1__uns_CT_converted	108824	42	47M	=	108824	-47	AATTTAAATAGTATTTGGATTTGTTTATGGTGGATTGGGTTGAGTGT	7AJJA-AA<--F-7JJJJFFJJAJAF-JJJJJJ7JAJJJJJJFJJJJ	AS:i:0	XN:i:0	XM:i:0	XO:i:0	XG:i:0	NM:i:0	MD:Z:47	YS:i:0	YT:Z:CP
Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 40 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw))
Found first alignment:
K00337:412:HKTCJBBXY:1:1101:3579:1367_1:N:0:NAGTGG/1	77	*	0	0	*	*	0	0	AATTTAAATAGTATTTGGATTTGTTTATGGTGGATTGGGTTGAGTGT	JJFJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFF	YT:Z:UP
K00337:412:HKTCJBBXY:1:1101:3579:1367_2:N:0:NAGTGG/2	141	*	0	0	*	*	0	0	ACACTCAACCCAATCCACCATAAACAAATCCAAATACTATTTAAATT	JJJJFJJJJJJAJ7JJJJJJ-FAJAJJFFJJJJ7-F--<AA-AJJA7	YT:Z:UP

>>> Writing bisulfite mapping results to CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam <<<


Reading in the sequence files /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R2_001_val_2.fq.gz
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27625 (69.06%) aligned concordantly 0 times
    4824 (12.06%) aligned concordantly exactly 1 time
    7551 (18.88%) aligned concordantly >1 times
30.94% overall alignment rate
40000 reads; of these:
  40000 (100.00%) were paired; of these:
    27630 (69.08%) aligned concordantly 0 times
    4918 (12.29%) aligned concordantly exactly 1 time
    7452 (18.63%) aligned concordantly >1 times
30.93% overall alignment rate
Processed 40000 sequences in total


Successfully deleted the temporary files CH10_11_S20_L001_R1_001_val_1.fq.gz_C_to_T.fastq and CH10_11_S20_L001_R2_001_val_2.fq.gz_G_to_A.fastq

Final Alignment report
======================
Sequence pairs analysed in total:	40000
Number of paired-end alignments with a unique best hit:	11697
Mapping efficiency:	29.2%

Sequence pairs with no alignments under any condition:	22940
Sequence pairs did not map uniquely:	5363
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	5808	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	5889	((converted) bottom strand)

Number of alignments to (merely theoretical) complementary strands being rejected in total:	0

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	354504

Total methylated C's in CpG context:	34313
Total methylated C's in CHG context:	2018
Total methylated C's in CHH context:	37642
Total methylated C's in Unknown context:	610

Total unmethylated C's in CpG context:	15902
Total unmethylated C's in CHG context:	66016
Total unmethylated C's in CHH context:	198613
Total unmethylated C's in Unknown context:	1418

C methylated in CpG context:	68.3%
C methylated in CHG context:	3.0%
C methylated in CHH context:	15.9%
C methylated in unknown context (CN or CHN):	30.1%


Bismark completed in 0d 0h 1m 12s

====================
Bismark run complete
====================

Processing paired-end Bismark output file(s) (SAM format):
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam:	11352
Total number duplicated alignments removed:	1949 (17.17%)
Duplicated alignments were found at:	1480 different position(s)

Total count of deduplicated leftover sequences: 9403 (82.83% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam:	10979
Total number duplicated alignments removed:	2084 (18.98%)
Duplicated alignments were found at:	1583 different position(s)

Total count of deduplicated leftover sequences: 8895 (81.02% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam:	11729
Total number duplicated alignments removed:	2018 (17.21%)
Duplicated alignments were found at:	1582 different position(s)

Total count of deduplicated leftover sequences: 9711 (82.79% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam:	11180
Total number duplicated alignments removed:	1924 (17.21%)
Duplicated alignments were found at:	1513 different position(s)

Total count of deduplicated leftover sequences: 9256 (82.79% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam:	8111
Total number duplicated alignments removed:	1072 (13.22%)
Duplicated alignments were found at:	845 different position(s)

Total count of deduplicated leftover sequences: 7039 (86.78% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam:	7785
Total number duplicated alignments removed:	1398 (17.96%)
Duplicated alignments were found at:	1082 different position(s)

Total count of deduplicated leftover sequences: 6387 (82.04% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam:	11131
Total number duplicated alignments removed:	2072 (18.61%)
Duplicated alignments were found at:	1584 different position(s)

Total count of deduplicated leftover sequences: 9059 (81.39% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam:	10099
Total number duplicated alignments removed:	1525 (15.10%)
Duplicated alignments were found at:	1205 different position(s)

Total count of deduplicated leftover sequences: 8574 (84.90% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam:	7390
Total number duplicated alignments removed:	1311 (17.74%)
Duplicated alignments were found at:	964 different position(s)

Total count of deduplicated leftover sequences: 6079 (82.26% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam:	11495
Total number duplicated alignments removed:	2286 (19.89%)
Duplicated alignments were found at:	1720 different position(s)

Total count of deduplicated leftover sequences: 9209 (80.11% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam:	12164
Total number duplicated alignments removed:	2173 (17.86%)
Duplicated alignments were found at:	1655 different position(s)

Total count of deduplicated leftover sequences: 9991 (82.14% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam:	10961
Total number duplicated alignments removed:	1980 (18.06%)
Duplicated alignments were found at:	1512 different position(s)

Total count of deduplicated leftover sequences: 8981 (81.94% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam:	7412
Total number duplicated alignments removed:	1381 (18.63%)
Duplicated alignments were found at:	984 different position(s)

Total count of deduplicated leftover sequences: 6031 (81.37% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam:	8339
Total number duplicated alignments removed:	1326 (15.90%)
Duplicated alignments were found at:	1037 different position(s)

Total count of deduplicated leftover sequences: 7013 (84.10% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam:	11652
Total number duplicated alignments removed:	1950 (16.74%)
Duplicated alignments were found at:	1526 different position(s)

Total count of deduplicated leftover sequences: 9702 (83.26% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam:	11972
Total number duplicated alignments removed:	2071 (17.30%)
Duplicated alignments were found at:	1570 different position(s)

Total count of deduplicated leftover sequences: 9901 (82.70% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam:	11389
Total number duplicated alignments removed:	2109 (18.52%)
Duplicated alignments were found at:	1643 different position(s)

Total count of deduplicated leftover sequences: 9280 (81.48% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam:	11687
Total number duplicated alignments removed:	1857 (15.89%)
Duplicated alignments were found at:	1493 different position(s)

Total count of deduplicated leftover sequences: 9830 (84.11% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam:	9606
Total number duplicated alignments removed:	1369 (14.25%)
Duplicated alignments were found at:	1059 different position(s)

Total count of deduplicated leftover sequences: 8237 (85.75% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R2_001_val_2.fq.gz"
Processing paired-end Bismark output file(s) (SAM format):
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam


If there are several alignments to a single position in the genome the first alignment will be chosen. Since the input files are not in any way sorted this is a near-enough random selection of reads.

Checking file >>CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam<< for signs of file truncation...



Now testing Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam for positional sorting (which would be bad...)	...passed!
Output file is: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping header line:	@HD	VN:1.0	SO:unsorted
skipping header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skippin
Total number of alignments analysed in CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam:	11697
Total number duplicated alignments removed:	2008 (17.17%)
Duplicated alignments were found at:	1567 different position(s)

Total count of deduplicated leftover sequences: 9689 (82.83% of total)

g header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R2_001_val_2.fq.gz"

 *** Bismark methylation extractor version v0.21.0 ***

Trying to determine the type of mapping from the SAM header line of file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam
Treating file(s) as paired-end data (as extracted from @PG line)

Setting option '--no_overlap' since this is (normally) the right thing to do for paired-end data

Core usage currently set to more than 20 threads. Let's see how this goes... (set value: 28)

Summarising Bismark methylation extractor parameters:
===============================================================
Bismark paired-end SAM format specified (default)
Number of cores to be used: 28
Strand-specific outputs will be skipped. Separate output files for cytosines in CpG, CHG and CHH context will be generated
Merge CHG and CHH context to non-CpG context specified
Output will be written to the current directory ('/gscratch/scrubbed/sr320/031223-scont-17')


Summarising bedGraph parameters:
===============================================================
Generating additional output in bedGraph and coverage format
bedGraph format:	<Chromosome> <Start Position> <End Position> <Methylation Percentage>
coverage format:	<Chromosome> <Start Position> <End Position> <Methylation Percentage> <count methylated> <count non-methylated>

Using a cutoff of 1 read(s) to report cytosine positions
Reporting and sorting cytosine methylation information in CpG context only (default)
The bedGraph UNIX sort command will use the following memory setting:	'75%'. Temporary directory used for sorting is the output directory

Checking file >>CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297

Now reading in Bismark result file CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9403 lines in total
Total number of methylation call strings processed: 18806

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	179179

Total methylated C's in CpG context:	22701
Total methylated C's in CHG context:	918
Total methylated C's in CHH context:	14826

Total C to T conversions in CpG context:	7637
Total C to T conversions in CHG context:	35353
Total C to T conversions in CHH context:	97744

C methylated in CpG context:	74.8%
C methylated in non-CpG context:	10.6%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Finished processing child process. Exiting..

Merging individual splitting reports into overall report: 'CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 8895 lines in total
Total number of methylation call strings processed: 17790

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	141457

Total methylated C's in CpG context:	14151
Total methylated C's in CHG context:	742
Total methylated C's in CHH context:	15699

Total C to T conversions in CpG context:	6550
Total C to T conversions in CHG context:	25198
Total C to T conversions in CHH context:	79117

C methylated in CpG context:	68.4%
C methylated in non-CpG context:	13.6%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Now waiting for all child processes to complete
Finished processing child process. Exiting..
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Merging individual splitting reports into overall report: 'CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9711 lines in total
Total number of methylation call strings processed: 19422

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	182739

Total methylated C's in CpG context:	18478
Total methylated C's in CHG context:	854
Total methylated C's in CHH context:	15981

Total C to T conversions in CpG context:	8999
Total C to T conversions in CHG context:	34747
Total C to T conversions in CHH context:	103680

C methylated in CpG context:	67.2%
C methylated in non-CpG context:	10.8%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9256 lines in total
Total number of methylation call strings processed: 18512

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	149033

Total methylated C's in CpG context:	14798
Total methylated C's in CHG context:	910
Total methylated C's in CHH context:	18031

Total C to T conversions in CpG context:	6930
Total C to T conversions in CHG context:	27509
Total C to T conversions in CHH context:	80855

C methylated in CpG context:	68.1%
C methylated in non-CpG context:	14.9%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..

Merging individual splitting reports into overall report: 'CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 7039 lines in total
Total number of methylation call strings processed: 14078

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	105194

Total methylated C's in CpG context:	1486
Total methylated C's in CHG context:	666
Total methylated C's in CHH context:	34756

Total C to T conversions in CpG context:	10447
Total C to T conversions in CHG context:	13065
Total C to T conversions in CHH context:	44774

C methylated in CpG context:	12.5%
C methylated in non-CpG context:	38.0%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 6387 lines in total
Total number of methylation call strings processed: 12774

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	114939

Total methylated C's in CpG context:	3252
Total methylated C's in CHG context:	600
Total methylated C's in CHH context:	22662

Total C to T conversions in CpG context:	11177
Total C to T conversions in CHG context:	17471
Total C to T conversions in CHH context:	59777

C methylated in CpG context:	22.5%
C methylated in non-CpG context:	23.1%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..

Merging individual splitting reports into overall report: 'CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9059 lines in total
Total number of methylation call strings processed: 18118

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	187195

Total methylated C's in CpG context:	23336
Total methylated C's in CHG context:	993
Total methylated C's in CHH context:	14028

Total C to T conversions in CpG context:	8110
Total C to T conversions in CHG context:	37492
Total C to T conversions in CHH context:	103236

C methylated in CpG context:	74.2%
C methylated in non-CpG context:	9.6%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 8574 lines in total
Total number of methylation call strings processed: 17148

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	130337

Total methylated C's in CpG context:	8091
Total methylated C's in CHG context:	883
Total methylated C's in CHH context:	32774

Total C to T conversions in CpG context:	7654
Total C to T conversions in CHG context:	20771
Total C to T conversions in CHH context:	60164

C methylated in CpG context:	51.4%
C methylated in non-CpG context:	29.4%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 6079 lines in total
Total number of methylation call strings processed: 12158

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	124680

Total methylated C's in CpG context:	1234
Total methylated C's in CHG context:	498
Total methylated C's in CHH context:	17320

Total C to T conversions in CpG context:	13675
Total C to T conversions in CHG context:	19563
Total C to T conversions in CHH context:	72390

C methylated in CpG context:	8.3%
C methylated in non-CpG context:	16.2%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9209 lines in total
Total number of methylation call strings processed: 18418

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	169414

Total methylated C's in CpG context:	14989
Total methylated C's in CHG context:	954
Total methylated C's in CHH context:	24580

Total C to T conversions in CpG context:	8249
Total C to T conversions in CHG context:	31237
Total C to T conversions in CHH context:	89405

C methylated in CpG context:	64.5%
C methylated in non-CpG context:	17.5%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
Warning: unable to close filehandle IN properly.
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete
Finished processing child process. Exiting..
Finished processing child process. Exiting..

Merging individual splitting reports into overall report: 'CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9991 lines in total
Total number of methylation call strings processed: 19982

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	162790

Total methylated C's in CpG context:	18731
Total methylated C's in CHG context:	1112
Total methylated C's in CHH context:	23942

Total C to T conversions in CpG context:	7011
Total C to T conversions in CHG context:	31200
Total C to T conversions in CHH context:	80794

C methylated in CpG context:	72.8%
C methylated in non-CpG context:	18.3%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Now waiting for all child processes to complete
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Merging individual splitting reports into overall report: 'CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 8981 lines in total
Total number of methylation call strings processed: 17962

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	169440

Total methylated C's in CpG context:	17444
Total methylated C's in CHG context:	974
Total methylated C's in CHH context:	19195

Total C to T conversions in CpG context:	8691
Total C to T conversions in CHG context:	31410
Total C to T conversions in CHH context:	91726

C methylated in CpG context:	66.7%
C methylated in non-CpG context:	14.1%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 6031 lines in total
Total number of methylation call strings processed: 12062

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	118963

Total methylated C's in CpG context:	1288
Total methylated C's in CHG context:	647
Total methylated C's in CHH context:	16731

Total C to T conversions in CpG context:	12459
Total C to T conversions in CHG context:	18232
Total C to T conversions in CHH context:	69606

C methylated in CpG context:	9.4%
C methylated in non-CpG context:	16.5%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 7013 lines in total
Total number of methylation call strings processed: 14026

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	133881

Total methylated C's in CpG context:	1114
Total methylated C's in CHG context:	526
Total methylated C's in CHH context:	18067

Total C to T conversions in CpG context:	12338
Total C to T conversions in CHG context:	17626
Total C to T conversions in CHH context:	84210

C methylated in CpG context:	8.3%
C methylated in non-CpG context:	15.4%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Now waiting for all child processes to complete
Finished processing child process. Exiting..
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Finished processing child process. Exiting..

Merging individual splitting reports into overall report: 'CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9702 lines in total
Total number of methylation call strings processed: 19404

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	151562

Total methylated C's in CpG context:	14751
Total methylated C's in CHG context:	1005
Total methylated C's in CHH context:	22570

Total C to T conversions in CpG context:	6771
Total C to T conversions in CHG context:	25820
Total C to T conversions in CHH context:	80645

C methylated in CpG context:	68.5%
C methylated in non-CpG context:	18.1%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9901 lines in total
Total number of methylation call strings processed: 19802

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	201611

Total methylated C's in CpG context:	11079
Total methylated C's in CHG context:	969
Total methylated C's in CHH context:	24318

Total C to T conversions in CpG context:	11112
Total C to T conversions in CHG context:	32341
Total C to T conversions in CHH context:	121792

C methylated in CpG context:	49.9%
C methylated in non-CpG context:	14.1%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Now waiting for all child processes to complete
Finished processing child process. Exiting..
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Merging individual splitting reports into overall report: 'CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9280 lines in total
Total number of methylation call strings processed: 18560

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	171591

Total methylated C's in CpG context:	17396
Total methylated C's in CHG context:	1308
Total methylated C's in CHH context:	18733

Total C to T conversions in CpG context:	7951
Total C to T conversions in CHG context:	32623
Total C to T conversions in CHH context:	93580

C methylated in CpG context:	68.6%
C methylated in non-CpG context:	13.7%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam


Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
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Finished processing child process. Exiting..
Finished processing child process. Exiting..

Merging individual splitting reports into overall report: 'CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9830 lines in total
Total number of methylation call strings processed: 19660

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	171157

Total methylated C's in CpG context:	18504
Total methylated C's in CHG context:	1126
Total methylated C's in CHH context:	18515

Total C to T conversions in CpG context:	7053
Total C to T conversions in CHG context:	32427
Total C to T conversions in CHH context:	93532

C methylated in CpG context:	72.4%
C methylated in non-CpG context:	13.5%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Finished processing child process. Exiting..
Now waiting for all child processes to complete
Finished processing child process. Exiting..
Finished processing child process. Exiting..

Merging individual splitting reports into overall report: 'CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 8237 lines in total
Total number of methylation call strings processed: 16474

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	130801

Total methylated C's in CpG context:	4800
Total methylated C's in CHG context:	948
Total methylated C's in CHH context:	36225

Total C to T conversions in CpG context:	9837
Total C to T conversions in CHG context:	19172
Total C to T conversions in CHH context:	59819

C methylated in CpG context:	32.8%
C methylated in non-CpG context:	32.0%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Checking file >>CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation...


Now testing Bismark result file >CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam< for positional sorting (which would be bad...)	...passed!
Writing result file containing methylation information for C in CpG context to CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt
Writing result file containing methylation information for C in any other context to Non_CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.

Now reading in Bismark result file CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Warning: unable to close filehandle IN properly.
skipping SAM header line:	@HD	VN:1.0	SO:unsorted
skipping SAM header line:	@SQ	SN:PGA_scaffold0__40_contigs__length_4818635	LN:4818635
skipping SAM header line:	@SQ	SN:PGA_scaffold1__111_contigs__length_23635802	LN:23635802
skipping SAM header line:	@SQ	SN:PGA_scaffold2__216_contigs__length_42616187	LN:42616187
skipping SAM header line:	@SQ	SN:PGA_scaffold3__77_contigs__length_22140449	LN:22140449
skipping SAM header line:	@SQ	SN:PGA_scaffold4__118_contigs__length_24133938	LN:24133938
skipping SAM header line:	@SQ	SN:PGA_scaffold5__54_contigs__length_17529967	LN:17529967
skipping SAM header line:	@SQ	SN:PGA_scaffold6__2_contigs__length_4500	LN:4500
skipping SAM header line:	@SQ	SN:PGA_scaffold7__77_contigs__length_16129408	LN:16129408
skipping SAM header line:	@SQ	SN:PGA_scaffold8__70_contigs__length_6254265	LN:6254265
skipping SAM header line:	@SQ	SN:PGA_scaffold9__2_contigs__length_6774	LN:6774
skipping SAM header line:	@SQ	SN:PGA_scaffold10__58_contigs__length_8083807	LN:8083807
skipping SAM header line:	@SQ	SN:PGA_scaffold11__78_contigs__length_11409253	LN:11409253
skipping SAM header line:	@SQ	SN:PGA_scaffold12__214_contigs__length_38711105	LN:38711105
skipping SAM header line:	@SQ	SN:PGA_scaffold13__56_contigs__length_10281103	LN:10281103
skipping SAM header line:	@SQ	SN:PGA_scaffold14__49_contigs__length_6382615	LN:6382615
skipping SAM header line:	@SQ	SN:PGA_scaffold15__74_contigs__length_14466968	LN:14466968
skipping SAM header line:	@SQ	SN:PGA_scaffold16__99_contigs__length_13714835	LN:13714835
skipping SAM header line:	@SQ	SN:PGA_scaffold17__171_contigs__length_27881435	LN:27881435
skipping SAM header line:	@SQ	SN:PGA_scaffold18__98_contigs__length_15388888	LN:15388888
skipping SAM header line:	@SQ	SN:PGA_scaffold19__65_contigs__length_13296201	LN:13296201
skipping SAM header line:	@SQ	SN:PGA_scaffold20__42_contigs__length_7444180	LN:7444180
skipping SAM header line:	@SQ	SN:PGA_scaffold21__67_contigs__length_16858916	LN:16858916
skipping SAM header line:	@SQ	SN:PGA_scaffold22__59_contigs__length_10008237	LN:10008237
skipping SAM header line:	@SQ	SN:PGA_scaffold23__65_contigs__length_9586800	LN:9586800
skipping SAM header line:	@SQ	SN:PGA_scaffold24__25_contigs__length_9615596	LN:9615596
skipping SAM header line:	@SQ	SN:PGA_scaffold25__121_contigs__length_9021638	LN:9021638
skipping SAM header line:	@SQ	SN:PGA_scaffold26__34_contigs__length_3174094	LN:3174094
skipping SAM header line:	@SQ	SN:PGA_scaffold27__24_contigs__length_4511419	LN:4511419
skipping SAM header line:	@SQ	SN:PGA_scaffold28__73_contigs__length_10794191	LN:10794191
skipping SAM header line:	@SQ	SN:PGA_scaffold29__63_contigs__length_7458616	LN:7458616
skipping SAM header line:	@SQ	SN:PGA_scaffold30__53_contigs__length_3533588	LN:3533588
skipping SAM header line:	@SQ	SN:PGA_scaffold31__35_contigs__length_1951197	LN:1951197
skipping SAM header line:	@SQ	SN:PGA_scaffold32__48_contigs__length_8091588	LN:8091588
skipping SAM header line:	@SQ	SN:PGA_scaffold33__68_contigs__length_5591008	LN:5591008
skipping SAM header line:	@SQ	SN:PGA_scaffold34__18_contigs__length_2048619	LN:2048619
skipping SAM header line:	@SQ	SN:PGA_scaffold35__36_contigs__length_7416912	LN:7416912
skipping SAM header line:	@SQ	SN:PGA_scaffold36__50_contigs__length_8312113	LN:8312113
skipping SAM header line:	@SQ	SN:PGA_scaffold37__114_contigs__length_22981779	LN:22981779
skipping SAM header line:	@SQ	SN:PGA_scaffold38__30_contigs__length_10707134	LN:10707134
skipping SAM header line:	@SQ	SN:PGA_scaffold39__82_contigs__length_19157343	LN:19157343
skipping SAM header line:	@SQ	SN:PGA_scaffold40__81_contigs__length_9975379	LN:9975379
skipping SAM header line:	@SQ	SN:PGA_scaffold41__67_contigs__length_15779270	LN:15779270
skipping SAM header line:	@SQ	SN:PGA_scaffold42__119_contigs__length_25812110	LN:25812110
skipping SAM header line:	@SQ	SN:PGA_scaffold43__161_contigs__length_26349757	LN:26349757
skipping SAM header line:	@SQ	SN:PGA_scaffold44__101_contigs__length_25971783	LN:25971783
skipping SAM header line:	@SQ	SN:PGA_scaffold45__51_contigs__length_13476971	LN:13476971
skipping SAM header line:	@SQ	SN:PGA_scaffold46__73_contigs__length_12693875	LN:12693875
skipping SAM header line:	@SQ	SN:PGA_scaffold47__164_contigs__length_21858264	LN:21858264
skipping SAM header line:	@SQ	SN:PGA_scaffold48__117_contigs__length_14149252	LN:14149252
skipping SAM header line:	@SQ	SN:contig_1001_pilon__uns	LN:24935
skipping SAM header line:	@SQ	SN:contig_1002_pilon__uns	LN:4698
skipping SAM header line:	@SQ	SN:contig_1008_pilon__uns	LN:57313
skipping SAM header line:	@SQ	SN:contig_1013_pilon__uns	LN:9111
skipping SAM header line:	@SQ	SN:contig_1014_pilon__uns	LN:44146
skipping SAM header line:	@SQ	SN:contig_1015_pilon__uns	LN:40906
skipping SAM header line:	@SQ	SN:contig_1019_pilon__uns	LN:8123
skipping SAM header line:	@SQ	SN:contig_1020_pilon__uns	LN:6849
skipping SAM header line:	@SQ	SN:contig_1023_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1027_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_102_pilon__uns	LN:10606
skipping SAM header line:	@SQ	SN:contig_1031_pilon__uns	LN:12490
skipping SAM header line:	@SQ	SN:contig_1036_pilon__uns	LN:13977
skipping SAM header line:	@SQ	SN:contig_103_pilon__uns	LN:61341
skipping SAM header line:	@SQ	SN:contig_1041_pilon__uns	LN:4253
skipping SAM header line:	@SQ	SN:contig_1042_pilon__uns	LN:11130
skipping SAM header line:	@SQ	SN:contig_1043_pilon__uns	LN:5439
skipping SAM header line:	@SQ	SN:contig_1044_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_1045_pilon__uns	LN:47018
skipping SAM header line:	@SQ	SN:contig_1046_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_1049_pilon__uns	LN:8757
skipping SAM header line:	@SQ	SN:contig_1052_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1058_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1059_pilon__uns	LN:7499
skipping SAM header line:	@SQ	SN:contig_1060_pilon__uns	LN:7596
skipping SAM header line:	@SQ	SN:contig_1063_pilon__uns	LN:198857
skipping SAM header line:	@SQ	SN:contig_106_pilon__uns	LN:33964
skipping SAM header line:	@SQ	SN:contig_1070_pilon__uns	LN:5084
skipping SAM header line:	@SQ	SN:contig_1071_pilon__uns	LN:154066
skipping SAM header line:	@SQ	SN:contig_1089_pilon__uns	LN:68393
skipping SAM header line:	@SQ	SN:contig_1091_pilon__uns	LN:100377
skipping SAM header line:	@SQ	SN:contig_1094_pilon__uns	LN:87194
skipping SAM header line:	@SQ	SN:contig_1098_pilon__uns	LN:37678
skipping SAM header line:	@SQ	SN:contig_1114_pilon__uns	LN:8538
skipping SAM header line:	@SQ	SN:contig_1117_pilon__uns	LN:6576
skipping SAM header line:	@SQ	SN:contig_1118_pilon__uns	LN:71347
skipping SAM header line:	@SQ	SN:contig_111_pilon__uns	LN:9197
skipping SAM header line:	@SQ	SN:contig_1120_pilon__uns	LN:58926
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_1__uns	LN:26964
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1121_pilon___frag_3__uns	LN:119475
skipping SAM header line:	@SQ	SN:contig_1125_pilon__uns	LN:66086
skipping SAM header line:	@SQ	SN:contig_1130_pilon__uns	LN:6460
skipping SAM header line:	@SQ	SN:contig_1131_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_1__uns	LN:61276
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1134_pilon___frag_3__uns	LN:90619
skipping SAM header line:	@SQ	SN:contig_1139_pilon__uns	LN:1537
skipping SAM header line:	@SQ	SN:contig_1143_pilon__uns	LN:12495
skipping SAM header line:	@SQ	SN:contig_1144_pilon__uns	LN:10336
skipping SAM header line:	@SQ	SN:contig_1148_pilon__uns	LN:7436
skipping SAM header line:	@SQ	SN:contig_1152_pilon__uns	LN:1633
skipping SAM header line:	@SQ	SN:contig_1153_pilon__uns	LN:2819
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1155_pilon___frag_3__uns	LN:60624
skipping SAM header line:	@SQ	SN:contig_1159_pilon__uns	LN:16135
skipping SAM header line:	@SQ	SN:contig_117_pilon__uns	LN:63296
skipping SAM header line:	@SQ	SN:contig_1180_pilon__uns	LN:31661
skipping SAM header line:	@SQ	SN:contig_1183_pilon__uns	LN:11012
skipping SAM header line:	@SQ	SN:contig_1184_pilon__uns	LN:38297
skipping SAM header line:	@SQ	SN:contig_1200_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_1203_pilon__uns	LN:8323
skipping SAM header line:	@SQ	SN:contig_1206_pilon__uns	LN:102534
skipping SAM header line:	@SQ	SN:contig_1207_pilon__uns	LN:70975
skipping SAM header line:	@SQ	SN:contig_120_pilon__uns	LN:29591
skipping SAM header line:	@SQ	SN:contig_1213_pilon__uns	LN:40960
skipping SAM header line:	@SQ	SN:contig_1217_pilon__uns	LN:8036
skipping SAM header line:	@SQ	SN:contig_121_pilon__uns	LN:23633
skipping SAM header line:	@SQ	SN:contig_1223_pilon__uns	LN:7293
skipping SAM header line:	@SQ	SN:contig_1225_pilon__uns	LN:79347
skipping SAM header line:	@SQ	SN:contig_1226_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1229_pilon__uns	LN:19835
skipping SAM header line:	@SQ	SN:contig_122_pilon__uns	LN:76521
skipping SAM header line:	@SQ	SN:contig_1232_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_1__uns	LN:42810
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1233_pilon___frag_3__uns	LN:30586
skipping SAM header line:	@SQ	SN:contig_1235_pilon__uns	LN:24777
skipping SAM header line:	@SQ	SN:contig_1237_pilon__uns	LN:7501
skipping SAM header line:	@SQ	SN:contig_1239_pilon__uns	LN:21394
skipping SAM header line:	@SQ	SN:contig_1243_pilon__uns	LN:13143
skipping SAM header line:	@SQ	SN:contig_1244_pilon__uns	LN:46126
skipping SAM header line:	@SQ	SN:contig_1251_pilon__uns	LN:24697
skipping SAM header line:	@SQ	SN:contig_1254_pilon__uns	LN:138137
skipping SAM header line:	@SQ	SN:contig_1258_pilon__uns	LN:43372
skipping SAM header line:	@SQ	SN:contig_1260_pilon__uns	LN:1040
skipping SAM header line:	@SQ	SN:contig_126_pilon__uns	LN:8704
skipping SAM header line:	@SQ	SN:contig_1271_pilon__uns	LN:19214
skipping SAM header line:	@SQ	SN:contig_1274_pilon__uns	LN:13789
skipping SAM header line:	@SQ	SN:contig_1276_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_127_pilon__uns	LN:58735
skipping SAM header line:	@SQ	SN:contig_1281_pilon__uns	LN:9607
skipping SAM header line:	@SQ	SN:contig_1283_pilon__uns	LN:6790
skipping SAM header line:	@SQ	SN:contig_128_pilon__uns	LN:60259
skipping SAM header line:	@SQ	SN:contig_1291_pilon__uns	LN:51069
skipping SAM header line:	@SQ	SN:contig_1293_pilon__uns	LN:9825
skipping SAM header line:	@SQ	SN:contig_1301_pilon__uns	LN:59436
skipping SAM header line:	@SQ	SN:contig_1303_pilon__uns	LN:140324
skipping SAM header line:	@SQ	SN:contig_1304_pilon__uns	LN:6151
skipping SAM header line:	@SQ	SN:contig_1307_pilon__uns	LN:11511
skipping SAM header line:	@SQ	SN:contig_1308_pilon__uns	LN:5667
skipping SAM header line:	@SQ	SN:contig_1315_pilon__uns	LN:68888
skipping SAM header line:	@SQ	SN:contig_1318_pilon__uns	LN:18219
skipping SAM header line:	@SQ	SN:contig_1325_pilon__uns	LN:4706
skipping SAM header line:	@SQ	SN:contig_1329_pilon__uns	LN:46824
skipping SAM header line:	@SQ	SN:contig_1330_pilon__uns	LN:979
skipping SAM header line:	@SQ	SN:contig_1338_pilon__uns	LN:53862
skipping SAM header line:	@SQ	SN:contig_1339_pilon__uns	LN:4814
skipping SAM header line:	@SQ	SN:contig_1340_pilon__uns	LN:1169
skipping SAM header line:	@SQ	SN:contig_1342_pilon__uns	LN:53712
skipping SAM header line:	@SQ	SN:contig_1352_pilon__uns	LN:6426
skipping SAM header line:	@SQ	SN:contig_1353_pilon__uns	LN:3478
skipping SAM header line:	@SQ	SN:contig_1367_pilon__uns	LN:3758
skipping SAM header line:	@SQ	SN:contig_1368_pilon__uns	LN:6607
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_1__uns	LN:38395
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1372_pilon___frag_3__uns	LN:129081
skipping SAM header line:	@SQ	SN:contig_1374_pilon__uns	LN:21348
skipping SAM header line:	@SQ	SN:contig_1386_pilon__uns	LN:79771
skipping SAM header line:	@SQ	SN:contig_1387_pilon__uns	LN:7220
skipping SAM header line:	@SQ	SN:contig_1395_pilon__uns	LN:53397
skipping SAM header line:	@SQ	SN:contig_1398_pilon__uns	LN:6798
skipping SAM header line:	@SQ	SN:contig_1399_pilon__uns	LN:93880
skipping SAM header line:	@SQ	SN:contig_1409_pilon__uns	LN:10697
skipping SAM header line:	@SQ	SN:contig_140_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_1410_pilon__uns	LN:9598
skipping SAM header line:	@SQ	SN:contig_1415_pilon__uns	LN:51250
skipping SAM header line:	@SQ	SN:contig_1419_pilon__uns	LN:2382
skipping SAM header line:	@SQ	SN:contig_1422_pilon__uns	LN:45990
skipping SAM header line:	@SQ	SN:contig_1424_pilon__uns	LN:66490
skipping SAM header line:	@SQ	SN:contig_1426_pilon__uns	LN:9478
skipping SAM header line:	@SQ	SN:contig_1427_pilon__uns	LN:9638
skipping SAM header line:	@SQ	SN:contig_142_pilon__uns	LN:108204
skipping SAM header line:	@SQ	SN:contig_1434_pilon__uns	LN:78096
skipping SAM header line:	@SQ	SN:contig_1438_pilon__uns	LN:14730
skipping SAM header line:	@SQ	SN:contig_1439_pilon__uns	LN:119808
skipping SAM header line:	@SQ	SN:contig_1442_pilon__uns	LN:127178
skipping SAM header line:	@SQ	SN:contig_1444_pilon__uns	LN:45820
skipping SAM header line:	@SQ	SN:contig_1445_pilon__uns	LN:66094
skipping SAM header line:	@SQ	SN:contig_1451_pilon__uns	LN:4996
skipping SAM header line:	@SQ	SN:contig_1452_pilon__uns	LN:7524
skipping SAM header line:	@SQ	SN:contig_1454_pilon__uns	LN:2651
skipping SAM header line:	@SQ	SN:contig_145_pilon__uns	LN:51762
skipping SAM header line:	@SQ	SN:contig_1460_pilon__uns	LN:63184
skipping SAM header line:	@SQ	SN:contig_1461_pilon__uns	LN:43545
skipping SAM header line:	@SQ	SN:contig_146_pilon__uns	LN:27627
skipping SAM header line:	@SQ	SN:contig_1472_pilon__uns	LN:29562
skipping SAM header line:	@SQ	SN:contig_1473_pilon__uns	LN:1236
skipping SAM header line:	@SQ	SN:contig_1484_pilon__uns	LN:49420
skipping SAM header line:	@SQ	SN:contig_1488_pilon__uns	LN:17173
skipping SAM header line:	@SQ	SN:contig_1492_pilon__uns	LN:81729
skipping SAM header line:	@SQ	SN:contig_1493_pilon__uns	LN:4152
skipping SAM header line:	@SQ	SN:contig_1497_pilon__uns	LN:129627
skipping SAM header line:	@SQ	SN:contig_1498_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_1502_pilon__uns	LN:129747
skipping SAM header line:	@SQ	SN:contig_1511_pilon__uns	LN:5883
skipping SAM header line:	@SQ	SN:contig_1512_pilon__uns	LN:7280
skipping SAM header line:	@SQ	SN:contig_1513_pilon__uns	LN:48467
skipping SAM header line:	@SQ	SN:contig_1517_pilon__uns	LN:64708
skipping SAM header line:	@SQ	SN:contig_1522_pilon__uns	LN:4286
skipping SAM header line:	@SQ	SN:contig_1523_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_1525_pilon__uns	LN:332504
skipping SAM header line:	@SQ	SN:contig_1527_pilon__uns	LN:66946
skipping SAM header line:	@SQ	SN:contig_1528_pilon__uns	LN:4219
skipping SAM header line:	@SQ	SN:contig_1530_pilon__uns	LN:9690
skipping SAM header line:	@SQ	SN:contig_1533_pilon__uns	LN:268396
skipping SAM header line:	@SQ	SN:contig_1537_pilon__uns	LN:8915
skipping SAM header line:	@SQ	SN:contig_153_pilon__uns	LN:3777
skipping SAM header line:	@SQ	SN:contig_1540_pilon__uns	LN:95588
skipping SAM header line:	@SQ	SN:contig_1556_pilon__uns	LN:192087
skipping SAM header line:	@SQ	SN:contig_155_pilon__uns	LN:4791
skipping SAM header line:	@SQ	SN:contig_1560_pilon__uns	LN:333098
skipping SAM header line:	@SQ	SN:contig_1566_pilon__uns	LN:84111
skipping SAM header line:	@SQ	SN:contig_1571_pilon__uns	LN:14979
skipping SAM header line:	@SQ	SN:contig_157_pilon__uns	LN:49266
skipping SAM header line:	@SQ	SN:contig_1599_pilon__uns	LN:36273
skipping SAM header line:	@SQ	SN:contig_1600_pilon__uns	LN:89161
skipping SAM header line:	@SQ	SN:contig_1609_pilon__uns	LN:5790
skipping SAM header line:	@SQ	SN:contig_1611_pilon__uns	LN:3832
skipping SAM header line:	@SQ	SN:contig_1616_pilon__uns	LN:11738
skipping SAM header line:	@SQ	SN:contig_1620_pilon__uns	LN:7185
skipping SAM header line:	@SQ	SN:contig_1622_pilon__uns	LN:135668
skipping SAM header line:	@SQ	SN:contig_1628_pilon__uns	LN:13962
skipping SAM header line:	@SQ	SN:contig_1631_pilon__uns	LN:41184
skipping SAM header line:	@SQ	SN:contig_1638_pilon__uns	LN:19446
skipping SAM header line:	@SQ	SN:contig_1643_pilon__uns	LN:7932
skipping SAM header line:	@SQ	SN:contig_1645_pilon__uns	LN:5513
skipping SAM header line:	@SQ	SN:contig_1646_pilon__uns	LN:70602
skipping SAM header line:	@SQ	SN:contig_1650_pilon__uns	LN:3556
skipping SAM header line:	@SQ	SN:contig_1652_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_1655_pilon__uns	LN:164032
skipping SAM header line:	@SQ	SN:contig_1663_pilon__uns	LN:75097
skipping SAM header line:	@SQ	SN:contig_1664_pilon__uns	LN:5725
skipping SAM header line:	@SQ	SN:contig_1668_pilon__uns	LN:28516
skipping SAM header line:	@SQ	SN:contig_166_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1670_pilon__uns	LN:42678
skipping SAM header line:	@SQ	SN:contig_1671_pilon__uns	LN:114058
skipping SAM header line:	@SQ	SN:contig_1672_pilon__uns	LN:66804
skipping SAM header line:	@SQ	SN:contig_1676_pilon__uns	LN:47916
skipping SAM header line:	@SQ	SN:contig_1678_pilon__uns	LN:5925
skipping SAM header line:	@SQ	SN:contig_1680_pilon__uns	LN:11792
skipping SAM header line:	@SQ	SN:contig_1681_pilon__uns	LN:10846
skipping SAM header line:	@SQ	SN:contig_1685_pilon__uns	LN:5172
skipping SAM header line:	@SQ	SN:contig_1689_pilon__uns	LN:2288
skipping SAM header line:	@SQ	SN:contig_1691_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_1697_pilon__uns	LN:17619
skipping SAM header line:	@SQ	SN:contig_1706_pilon__uns	LN:82540
skipping SAM header line:	@SQ	SN:contig_1710_pilon__uns	LN:4131
skipping SAM header line:	@SQ	SN:contig_1714_pilon__uns	LN:24313
skipping SAM header line:	@SQ	SN:contig_1716_pilon__uns	LN:54164
skipping SAM header line:	@SQ	SN:contig_1720_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_1729_pilon__uns	LN:52598
skipping SAM header line:	@SQ	SN:contig_172_pilon__uns	LN:91557
skipping SAM header line:	@SQ	SN:contig_1730_pilon__uns	LN:32295
skipping SAM header line:	@SQ	SN:contig_1733_pilon__uns	LN:5020
skipping SAM header line:	@SQ	SN:contig_1734_pilon__uns	LN:1363
skipping SAM header line:	@SQ	SN:contig_1737_pilon__uns	LN:47521
skipping SAM header line:	@SQ	SN:contig_1739_pilon__uns	LN:5871
skipping SAM header line:	@SQ	SN:contig_1740_pilon__uns	LN:5852
skipping SAM header line:	@SQ	SN:contig_1742_pilon__uns	LN:4028
skipping SAM header line:	@SQ	SN:contig_1743_pilon__uns	LN:8595
skipping SAM header line:	@SQ	SN:contig_1744_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_1745_pilon__uns	LN:1561
skipping SAM header line:	@SQ	SN:contig_174_pilon__uns	LN:54007
skipping SAM header line:	@SQ	SN:contig_1752_pilon__uns	LN:10260
skipping SAM header line:	@SQ	SN:contig_1753_pilon__uns	LN:1883
skipping SAM header line:	@SQ	SN:contig_1755_pilon__uns	LN:2286
skipping SAM header line:	@SQ	SN:contig_1760_pilon__uns	LN:5666
skipping SAM header line:	@SQ	SN:contig_1761_pilon__uns	LN:7943
skipping SAM header line:	@SQ	SN:contig_1768_pilon__uns	LN:9947
skipping SAM header line:	@SQ	SN:contig_176_pilon__uns	LN:111249
skipping SAM header line:	@SQ	SN:contig_1770_pilon__uns	LN:2417
skipping SAM header line:	@SQ	SN:contig_1771_pilon__uns	LN:102605
skipping SAM header line:	@SQ	SN:contig_1772_pilon__uns	LN:2922
skipping SAM header line:	@SQ	SN:contig_1773_pilon__uns	LN:6935
skipping SAM header line:	@SQ	SN:contig_177_pilon__uns	LN:55932
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_1__uns	LN:45140
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1780_pilon___frag_3__uns	LN:50729
skipping SAM header line:	@SQ	SN:contig_1781_pilon__uns	LN:61091
skipping SAM header line:	@SQ	SN:contig_1787_pilon__uns	LN:1062
skipping SAM header line:	@SQ	SN:contig_1789_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_1__uns	LN:33876
skipping SAM header line:	@SQ	SN:contig_1795_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_1797_pilon__uns	LN:175015
skipping SAM header line:	@SQ	SN:contig_1801_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_180_pilon__uns	LN:33499
skipping SAM header line:	@SQ	SN:contig_1810_pilon__uns	LN:153616
skipping SAM header line:	@SQ	SN:contig_1811_pilon__uns	LN:7605
skipping SAM header line:	@SQ	SN:contig_1815_pilon__uns	LN:35821
skipping SAM header line:	@SQ	SN:contig_1816_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_1819_pilon__uns	LN:167132
skipping SAM header line:	@SQ	SN:contig_1829_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_1830_pilon__uns	LN:69382
skipping SAM header line:	@SQ	SN:contig_1834_pilon__uns	LN:55318
skipping SAM header line:	@SQ	SN:contig_1835_pilon__uns	LN:34243
skipping SAM header line:	@SQ	SN:contig_1839_pilon__uns	LN:125770
skipping SAM header line:	@SQ	SN:contig_1840_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_1846_pilon__uns	LN:76239
skipping SAM header line:	@SQ	SN:contig_1858_pilon__uns	LN:7093
skipping SAM header line:	@SQ	SN:contig_185_pilon__uns	LN:275460
skipping SAM header line:	@SQ	SN:contig_1864_pilon__uns	LN:14997
skipping SAM header line:	@SQ	SN:contig_1868_pilon__uns	LN:52567
skipping SAM header line:	@SQ	SN:contig_1869_pilon__uns	LN:5859
skipping SAM header line:	@SQ	SN:contig_1870_pilon__uns	LN:7657
skipping SAM header line:	@SQ	SN:contig_1875_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_1877_pilon__uns	LN:22793
skipping SAM header line:	@SQ	SN:contig_1878_pilon__uns	LN:1286
skipping SAM header line:	@SQ	SN:contig_1881_pilon__uns	LN:121974
skipping SAM header line:	@SQ	SN:contig_1883_pilon__uns	LN:42930
skipping SAM header line:	@SQ	SN:contig_1888_pilon__uns	LN:10580
skipping SAM header line:	@SQ	SN:contig_1892_pilon__uns	LN:196776
skipping SAM header line:	@SQ	SN:contig_1896_pilon__uns	LN:48012
skipping SAM header line:	@SQ	SN:contig_189_pilon__uns	LN:97499
skipping SAM header line:	@SQ	SN:contig_1902_pilon__uns	LN:58128
skipping SAM header line:	@SQ	SN:contig_1904_pilon__uns	LN:48727
skipping SAM header line:	@SQ	SN:contig_1907_pilon__uns	LN:89777
skipping SAM header line:	@SQ	SN:contig_1908_pilon__uns	LN:73277
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_1__uns	LN:111977
skipping SAM header line:	@SQ	SN:contig_190_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1916_pilon__uns	LN:6751
skipping SAM header line:	@SQ	SN:contig_1921_pilon__uns	LN:53726
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_1__uns	LN:77806
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_1923_pilon___frag_3__uns	LN:66044
skipping SAM header line:	@SQ	SN:contig_1924_pilon__uns	LN:78227
skipping SAM header line:	@SQ	SN:contig_1925_pilon__uns	LN:6811
skipping SAM header line:	@SQ	SN:contig_1926_pilon__uns	LN:2660
skipping SAM header line:	@SQ	SN:contig_1929_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_1__uns	LN:43524
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_3__uns	LN:27001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_4___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_1931_pilon___frag_5__uns	LN:83967
skipping SAM header line:	@SQ	SN:contig_1939_pilon__uns	LN:14772
skipping SAM header line:	@SQ	SN:contig_1940_pilon__uns	LN:24723
skipping SAM header line:	@SQ	SN:contig_1943_pilon__uns	LN:9260
skipping SAM header line:	@SQ	SN:contig_1945_pilon__uns	LN:7142
skipping SAM header line:	@SQ	SN:contig_1962_pilon__uns	LN:3945
skipping SAM header line:	@SQ	SN:contig_1963_pilon__uns	LN:99819
skipping SAM header line:	@SQ	SN:contig_1965_pilon__uns	LN:7850
skipping SAM header line:	@SQ	SN:contig_1969_pilon__uns	LN:115934
skipping SAM header line:	@SQ	SN:contig_1974_pilon__uns	LN:17359
skipping SAM header line:	@SQ	SN:contig_1989_pilon__uns	LN:31765
skipping SAM header line:	@SQ	SN:contig_1991_pilon__uns	LN:3288
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_1__uns	LN:145360
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_1993_pilon___frag_3__uns	LN:64133
skipping SAM header line:	@SQ	SN:contig_1998_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_199_pilon__uns	LN:151342
skipping SAM header line:	@SQ	SN:contig_1_pilon__uns	LN:81548
skipping SAM header line:	@SQ	SN:contig_2001_pilon__uns	LN:10224
skipping SAM header line:	@SQ	SN:contig_2002_pilon__uns	LN:30357
skipping SAM header line:	@SQ	SN:contig_2010_pilon__uns	LN:4207
skipping SAM header line:	@SQ	SN:contig_2014_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_203_pilon__uns	LN:74569
skipping SAM header line:	@SQ	SN:contig_2042_pilon__uns	LN:65692
skipping SAM header line:	@SQ	SN:contig_2049_pilon__uns	LN:1954
skipping SAM header line:	@SQ	SN:contig_204_pilon__uns	LN:196437
skipping SAM header line:	@SQ	SN:contig_2057_pilon__uns	LN:331809
skipping SAM header line:	@SQ	SN:contig_2060_pilon__uns	LN:38054
skipping SAM header line:	@SQ	SN:contig_2068_pilon__uns	LN:933
skipping SAM header line:	@SQ	SN:contig_2069_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_206_pilon__uns	LN:12803
skipping SAM header line:	@SQ	SN:contig_2078_pilon__uns	LN:309
skipping SAM header line:	@SQ	SN:contig_2087_pilon__uns	LN:14648
skipping SAM header line:	@SQ	SN:contig_2093_pilon__uns	LN:555
skipping SAM header line:	@SQ	SN:contig_2098_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_2100_pilon__uns	LN:12962
skipping SAM header line:	@SQ	SN:contig_210_pilon__uns	LN:104705
skipping SAM header line:	@SQ	SN:contig_2111_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_2112_pilon__uns	LN:19422
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_1__uns	LN:63350
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_211_pilon___frag_3__uns	LN:14643
skipping SAM header line:	@SQ	SN:contig_2122_pilon__uns	LN:4263
skipping SAM header line:	@SQ	SN:contig_2126_pilon__uns	LN:905
skipping SAM header line:	@SQ	SN:contig_2131_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_2139_pilon__uns	LN:562
skipping SAM header line:	@SQ	SN:contig_2140_pilon__uns	LN:31337
skipping SAM header line:	@SQ	SN:contig_2141_pilon__uns	LN:607
skipping SAM header line:	@SQ	SN:contig_2143_pilon__uns	LN:33651
skipping SAM header line:	@SQ	SN:contig_2149_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_2153_pilon__uns	LN:14315
skipping SAM header line:	@SQ	SN:contig_2164_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_2165_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2167_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_2168_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2176_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_217_pilon__uns	LN:59632
skipping SAM header line:	@SQ	SN:contig_2180_pilon__uns	LN:53284
skipping SAM header line:	@SQ	SN:contig_2182_pilon__uns	LN:12085
skipping SAM header line:	@SQ	SN:contig_2183_pilon__uns	LN:111072
skipping SAM header line:	@SQ	SN:contig_218_pilon__uns	LN:51761
skipping SAM header line:	@SQ	SN:contig_2192_pilon__uns	LN:14220
skipping SAM header line:	@SQ	SN:contig_2194_pilon__uns	LN:15147
skipping SAM header line:	@SQ	SN:contig_2198_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_219_pilon__uns	LN:100718
skipping SAM header line:	@SQ	SN:contig_2200_pilon__uns	LN:620
skipping SAM header line:	@SQ	SN:contig_2201_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_2207_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_2209_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_1__uns	LN:105323
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_220_pilon___frag_3__uns	LN:57273
skipping SAM header line:	@SQ	SN:contig_2213_pilon__uns	LN:3192
skipping SAM header line:	@SQ	SN:contig_2215_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_2216_pilon__uns	LN:971
skipping SAM header line:	@SQ	SN:contig_2236_pilon__uns	LN:641
skipping SAM header line:	@SQ	SN:contig_2238_pilon__uns	LN:621
skipping SAM header line:	@SQ	SN:contig_223_pilon__uns	LN:18750
skipping SAM header line:	@SQ	SN:contig_2240_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2242_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_2245_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_2247_pilon__uns	LN:3006
skipping SAM header line:	@SQ	SN:contig_2248_pilon__uns	LN:10338
skipping SAM header line:	@SQ	SN:contig_2249_pilon__uns	LN:19158
skipping SAM header line:	@SQ	SN:contig_2250_pilon__uns	LN:1328
skipping SAM header line:	@SQ	SN:contig_2251_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_2253_pilon__uns	LN:2210
skipping SAM header line:	@SQ	SN:contig_2254_pilon__uns	LN:83743
skipping SAM header line:	@SQ	SN:contig_2255_pilon__uns	LN:96187
skipping SAM header line:	@SQ	SN:contig_2259_pilon__uns	LN:4316
skipping SAM header line:	@SQ	SN:contig_225_pilon__uns	LN:2653
skipping SAM header line:	@SQ	SN:contig_2260_pilon__uns	LN:2598
skipping SAM header line:	@SQ	SN:contig_2262_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_2265_pilon__uns	LN:1986
skipping SAM header line:	@SQ	SN:contig_2271_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_2274_pilon__uns	LN:94906
skipping SAM header line:	@SQ	SN:contig_2278_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_2280_pilon__uns	LN:36570
skipping SAM header line:	@SQ	SN:contig_2281_pilon__uns	LN:1492
skipping SAM header line:	@SQ	SN:contig_2284_pilon__uns	LN:1520
skipping SAM header line:	@SQ	SN:contig_2286_pilon__uns	LN:236878
skipping SAM header line:	@SQ	SN:contig_2288_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_2289_pilon__uns	LN:3280
skipping SAM header line:	@SQ	SN:contig_2290_pilon__uns	LN:2724
skipping SAM header line:	@SQ	SN:contig_2291_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2292_pilon__uns	LN:2233
skipping SAM header line:	@SQ	SN:contig_2294_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_2295_pilon__uns	LN:73788
skipping SAM header line:	@SQ	SN:contig_2296_pilon__uns	LN:1506
skipping SAM header line:	@SQ	SN:contig_2297_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_2299_pilon__uns	LN:36259
skipping SAM header line:	@SQ	SN:contig_2302_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2304_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_2306_pilon__uns	LN:2728
skipping SAM header line:	@SQ	SN:contig_2309_pilon__uns	LN:219
skipping SAM header line:	@SQ	SN:contig_2311_pilon__uns	LN:2500
skipping SAM header line:	@SQ	SN:contig_2312_pilon__uns	LN:1505
skipping SAM header line:	@SQ	SN:contig_2313_pilon__uns	LN:12568
skipping SAM header line:	@SQ	SN:contig_2316_pilon__uns	LN:3744
skipping SAM header line:	@SQ	SN:contig_2317_pilon__uns	LN:1549
skipping SAM header line:	@SQ	SN:contig_2318_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2320_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_2321_pilon__uns	LN:2166
skipping SAM header line:	@SQ	SN:contig_2322_pilon__uns	LN:145225
skipping SAM header line:	@SQ	SN:contig_2325_pilon__uns	LN:703
skipping SAM header line:	@SQ	SN:contig_2326_pilon__uns	LN:7523
skipping SAM header line:	@SQ	SN:contig_2333_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2334_pilon__uns	LN:1491
skipping SAM header line:	@SQ	SN:contig_2336_pilon__uns	LN:1687
skipping SAM header line:	@SQ	SN:contig_2337_pilon__uns	LN:2645
skipping SAM header line:	@SQ	SN:contig_2339_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_233_pilon__uns	LN:80815
skipping SAM header line:	@SQ	SN:contig_2341_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_2344_pilon__uns	LN:2017
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_1__uns	LN:373001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_2___debris__uns	LN:25001
skipping SAM header line:	@SQ	SN:contig_2345_pilon___frag_3__uns	LN:285820
skipping SAM header line:	@SQ	SN:contig_2347_pilon__uns	LN:125671
skipping SAM header line:	@SQ	SN:contig_234_pilon__uns	LN:4757
skipping SAM header line:	@SQ	SN:contig_2354_pilon__uns	LN:573
skipping SAM header line:	@SQ	SN:contig_2355_pilon__uns	LN:3973
skipping SAM header line:	@SQ	SN:contig_2357_pilon__uns	LN:4960
skipping SAM header line:	@SQ	SN:contig_2358_pilon__uns	LN:975
skipping SAM header line:	@SQ	SN:contig_235_pilon__uns	LN:7871
skipping SAM header line:	@SQ	SN:contig_2360_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2362_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2363_pilon__uns	LN:1746
skipping SAM header line:	@SQ	SN:contig_2364_pilon__uns	LN:3331
skipping SAM header line:	@SQ	SN:contig_2365_pilon__uns	LN:2077
skipping SAM header line:	@SQ	SN:contig_2367_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_2368_pilon__uns	LN:395
skipping SAM header line:	@SQ	SN:contig_2369_pilon__uns	LN:3792
skipping SAM header line:	@SQ	SN:contig_236_pilon__uns	LN:36222
skipping SAM header line:	@SQ	SN:contig_2370_pilon__uns	LN:1473
skipping SAM header line:	@SQ	SN:contig_2376_pilon__uns	LN:28699
skipping SAM header line:	@SQ	SN:contig_2377_pilon__uns	LN:1055
skipping SAM header line:	@SQ	SN:contig_2378_pilon__uns	LN:14061
skipping SAM header line:	@SQ	SN:contig_2388_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_238_pilon__uns	LN:83364
skipping SAM header line:	@SQ	SN:contig_2390_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_2391_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_2392_pilon__uns	LN:26634
skipping SAM header line:	@SQ	SN:contig_2399_pilon__uns	LN:2663
skipping SAM header line:	@SQ	SN:contig_239_pilon__uns	LN:16492
skipping SAM header line:	@SQ	SN:contig_23_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2401_pilon__uns	LN:653
skipping SAM header line:	@SQ	SN:contig_2402_pilon__uns	LN:322
skipping SAM header line:	@SQ	SN:contig_2405_pilon__uns	LN:712
skipping SAM header line:	@SQ	SN:contig_2409_pilon__uns	LN:1319
skipping SAM header line:	@SQ	SN:contig_2411_pilon__uns	LN:1073
skipping SAM header line:	@SQ	SN:contig_2416_pilon__uns	LN:1050
skipping SAM header line:	@SQ	SN:contig_2417_pilon__uns	LN:826
skipping SAM header line:	@SQ	SN:contig_2418_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_2421_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2423_pilon__uns	LN:415
skipping SAM header line:	@SQ	SN:contig_2427_pilon__uns	LN:1624
skipping SAM header line:	@SQ	SN:contig_2430_pilon__uns	LN:60849
skipping SAM header line:	@SQ	SN:contig_2433_pilon__uns	LN:1823
skipping SAM header line:	@SQ	SN:contig_2434_pilon__uns	LN:7012
skipping SAM header line:	@SQ	SN:contig_2435_pilon__uns	LN:9205
skipping SAM header line:	@SQ	SN:contig_2439_pilon__uns	LN:12539
skipping SAM header line:	@SQ	SN:contig_2440_pilon__uns	LN:7010
skipping SAM header line:	@SQ	SN:contig_2443_pilon__uns	LN:81609
skipping SAM header line:	@SQ	SN:contig_2444_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_2446_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_2449_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_244_pilon__uns	LN:57586
skipping SAM header line:	@SQ	SN:contig_2455_pilon__uns	LN:1253
skipping SAM header line:	@SQ	SN:contig_2456_pilon__uns	LN:31799
skipping SAM header line:	@SQ	SN:contig_2457_pilon__uns	LN:1260
skipping SAM header line:	@SQ	SN:contig_2459_pilon__uns	LN:531
skipping SAM header line:	@SQ	SN:contig_2462_pilon__uns	LN:2784
skipping SAM header line:	@SQ	SN:contig_2463_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_2466_pilon__uns	LN:2353
skipping SAM header line:	@SQ	SN:contig_2469_pilon__uns	LN:2167
skipping SAM header line:	@SQ	SN:contig_2471_pilon__uns	LN:3449
skipping SAM header line:	@SQ	SN:contig_2473_pilon__uns	LN:6369
skipping SAM header line:	@SQ	SN:contig_2475_pilon__uns	LN:30412
skipping SAM header line:	@SQ	SN:contig_2476_pilon__uns	LN:540
skipping SAM header line:	@SQ	SN:contig_2477_pilon__uns	LN:1465
skipping SAM header line:	@SQ	SN:contig_247_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2480_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_2484_pilon__uns	LN:1677
skipping SAM header line:	@SQ	SN:contig_2486_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2487_pilon__uns	LN:5754
skipping SAM header line:	@SQ	SN:contig_248_pilon__uns	LN:159208
skipping SAM header line:	@SQ	SN:contig_2490_pilon__uns	LN:438
skipping SAM header line:	@SQ	SN:contig_2491_pilon__uns	LN:911
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_1__uns	LN:10126
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_2492_pilon___frag_3__uns	LN:154682
skipping SAM header line:	@SQ	SN:contig_2494_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_2497_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2499_pilon__uns	LN:1368
skipping SAM header line:	@SQ	SN:contig_2500_pilon__uns	LN:727
skipping SAM header line:	@SQ	SN:contig_2503_pilon__uns	LN:177249
skipping SAM header line:	@SQ	SN:contig_2507_pilon__uns	LN:19350
skipping SAM header line:	@SQ	SN:contig_2509_pilon__uns	LN:43484
skipping SAM header line:	@SQ	SN:contig_2510_pilon__uns	LN:22480
skipping SAM header line:	@SQ	SN:contig_2512_pilon__uns	LN:79056
skipping SAM header line:	@SQ	SN:contig_2513_pilon__uns	LN:763
skipping SAM header line:	@SQ	SN:contig_2515_pilon__uns	LN:38993
skipping SAM header line:	@SQ	SN:contig_2517_pilon__uns	LN:1251
skipping SAM header line:	@SQ	SN:contig_2518_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_2519_pilon__uns	LN:110862
skipping SAM header line:	@SQ	SN:contig_251_pilon__uns	LN:15036
skipping SAM header line:	@SQ	SN:contig_2520_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_2525_pilon__uns	LN:4277
skipping SAM header line:	@SQ	SN:contig_2527_pilon__uns	LN:62155
skipping SAM header line:	@SQ	SN:contig_252_pilon__uns	LN:74166
skipping SAM header line:	@SQ	SN:contig_2533_pilon__uns	LN:36092
skipping SAM header line:	@SQ	SN:contig_2535_pilon__uns	LN:2095
skipping SAM header line:	@SQ	SN:contig_2536_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_2539_pilon__uns	LN:261
skipping SAM header line:	@SQ	SN:contig_2540_pilon__uns	LN:770
skipping SAM header line:	@SQ	SN:contig_2544_pilon__uns	LN:14201
skipping SAM header line:	@SQ	SN:contig_2549_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2550_pilon__uns	LN:2710
skipping SAM header line:	@SQ	SN:contig_2551_pilon__uns	LN:1009
skipping SAM header line:	@SQ	SN:contig_2552_pilon__uns	LN:52219
skipping SAM header line:	@SQ	SN:contig_2555_pilon__uns	LN:665
skipping SAM header line:	@SQ	SN:contig_2560_pilon__uns	LN:18273
skipping SAM header line:	@SQ	SN:contig_2563_pilon__uns	LN:9393
skipping SAM header line:	@SQ	SN:contig_2564_pilon__uns	LN:2005
skipping SAM header line:	@SQ	SN:contig_2565_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2566_pilon__uns	LN:225
skipping SAM header line:	@SQ	SN:contig_2569_pilon__uns	LN:1094
skipping SAM header line:	@SQ	SN:contig_256_pilon__uns	LN:38364
skipping SAM header line:	@SQ	SN:contig_2570_pilon__uns	LN:8061
skipping SAM header line:	@SQ	SN:contig_2572_pilon__uns	LN:3376
skipping SAM header line:	@SQ	SN:contig_2574_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2587_pilon__uns	LN:7725
skipping SAM header line:	@SQ	SN:contig_2588_pilon__uns	LN:652
skipping SAM header line:	@SQ	SN:contig_2594_pilon__uns	LN:9117
skipping SAM header line:	@SQ	SN:contig_2595_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2596_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_2598_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_2600_pilon__uns	LN:25232
skipping SAM header line:	@SQ	SN:contig_2607_pilon__uns	LN:51272
skipping SAM header line:	@SQ	SN:contig_2608_pilon__uns	LN:2986
skipping SAM header line:	@SQ	SN:contig_2609_pilon__uns	LN:25503
skipping SAM header line:	@SQ	SN:contig_260_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_2610_pilon__uns	LN:18784
skipping SAM header line:	@SQ	SN:contig_2612_pilon__uns	LN:63149
skipping SAM header line:	@SQ	SN:contig_2613_pilon__uns	LN:4485
skipping SAM header line:	@SQ	SN:contig_2614_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2617_pilon__uns	LN:848
skipping SAM header line:	@SQ	SN:contig_2618_pilon__uns	LN:855
skipping SAM header line:	@SQ	SN:contig_2619_pilon__uns	LN:4174
skipping SAM header line:	@SQ	SN:contig_2620_pilon__uns	LN:1052
skipping SAM header line:	@SQ	SN:contig_2627_pilon__uns	LN:82536
skipping SAM header line:	@SQ	SN:contig_2628_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_1__uns	LN:65338
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2629_pilon___frag_3__uns	LN:50921
skipping SAM header line:	@SQ	SN:contig_262_pilon__uns	LN:1589
skipping SAM header line:	@SQ	SN:contig_2630_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2637_pilon__uns	LN:1206
skipping SAM header line:	@SQ	SN:contig_2639_pilon__uns	LN:17570
skipping SAM header line:	@SQ	SN:contig_2641_pilon__uns	LN:505
skipping SAM header line:	@SQ	SN:contig_2642_pilon__uns	LN:265261
skipping SAM header line:	@SQ	SN:contig_2643_pilon__uns	LN:70227
skipping SAM header line:	@SQ	SN:contig_2646_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_2650_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_2651_pilon__uns	LN:1228
skipping SAM header line:	@SQ	SN:contig_2653_pilon__uns	LN:728
skipping SAM header line:	@SQ	SN:contig_2654_pilon__uns	LN:3416
skipping SAM header line:	@SQ	SN:contig_2656_pilon__uns	LN:1327
skipping SAM header line:	@SQ	SN:contig_2657_pilon__uns	LN:205
skipping SAM header line:	@SQ	SN:contig_2663_pilon__uns	LN:1130
skipping SAM header line:	@SQ	SN:contig_2664_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_2666_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_2667_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_2669_pilon__uns	LN:103544
skipping SAM header line:	@SQ	SN:contig_266_pilon__uns	LN:26708
skipping SAM header line:	@SQ	SN:contig_2670_pilon__uns	LN:39150
skipping SAM header line:	@SQ	SN:contig_2671_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_2672_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2676_pilon__uns	LN:1309
skipping SAM header line:	@SQ	SN:contig_2677_pilon__uns	LN:2526
skipping SAM header line:	@SQ	SN:contig_2678_pilon__uns	LN:459
skipping SAM header line:	@SQ	SN:contig_2679_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_2683_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_2687_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_268_pilon__uns	LN:147305
skipping SAM header line:	@SQ	SN:contig_2694_pilon__uns	LN:2395
skipping SAM header line:	@SQ	SN:contig_2695_pilon__uns	LN:1546
skipping SAM header line:	@SQ	SN:contig_2699_pilon__uns	LN:226254
skipping SAM header line:	@SQ	SN:contig_269_pilon__uns	LN:60078
skipping SAM header line:	@SQ	SN:contig_2702_pilon__uns	LN:1751
skipping SAM header line:	@SQ	SN:contig_2706_pilon__uns	LN:1234
skipping SAM header line:	@SQ	SN:contig_2708_pilon__uns	LN:524
skipping SAM header line:	@SQ	SN:contig_2710_pilon__uns	LN:23943
skipping SAM header line:	@SQ	SN:contig_2714_pilon__uns	LN:574
skipping SAM header line:	@SQ	SN:contig_2717_pilon__uns	LN:2540
skipping SAM header line:	@SQ	SN:contig_2718_pilon__uns	LN:48717
skipping SAM header line:	@SQ	SN:contig_2719_pilon__uns	LN:420
skipping SAM header line:	@SQ	SN:contig_2722_pilon__uns	LN:4397
skipping SAM header line:	@SQ	SN:contig_2724_pilon__uns	LN:1666
skipping SAM header line:	@SQ	SN:contig_2725_pilon__uns	LN:24535
skipping SAM header line:	@SQ	SN:contig_2727_pilon__uns	LN:2113
skipping SAM header line:	@SQ	SN:contig_2730_pilon__uns	LN:62651
skipping SAM header line:	@SQ	SN:contig_2732_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_2735_pilon__uns	LN:17374
skipping SAM header line:	@SQ	SN:contig_2736_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_2738_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_2740_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2745_pilon__uns	LN:1908
skipping SAM header line:	@SQ	SN:contig_2747_pilon__uns	LN:1184
skipping SAM header line:	@SQ	SN:contig_2750_pilon__uns	LN:474
skipping SAM header line:	@SQ	SN:contig_2751_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_2753_pilon__uns	LN:2549
skipping SAM header line:	@SQ	SN:contig_2758_pilon__uns	LN:977
skipping SAM header line:	@SQ	SN:contig_2760_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_2763_pilon__uns	LN:111733
skipping SAM header line:	@SQ	SN:contig_2765_pilon__uns	LN:1704
skipping SAM header line:	@SQ	SN:contig_2766_pilon__uns	LN:785
skipping SAM header line:	@SQ	SN:contig_2767_pilon__uns	LN:9244
skipping SAM header line:	@SQ	SN:contig_2771_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_2773_pilon__uns	LN:1128
skipping SAM header line:	@SQ	SN:contig_2775_pilon__uns	LN:2933
skipping SAM header line:	@SQ	SN:contig_2777_pilon__uns	LN:1493
skipping SAM header line:	@SQ	SN:contig_2778_pilon__uns	LN:1109
skipping SAM header line:	@SQ	SN:contig_2779_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_2782_pilon__uns	LN:2365
skipping SAM header line:	@SQ	SN:contig_2787_pilon__uns	LN:61885
skipping SAM header line:	@SQ	SN:contig_2788_pilon__uns	LN:466
skipping SAM header line:	@SQ	SN:contig_2791_pilon__uns	LN:12555
skipping SAM header line:	@SQ	SN:contig_2792_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_2811_pilon__uns	LN:1204
skipping SAM header line:	@SQ	SN:contig_2815_pilon__uns	LN:1441
skipping SAM header line:	@SQ	SN:contig_2816_pilon__uns	LN:23180
skipping SAM header line:	@SQ	SN:contig_2817_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_2819_pilon__uns	LN:2116
skipping SAM header line:	@SQ	SN:contig_2820_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_2822_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2823_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_2824_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_2828_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_2829_pilon__uns	LN:3830
skipping SAM header line:	@SQ	SN:contig_282_pilon__uns	LN:114431
skipping SAM header line:	@SQ	SN:contig_2830_pilon__uns	LN:4737
skipping SAM header line:	@SQ	SN:contig_2832_pilon__uns	LN:1513
skipping SAM header line:	@SQ	SN:contig_2834_pilon__uns	LN:1295
skipping SAM header line:	@SQ	SN:contig_2835_pilon__uns	LN:2015
skipping SAM header line:	@SQ	SN:contig_2836_pilon__uns	LN:1051
skipping SAM header line:	@SQ	SN:contig_2838_pilon__uns	LN:3820
skipping SAM header line:	@SQ	SN:contig_2840_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2841_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_2846_pilon__uns	LN:12621
skipping SAM header line:	@SQ	SN:contig_2851_pilon__uns	LN:478
skipping SAM header line:	@SQ	SN:contig_2856_pilon__uns	LN:982
skipping SAM header line:	@SQ	SN:contig_2857_pilon__uns	LN:874
skipping SAM header line:	@SQ	SN:contig_2858_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_2859_pilon__uns	LN:548
skipping SAM header line:	@SQ	SN:contig_2861_pilon__uns	LN:1349
skipping SAM header line:	@SQ	SN:contig_2865_pilon__uns	LN:2328
skipping SAM header line:	@SQ	SN:contig_2867_pilon__uns	LN:3865
skipping SAM header line:	@SQ	SN:contig_2872_pilon__uns	LN:3672
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_1__uns	LN:101668
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_2874_pilon___frag_3__uns	LN:33619
skipping SAM header line:	@SQ	SN:contig_2875_pilon__uns	LN:10005
skipping SAM header line:	@SQ	SN:contig_2878_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_2879_pilon__uns	LN:2631
skipping SAM header line:	@SQ	SN:contig_2881_pilon__uns	LN:29620
skipping SAM header line:	@SQ	SN:contig_2882_pilon__uns	LN:9022
skipping SAM header line:	@SQ	SN:contig_2883_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_2884_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_2885_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_2886_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_2889_pilon__uns	LN:5611
skipping SAM header line:	@SQ	SN:contig_288_pilon__uns	LN:31635
skipping SAM header line:	@SQ	SN:contig_2894_pilon__uns	LN:5284
skipping SAM header line:	@SQ	SN:contig_2895_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_2896_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_3__uns	LN:43001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_5__uns	LN:28001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_6___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_289_pilon___frag_7__uns	LN:115135
skipping SAM header line:	@SQ	SN:contig_2900_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_2901_pilon__uns	LN:427
skipping SAM header line:	@SQ	SN:contig_2905_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_2906_pilon__uns	LN:557
skipping SAM header line:	@SQ	SN:contig_2909_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_2911_pilon__uns	LN:1067
skipping SAM header line:	@SQ	SN:contig_2920_pilon__uns	LN:2449
skipping SAM header line:	@SQ	SN:contig_2921_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_2922_pilon__uns	LN:1042
skipping SAM header line:	@SQ	SN:contig_2923_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_2924_pilon__uns	LN:1221
skipping SAM header line:	@SQ	SN:contig_2926_pilon__uns	LN:687
skipping SAM header line:	@SQ	SN:contig_2927_pilon__uns	LN:12971
skipping SAM header line:	@SQ	SN:contig_2928_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_2929_pilon__uns	LN:62462
skipping SAM header line:	@SQ	SN:contig_2932_pilon__uns	LN:7023
skipping SAM header line:	@SQ	SN:contig_2934_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_2935_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_2936_pilon__uns	LN:657
skipping SAM header line:	@SQ	SN:contig_2940_pilon__uns	LN:3555
skipping SAM header line:	@SQ	SN:contig_2941_pilon__uns	LN:526
skipping SAM header line:	@SQ	SN:contig_2942_pilon__uns	LN:5609
skipping SAM header line:	@SQ	SN:contig_2943_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_2946_pilon__uns	LN:1412
skipping SAM header line:	@SQ	SN:contig_2948_pilon__uns	LN:2064
skipping SAM header line:	@SQ	SN:contig_2949_pilon__uns	LN:45798
skipping SAM header line:	@SQ	SN:contig_294_pilon__uns	LN:4853
skipping SAM header line:	@SQ	SN:contig_2950_pilon__uns	LN:202324
skipping SAM header line:	@SQ	SN:contig_2951_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_2952_pilon__uns	LN:75605
skipping SAM header line:	@SQ	SN:contig_2953_pilon__uns	LN:1075
skipping SAM header line:	@SQ	SN:contig_2954_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_2955_pilon__uns	LN:816
skipping SAM header line:	@SQ	SN:contig_2960_pilon__uns	LN:1118
skipping SAM header line:	@SQ	SN:contig_2962_pilon__uns	LN:4637
skipping SAM header line:	@SQ	SN:contig_2965_pilon__uns	LN:148305
skipping SAM header line:	@SQ	SN:contig_2966_pilon__uns	LN:543
skipping SAM header line:	@SQ	SN:contig_2967_pilon__uns	LN:5959
skipping SAM header line:	@SQ	SN:contig_2968_pilon__uns	LN:3698
skipping SAM header line:	@SQ	SN:contig_2969_pilon__uns	LN:920
skipping SAM header line:	@SQ	SN:contig_2970_pilon__uns	LN:358
skipping SAM header line:	@SQ	SN:contig_2973_pilon__uns	LN:258
skipping SAM header line:	@SQ	SN:contig_2976_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_2978_pilon__uns	LN:644
skipping SAM header line:	@SQ	SN:contig_2980_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_2981_pilon__uns	LN:213477
skipping SAM header line:	@SQ	SN:contig_2983_pilon__uns	LN:454
skipping SAM header line:	@SQ	SN:contig_2984_pilon__uns	LN:766
skipping SAM header line:	@SQ	SN:contig_2987_pilon__uns	LN:2463
skipping SAM header line:	@SQ	SN:contig_2994_pilon__uns	LN:44412
skipping SAM header line:	@SQ	SN:contig_2997_pilon__uns	LN:787
skipping SAM header line:	@SQ	SN:contig_2999_pilon__uns	LN:2316
skipping SAM header line:	@SQ	SN:contig_3000_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_3001_pilon__uns	LN:100813
skipping SAM header line:	@SQ	SN:contig_3002_pilon__uns	LN:749
skipping SAM header line:	@SQ	SN:contig_3003_pilon__uns	LN:553
skipping SAM header line:	@SQ	SN:contig_3004_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_3009_pilon__uns	LN:29579
skipping SAM header line:	@SQ	SN:contig_3010_pilon__uns	LN:521
skipping SAM header line:	@SQ	SN:contig_3013_pilon__uns	LN:283
skipping SAM header line:	@SQ	SN:contig_3015_pilon__uns	LN:919
skipping SAM header line:	@SQ	SN:contig_3017_pilon__uns	LN:4628
skipping SAM header line:	@SQ	SN:contig_3019_pilon__uns	LN:23441
skipping SAM header line:	@SQ	SN:contig_3020_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3022_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_3024_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_3025_pilon__uns	LN:1923
skipping SAM header line:	@SQ	SN:contig_3026_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3027_pilon__uns	LN:1140
skipping SAM header line:	@SQ	SN:contig_3028_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_1__uns	LN:69854
skipping SAM header line:	@SQ	SN:contig_3032_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3036_pilon__uns	LN:1233
skipping SAM header line:	@SQ	SN:contig_303_pilon__uns	LN:95309
skipping SAM header line:	@SQ	SN:contig_3040_pilon__uns	LN:12459
skipping SAM header line:	@SQ	SN:contig_3041_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3043_pilon__uns	LN:1171
skipping SAM header line:	@SQ	SN:contig_3044_pilon__uns	LN:9894
skipping SAM header line:	@SQ	SN:contig_3047_pilon__uns	LN:699
skipping SAM header line:	@SQ	SN:contig_3055_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_3058_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_3061_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_3064_pilon__uns	LN:3245
skipping SAM header line:	@SQ	SN:contig_3068_pilon__uns	LN:1290
skipping SAM header line:	@SQ	SN:contig_3070_pilon__uns	LN:4062
skipping SAM header line:	@SQ	SN:contig_3072_pilon__uns	LN:1632
skipping SAM header line:	@SQ	SN:contig_3073_pilon__uns	LN:789
skipping SAM header line:	@SQ	SN:contig_3074_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3079_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3086_pilon__uns	LN:9591
skipping SAM header line:	@SQ	SN:contig_3087_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_3088_pilon__uns	LN:95412
skipping SAM header line:	@SQ	SN:contig_3090_pilon__uns	LN:29503
skipping SAM header line:	@SQ	SN:contig_3093_pilon__uns	LN:2620
skipping SAM header line:	@SQ	SN:contig_3102_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_3103_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_3104_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_3106_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_310_pilon__uns	LN:3958
skipping SAM header line:	@SQ	SN:contig_3112_pilon__uns	LN:1008
skipping SAM header line:	@SQ	SN:contig_3113_pilon__uns	LN:802
skipping SAM header line:	@SQ	SN:contig_3120_pilon__uns	LN:234133
skipping SAM header line:	@SQ	SN:contig_3126_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3127_pilon__uns	LN:11783
skipping SAM header line:	@SQ	SN:contig_312_pilon__uns	LN:11570
skipping SAM header line:	@SQ	SN:contig_3130_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3132_pilon__uns	LN:12853
skipping SAM header line:	@SQ	SN:contig_3133_pilon__uns	LN:2642
skipping SAM header line:	@SQ	SN:contig_3138_pilon__uns	LN:3637
skipping SAM header line:	@SQ	SN:contig_3141_pilon__uns	LN:700
skipping SAM header line:	@SQ	SN:contig_3142_pilon__uns	LN:1053
skipping SAM header line:	@SQ	SN:contig_3144_pilon__uns	LN:1077
skipping SAM header line:	@SQ	SN:contig_3146_pilon__uns	LN:514
skipping SAM header line:	@SQ	SN:contig_3147_pilon__uns	LN:3536
skipping SAM header line:	@SQ	SN:contig_3150_pilon__uns	LN:22745
skipping SAM header line:	@SQ	SN:contig_3151_pilon__uns	LN:753
skipping SAM header line:	@SQ	SN:contig_3153_pilon__uns	LN:561
skipping SAM header line:	@SQ	SN:contig_3155_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3156_pilon__uns	LN:23398
skipping SAM header line:	@SQ	SN:contig_315_pilon__uns	LN:131916
skipping SAM header line:	@SQ	SN:contig_3160_pilon__uns	LN:5210
skipping SAM header line:	@SQ	SN:contig_3161_pilon__uns	LN:605
skipping SAM header line:	@SQ	SN:contig_3163_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_3166_pilon__uns	LN:1335
skipping SAM header line:	@SQ	SN:contig_3169_pilon__uns	LN:5058
skipping SAM header line:	@SQ	SN:contig_3172_pilon__uns	LN:637
skipping SAM header line:	@SQ	SN:contig_3173_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_3177_pilon__uns	LN:589
skipping SAM header line:	@SQ	SN:contig_3180_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_3181_pilon__uns	LN:3343
skipping SAM header line:	@SQ	SN:contig_3185_pilon__uns	LN:2627
skipping SAM header line:	@SQ	SN:contig_3186_pilon__uns	LN:25243
skipping SAM header line:	@SQ	SN:contig_3190_pilon__uns	LN:890
skipping SAM header line:	@SQ	SN:contig_3192_pilon__uns	LN:1147
skipping SAM header line:	@SQ	SN:contig_3194_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_3197_pilon__uns	LN:18566
skipping SAM header line:	@SQ	SN:contig_3199_pilon__uns	LN:4327
skipping SAM header line:	@SQ	SN:contig_31_pilon__uns	LN:54961
skipping SAM header line:	@SQ	SN:contig_3200_pilon__uns	LN:2159
skipping SAM header line:	@SQ	SN:contig_3201_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3203_pilon__uns	LN:27609
skipping SAM header line:	@SQ	SN:contig_3204_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3209_pilon__uns	LN:1162
skipping SAM header line:	@SQ	SN:contig_320_pilon__uns	LN:3760
skipping SAM header line:	@SQ	SN:contig_3211_pilon__uns	LN:12527
skipping SAM header line:	@SQ	SN:contig_3212_pilon__uns	LN:4732
skipping SAM header line:	@SQ	SN:contig_3213_pilon__uns	LN:632
skipping SAM header line:	@SQ	SN:contig_3220_pilon__uns	LN:2847
skipping SAM header line:	@SQ	SN:contig_3223_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3224_pilon__uns	LN:161790
skipping SAM header line:	@SQ	SN:contig_3225_pilon__uns	LN:3471
skipping SAM header line:	@SQ	SN:contig_3228_pilon__uns	LN:11303
skipping SAM header line:	@SQ	SN:contig_3230_pilon__uns	LN:1674
skipping SAM header line:	@SQ	SN:contig_3231_pilon__uns	LN:1302
skipping SAM header line:	@SQ	SN:contig_3232_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_3233_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_3235_pilon__uns	LN:1379
skipping SAM header line:	@SQ	SN:contig_3236_pilon__uns	LN:623
skipping SAM header line:	@SQ	SN:contig_3237_pilon__uns	LN:102454
skipping SAM header line:	@SQ	SN:contig_3243_pilon__uns	LN:3470
skipping SAM header line:	@SQ	SN:contig_3244_pilon__uns	LN:810
skipping SAM header line:	@SQ	SN:contig_3249_pilon__uns	LN:594
skipping SAM header line:	@SQ	SN:contig_3251_pilon__uns	LN:974
skipping SAM header line:	@SQ	SN:contig_3252_pilon__uns	LN:22315
skipping SAM header line:	@SQ	SN:contig_3254_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_3257_pilon__uns	LN:6843
skipping SAM header line:	@SQ	SN:contig_3258_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3259_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3260_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_3261_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3262_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_3266_pilon__uns	LN:4150
skipping SAM header line:	@SQ	SN:contig_3269_pilon__uns	LN:1844
skipping SAM header line:	@SQ	SN:contig_327_pilon__uns	LN:298262
skipping SAM header line:	@SQ	SN:contig_3284_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_3285_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3295_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3298_pilon__uns	LN:1724
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_1__uns	LN:22116
skipping SAM header line:	@SQ	SN:contig_32_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_3301_pilon__uns	LN:31796
skipping SAM header line:	@SQ	SN:contig_3302_pilon__uns	LN:1657
skipping SAM header line:	@SQ	SN:contig_3305_pilon__uns	LN:772
skipping SAM header line:	@SQ	SN:contig_3306_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_3307_pilon__uns	LN:668
skipping SAM header line:	@SQ	SN:contig_3311_pilon__uns	LN:1660
skipping SAM header line:	@SQ	SN:contig_3317_pilon__uns	LN:729
skipping SAM header line:	@SQ	SN:contig_3318_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_3319_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_331_pilon__uns	LN:2604
skipping SAM header line:	@SQ	SN:contig_3320_pilon__uns	LN:111711
skipping SAM header line:	@SQ	SN:contig_3321_pilon__uns	LN:251448
skipping SAM header line:	@SQ	SN:contig_3323_pilon__uns	LN:912
skipping SAM header line:	@SQ	SN:contig_3326_pilon__uns	LN:1756
skipping SAM header line:	@SQ	SN:contig_3327_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_3331_pilon__uns	LN:3077
skipping SAM header line:	@SQ	SN:contig_3339_pilon__uns	LN:2823
skipping SAM header line:	@SQ	SN:contig_3342_pilon__uns	LN:2090
skipping SAM header line:	@SQ	SN:contig_3343_pilon__uns	LN:18928
skipping SAM header line:	@SQ	SN:contig_3344_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_3346_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3347_pilon__uns	LN:2314
skipping SAM header line:	@SQ	SN:contig_3348_pilon__uns	LN:1352
skipping SAM header line:	@SQ	SN:contig_334_pilon__uns	LN:15492
skipping SAM header line:	@SQ	SN:contig_3351_pilon__uns	LN:16074
skipping SAM header line:	@SQ	SN:contig_3352_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_3353_pilon__uns	LN:1112
skipping SAM header line:	@SQ	SN:contig_3354_pilon__uns	LN:3305
skipping SAM header line:	@SQ	SN:contig_3355_pilon__uns	LN:4077
skipping SAM header line:	@SQ	SN:contig_3358_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_3360_pilon__uns	LN:590
skipping SAM header line:	@SQ	SN:contig_3361_pilon__uns	LN:5598
skipping SAM header line:	@SQ	SN:contig_3363_pilon__uns	LN:469
skipping SAM header line:	@SQ	SN:contig_3367_pilon__uns	LN:1065
skipping SAM header line:	@SQ	SN:contig_3368_pilon__uns	LN:62060
skipping SAM header line:	@SQ	SN:contig_3369_pilon__uns	LN:1041
skipping SAM header line:	@SQ	SN:contig_336_pilon__uns	LN:24230
skipping SAM header line:	@SQ	SN:contig_3372_pilon__uns	LN:1148
skipping SAM header line:	@SQ	SN:contig_3373_pilon__uns	LN:754
skipping SAM header line:	@SQ	SN:contig_3384_pilon__uns	LN:783
skipping SAM header line:	@SQ	SN:contig_3389_pilon__uns	LN:4477
skipping SAM header line:	@SQ	SN:contig_338_pilon__uns	LN:124246
skipping SAM header line:	@SQ	SN:contig_3392_pilon__uns	LN:963
skipping SAM header line:	@SQ	SN:contig_3396_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_3399_pilon__uns	LN:1459
skipping SAM header line:	@SQ	SN:contig_3400_pilon__uns	LN:570
skipping SAM header line:	@SQ	SN:contig_3402_pilon__uns	LN:1591
skipping SAM header line:	@SQ	SN:contig_3405_pilon__uns	LN:36874
skipping SAM header line:	@SQ	SN:contig_3406_pilon__uns	LN:3141
skipping SAM header line:	@SQ	SN:contig_3407_pilon__uns	LN:646
skipping SAM header line:	@SQ	SN:contig_3408_pilon__uns	LN:819
skipping SAM header line:	@SQ	SN:contig_3410_pilon__uns	LN:3795
skipping SAM header line:	@SQ	SN:contig_3412_pilon__uns	LN:1602
skipping SAM header line:	@SQ	SN:contig_3415_pilon__uns	LN:614
skipping SAM header line:	@SQ	SN:contig_3416_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_3418_pilon__uns	LN:1250
skipping SAM header line:	@SQ	SN:contig_3419_pilon__uns	LN:3300
skipping SAM header line:	@SQ	SN:contig_3421_pilon__uns	LN:798
skipping SAM header line:	@SQ	SN:contig_3422_pilon__uns	LN:509
skipping SAM header line:	@SQ	SN:contig_3424_pilon__uns	LN:5893
skipping SAM header line:	@SQ	SN:contig_3427_pilon__uns	LN:1819
skipping SAM header line:	@SQ	SN:contig_3430_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_3431_pilon__uns	LN:11459
skipping SAM header line:	@SQ	SN:contig_3432_pilon__uns	LN:1950
skipping SAM header line:	@SQ	SN:contig_3433_pilon__uns	LN:32025
skipping SAM header line:	@SQ	SN:contig_3435_pilon__uns	LN:10888
skipping SAM header line:	@SQ	SN:contig_3436_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_3437_pilon__uns	LN:1243
skipping SAM header line:	@SQ	SN:contig_3441_pilon__uns	LN:960
skipping SAM header line:	@SQ	SN:contig_3442_pilon__uns	LN:587
skipping SAM header line:	@SQ	SN:contig_3445_pilon__uns	LN:2891
skipping SAM header line:	@SQ	SN:contig_3448_pilon__uns	LN:26440
skipping SAM header line:	@SQ	SN:contig_3450_pilon__uns	LN:1015
skipping SAM header line:	@SQ	SN:contig_3455_pilon__uns	LN:6592
skipping SAM header line:	@SQ	SN:contig_3456_pilon__uns	LN:18185
skipping SAM header line:	@SQ	SN:contig_3466_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3467_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_3470_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_3474_pilon__uns	LN:610
skipping SAM header line:	@SQ	SN:contig_3475_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_3482_pilon__uns	LN:929
skipping SAM header line:	@SQ	SN:contig_3484_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_3486_pilon__uns	LN:2161
skipping SAM header line:	@SQ	SN:contig_3487_pilon__uns	LN:547
skipping SAM header line:	@SQ	SN:contig_3488_pilon__uns	LN:4700
skipping SAM header line:	@SQ	SN:contig_3489_pilon__uns	LN:601
skipping SAM header line:	@SQ	SN:contig_3494_pilon__uns	LN:2448
skipping SAM header line:	@SQ	SN:contig_3495_pilon__uns	LN:10453
skipping SAM header line:	@SQ	SN:contig_3496_pilon__uns	LN:4759
skipping SAM header line:	@SQ	SN:contig_3497_pilon__uns	LN:10997
skipping SAM header line:	@SQ	SN:contig_3501_pilon__uns	LN:893
skipping SAM header line:	@SQ	SN:contig_3504_pilon__uns	LN:260
skipping SAM header line:	@SQ	SN:contig_3507_pilon__uns	LN:4037
skipping SAM header line:	@SQ	SN:contig_3510_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_3514_pilon__uns	LN:1085
skipping SAM header line:	@SQ	SN:contig_3521_pilon__uns	LN:33996
skipping SAM header line:	@SQ	SN:contig_3524_pilon__uns	LN:213
skipping SAM header line:	@SQ	SN:contig_3527_pilon__uns	LN:680
skipping SAM header line:	@SQ	SN:contig_3528_pilon__uns	LN:1675
skipping SAM header line:	@SQ	SN:contig_352_pilon__uns	LN:11196
skipping SAM header line:	@SQ	SN:contig_3531_pilon__uns	LN:4804
skipping SAM header line:	@SQ	SN:contig_3533_pilon__uns	LN:2242
skipping SAM header line:	@SQ	SN:contig_3538_pilon__uns	LN:939
skipping SAM header line:	@SQ	SN:contig_353_pilon__uns	LN:100892
skipping SAM header line:	@SQ	SN:contig_3540_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_3541_pilon__uns	LN:1416
skipping SAM header line:	@SQ	SN:contig_3544_pilon__uns	LN:794
skipping SAM header line:	@SQ	SN:contig_3546_pilon__uns	LN:1288
skipping SAM header line:	@SQ	SN:contig_3547_pilon__uns	LN:1487
skipping SAM header line:	@SQ	SN:contig_3549_pilon__uns	LN:736
skipping SAM header line:	@SQ	SN:contig_3552_pilon__uns	LN:13390
skipping SAM header line:	@SQ	SN:contig_3553_pilon__uns	LN:4396
skipping SAM header line:	@SQ	SN:contig_3558_pilon__uns	LN:50239
skipping SAM header line:	@SQ	SN:contig_355_pilon__uns	LN:40018
skipping SAM header line:	@SQ	SN:contig_3560_pilon__uns	LN:718
skipping SAM header line:	@SQ	SN:contig_3562_pilon__uns	LN:672
skipping SAM header line:	@SQ	SN:contig_3564_pilon__uns	LN:2057
skipping SAM header line:	@SQ	SN:contig_3565_pilon__uns	LN:490
skipping SAM header line:	@SQ	SN:contig_356_pilon__uns	LN:71027
skipping SAM header line:	@SQ	SN:contig_3572_pilon__uns	LN:38558
skipping SAM header line:	@SQ	SN:contig_3574_pilon__uns	LN:577
skipping SAM header line:	@SQ	SN:contig_3575_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_3576_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_3578_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_3579_pilon__uns	LN:1588
skipping SAM header line:	@SQ	SN:contig_3580_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_3582_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_3584_pilon__uns	LN:1159
skipping SAM header line:	@SQ	SN:contig_3585_pilon__uns	LN:4714
skipping SAM header line:	@SQ	SN:contig_3590_pilon__uns	LN:4696
skipping SAM header line:	@SQ	SN:contig_3591_pilon__uns	LN:539
skipping SAM header line:	@SQ	SN:contig_3592_pilon__uns	LN:622
skipping SAM header line:	@SQ	SN:contig_3596_pilon__uns	LN:1081
skipping SAM header line:	@SQ	SN:contig_3598_pilon__uns	LN:6106
skipping SAM header line:	@SQ	SN:contig_3600_pilon__uns	LN:39741
skipping SAM header line:	@SQ	SN:contig_3605_pilon__uns	LN:485
skipping SAM header line:	@SQ	SN:contig_3606_pilon__uns	LN:880
skipping SAM header line:	@SQ	SN:contig_3607_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_3608_pilon__uns	LN:1211
skipping SAM header line:	@SQ	SN:contig_360_pilon__uns	LN:5796
skipping SAM header line:	@SQ	SN:contig_3610_pilon__uns	LN:1885
skipping SAM header line:	@SQ	SN:contig_3611_pilon__uns	LN:4180
skipping SAM header line:	@SQ	SN:contig_3612_pilon__uns	LN:615
skipping SAM header line:	@SQ	SN:contig_361_pilon__uns	LN:15591
skipping SAM header line:	@SQ	SN:contig_3620_pilon__uns	LN:692
skipping SAM header line:	@SQ	SN:contig_3624_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_3625_pilon__uns	LN:21166
skipping SAM header line:	@SQ	SN:contig_3628_pilon__uns	LN:40175
skipping SAM header line:	@SQ	SN:contig_3629_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_3630_pilon__uns	LN:5219
skipping SAM header line:	@SQ	SN:contig_3631_pilon__uns	LN:978
skipping SAM header line:	@SQ	SN:contig_3632_pilon__uns	LN:5773
skipping SAM header line:	@SQ	SN:contig_3636_pilon__uns	LN:973
skipping SAM header line:	@SQ	SN:contig_3637_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_3638_pilon__uns	LN:567
skipping SAM header line:	@SQ	SN:contig_3639_pilon__uns	LN:822
skipping SAM header line:	@SQ	SN:contig_363_pilon__uns	LN:56351
skipping SAM header line:	@SQ	SN:contig_3640_pilon__uns	LN:43035
skipping SAM header line:	@SQ	SN:contig_3641_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_3643_pilon__uns	LN:15629
skipping SAM header line:	@SQ	SN:contig_3644_pilon__uns	LN:31686
skipping SAM header line:	@SQ	SN:contig_3648_pilon__uns	LN:584
skipping SAM header line:	@SQ	SN:contig_364_pilon__uns	LN:19907
skipping SAM header line:	@SQ	SN:contig_3657_pilon__uns	LN:2480
skipping SAM header line:	@SQ	SN:contig_3659_pilon__uns	LN:44926
skipping SAM header line:	@SQ	SN:contig_3660_pilon__uns	LN:5026
skipping SAM header line:	@SQ	SN:contig_3661_pilon__uns	LN:4450
skipping SAM header line:	@SQ	SN:contig_3665_pilon__uns	LN:799
skipping SAM header line:	@SQ	SN:contig_3667_pilon__uns	LN:2197
skipping SAM header line:	@SQ	SN:contig_3669_pilon__uns	LN:686
skipping SAM header line:	@SQ	SN:contig_3670_pilon__uns	LN:510
skipping SAM header line:	@SQ	SN:contig_3671_pilon__uns	LN:3665
skipping SAM header line:	@SQ	SN:contig_3672_pilon__uns	LN:11355
skipping SAM header line:	@SQ	SN:contig_3674_pilon__uns	LN:696
skipping SAM header line:	@SQ	SN:contig_3677_pilon__uns	LN:1942
skipping SAM header line:	@SQ	SN:contig_3678_pilon__uns	LN:1214
skipping SAM header line:	@SQ	SN:contig_3679_pilon__uns	LN:13597
skipping SAM header line:	@SQ	SN:contig_367_pilon__uns	LN:127737
skipping SAM header line:	@SQ	SN:contig_3680_pilon__uns	LN:507
skipping SAM header line:	@SQ	SN:contig_3682_pilon__uns	LN:1203
skipping SAM header line:	@SQ	SN:contig_3683_pilon__uns	LN:1123
skipping SAM header line:	@SQ	SN:contig_3684_pilon__uns	LN:1598
skipping SAM header line:	@SQ	SN:contig_3687_pilon__uns	LN:1061
skipping SAM header line:	@SQ	SN:contig_3689_pilon__uns	LN:10413
skipping SAM header line:	@SQ	SN:contig_3691_pilon__uns	LN:233
skipping SAM header line:	@SQ	SN:contig_3694_pilon__uns	LN:983
skipping SAM header line:	@SQ	SN:contig_3696_pilon__uns	LN:1514
skipping SAM header line:	@SQ	SN:contig_3704_pilon__uns	LN:279
skipping SAM header line:	@SQ	SN:contig_3705_pilon__uns	LN:612
skipping SAM header line:	@SQ	SN:contig_3707_pilon__uns	LN:315
skipping SAM header line:	@SQ	SN:contig_370_pilon__uns	LN:14427
skipping SAM header line:	@SQ	SN:contig_3711_pilon__uns	LN:1165
skipping SAM header line:	@SQ	SN:contig_3714_pilon__uns	LN:5864
skipping SAM header line:	@SQ	SN:contig_3715_pilon__uns	LN:1421
skipping SAM header line:	@SQ	SN:contig_3716_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_3719_pilon__uns	LN:1759
skipping SAM header line:	@SQ	SN:contig_3720_pilon__uns	LN:1428
skipping SAM header line:	@SQ	SN:contig_3723_pilon__uns	LN:22387
skipping SAM header line:	@SQ	SN:contig_3724_pilon__uns	LN:73450
skipping SAM header line:	@SQ	SN:contig_3725_pilon__uns	LN:492
skipping SAM header line:	@SQ	SN:contig_3726_pilon__uns	LN:2384
skipping SAM header line:	@SQ	SN:contig_3727_pilon__uns	LN:1029
skipping SAM header line:	@SQ	SN:contig_3728_pilon__uns	LN:25413
skipping SAM header line:	@SQ	SN:contig_372_pilon__uns	LN:157673
skipping SAM header line:	@SQ	SN:contig_3731_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_3732_pilon__uns	LN:57763
skipping SAM header line:	@SQ	SN:contig_3733_pilon__uns	LN:1689
skipping SAM header line:	@SQ	SN:contig_3734_pilon__uns	LN:2249
skipping SAM header line:	@SQ	SN:contig_3735_pilon__uns	LN:1958
skipping SAM header line:	@SQ	SN:contig_3736_pilon__uns	LN:4839
skipping SAM header line:	@SQ	SN:contig_3737_pilon__uns	LN:858
skipping SAM header line:	@SQ	SN:contig_3739_pilon__uns	LN:1386
skipping SAM header line:	@SQ	SN:contig_3740_pilon__uns	LN:4942
skipping SAM header line:	@SQ	SN:contig_3741_pilon__uns	LN:2920
skipping SAM header line:	@SQ	SN:contig_3742_pilon__uns	LN:1745
skipping SAM header line:	@SQ	SN:contig_3743_pilon__uns	LN:4763
skipping SAM header line:	@SQ	SN:contig_3746_pilon__uns	LN:1629
skipping SAM header line:	@SQ	SN:contig_3749_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_3750_pilon__uns	LN:426
skipping SAM header line:	@SQ	SN:contig_3753_pilon__uns	LN:1173
skipping SAM header line:	@SQ	SN:contig_3754_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_3755_pilon__uns	LN:1263
skipping SAM header line:	@SQ	SN:contig_3756_pilon__uns	LN:8369
skipping SAM header line:	@SQ	SN:contig_3758_pilon__uns	LN:18983
skipping SAM header line:	@SQ	SN:contig_3761_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_3763_pilon__uns	LN:2008
skipping SAM header line:	@SQ	SN:contig_3764_pilon__uns	LN:12152
skipping SAM header line:	@SQ	SN:contig_3765_pilon__uns	LN:42808
skipping SAM header line:	@SQ	SN:contig_3766_pilon__uns	LN:2227
skipping SAM header line:	@SQ	SN:contig_3770_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_3772_pilon__uns	LN:23436
skipping SAM header line:	@SQ	SN:contig_3773_pilon__uns	LN:1113
skipping SAM header line:	@SQ	SN:contig_3774_pilon__uns	LN:402
skipping SAM header line:	@SQ	SN:contig_3775_pilon__uns	LN:1196
skipping SAM header line:	@SQ	SN:contig_3776_pilon__uns	LN:1415
skipping SAM header line:	@SQ	SN:contig_3777_pilon__uns	LN:501
skipping SAM header line:	@SQ	SN:contig_3778_pilon__uns	LN:872
skipping SAM header line:	@SQ	SN:contig_3779_pilon__uns	LN:78302
skipping SAM header line:	@SQ	SN:contig_377_pilon__uns	LN:24607
skipping SAM header line:	@SQ	SN:contig_3780_pilon__uns	LN:15953
skipping SAM header line:	@SQ	SN:contig_3781_pilon__uns	LN:202064
skipping SAM header line:	@SQ	SN:contig_3782_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_3783_pilon__uns	LN:1545
skipping SAM header line:	@SQ	SN:contig_3784_pilon__uns	LN:27087
skipping SAM header line:	@SQ	SN:contig_3785_pilon__uns	LN:768
skipping SAM header line:	@SQ	SN:contig_3789_pilon__uns	LN:5655
skipping SAM header line:	@SQ	SN:contig_3790_pilon__uns	LN:654
skipping SAM header line:	@SQ	SN:contig_3791_pilon__uns	LN:1361
skipping SAM header line:	@SQ	SN:contig_3793_pilon__uns	LN:50121
skipping SAM header line:	@SQ	SN:contig_3794_pilon__uns	LN:987
skipping SAM header line:	@SQ	SN:contig_3797_pilon__uns	LN:2240
skipping SAM header line:	@SQ	SN:contig_3801_pilon__uns	LN:1987
skipping SAM header line:	@SQ	SN:contig_3804_pilon__uns	LN:997
skipping SAM header line:	@SQ	SN:contig_3805_pilon__uns	LN:2138
skipping SAM header line:	@SQ	SN:contig_3806_pilon__uns	LN:2907
skipping SAM header line:	@SQ	SN:contig_3809_pilon__uns	LN:813
skipping SAM header line:	@SQ	SN:contig_3811_pilon__uns	LN:1099
skipping SAM header line:	@SQ	SN:contig_3812_pilon__uns	LN:39563
skipping SAM header line:	@SQ	SN:contig_3814_pilon__uns	LN:24788
skipping SAM header line:	@SQ	SN:contig_3815_pilon__uns	LN:12615
skipping SAM header line:	@SQ	SN:contig_3818_pilon__uns	LN:4198
skipping SAM header line:	@SQ	SN:contig_3819_pilon__uns	LN:3391
skipping SAM header line:	@SQ	SN:contig_3824_pilon__uns	LN:16996
skipping SAM header line:	@SQ	SN:contig_3825_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_3826_pilon__uns	LN:1701
skipping SAM header line:	@SQ	SN:contig_3828_pilon__uns	LN:2465
skipping SAM header line:	@SQ	SN:contig_3829_pilon__uns	LN:2402
skipping SAM header line:	@SQ	SN:contig_382_pilon__uns	LN:89959
skipping SAM header line:	@SQ	SN:contig_3830_pilon__uns	LN:3712
skipping SAM header line:	@SQ	SN:contig_3832_pilon__uns	LN:104852
skipping SAM header line:	@SQ	SN:contig_3834_pilon__uns	LN:27327
skipping SAM header line:	@SQ	SN:contig_3835_pilon__uns	LN:1951
skipping SAM header line:	@SQ	SN:contig_3837_pilon__uns	LN:7878
skipping SAM header line:	@SQ	SN:contig_3838_pilon__uns	LN:2105
skipping SAM header line:	@SQ	SN:contig_3841_pilon__uns	LN:1285
skipping SAM header line:	@SQ	SN:contig_3843_pilon__uns	LN:1022
skipping SAM header line:	@SQ	SN:contig_3844_pilon__uns	LN:254
skipping SAM header line:	@SQ	SN:contig_3845_pilon__uns	LN:720
skipping SAM header line:	@SQ	SN:contig_3847_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_3849_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_3853_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_3855_pilon__uns	LN:554
skipping SAM header line:	@SQ	SN:contig_3856_pilon__uns	LN:2030
skipping SAM header line:	@SQ	SN:contig_3858_pilon__uns	LN:796
skipping SAM header line:	@SQ	SN:contig_3859_pilon__uns	LN:1122
skipping SAM header line:	@SQ	SN:contig_385_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_3860_pilon__uns	LN:1342
skipping SAM header line:	@SQ	SN:contig_3862_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3863_pilon__uns	LN:871
skipping SAM header line:	@SQ	SN:contig_3864_pilon__uns	LN:1510
skipping SAM header line:	@SQ	SN:contig_3866_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_3867_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_3869_pilon__uns	LN:1036
skipping SAM header line:	@SQ	SN:contig_3871_pilon__uns	LN:631
skipping SAM header line:	@SQ	SN:contig_3873_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_3876_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_3878_pilon__uns	LN:4230
skipping SAM header line:	@SQ	SN:contig_3881_pilon__uns	LN:1270
skipping SAM header line:	@SQ	SN:contig_3883_pilon__uns	LN:11381
skipping SAM header line:	@SQ	SN:contig_3884_pilon__uns	LN:1557
skipping SAM header line:	@SQ	SN:contig_3889_pilon__uns	LN:27275
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_1__uns	LN:237430
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_3__uns	LN:73001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_388_pilon___frag_5__uns	LN:135237
skipping SAM header line:	@SQ	SN:contig_3892_pilon__uns	LN:14424
skipping SAM header line:	@SQ	SN:contig_3896_pilon__uns	LN:558
skipping SAM header line:	@SQ	SN:contig_389_pilon__uns	LN:158705
skipping SAM header line:	@SQ	SN:contig_3905_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_390_pilon__uns	LN:23029
skipping SAM header line:	@SQ	SN:contig_3911_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_3912_pilon__uns	LN:11374
skipping SAM header line:	@SQ	SN:contig_3929_pilon__uns	LN:1815
skipping SAM header line:	@SQ	SN:contig_392_pilon__uns	LN:14492
skipping SAM header line:	@SQ	SN:contig_3938_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_3939_pilon__uns	LN:1114
skipping SAM header line:	@SQ	SN:contig_3941_pilon__uns	LN:503
skipping SAM header line:	@SQ	SN:contig_3947_pilon__uns	LN:579
skipping SAM header line:	@SQ	SN:contig_3952_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_3954_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_3958_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_3959_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_395_pilon__uns	LN:150415
skipping SAM header line:	@SQ	SN:contig_3960_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_3963_pilon__uns	LN:14275
skipping SAM header line:	@SQ	SN:contig_3964_pilon__uns	LN:18858
skipping SAM header line:	@SQ	SN:contig_3967_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_396_pilon__uns	LN:103814
skipping SAM header line:	@SQ	SN:contig_3981_pilon__uns	LN:12804
skipping SAM header line:	@SQ	SN:contig_3982_pilon__uns	LN:537
skipping SAM header line:	@SQ	SN:contig_3985_pilon__uns	LN:56993
skipping SAM header line:	@SQ	SN:contig_3987_pilon__uns	LN:776
skipping SAM header line:	@SQ	SN:contig_3989_pilon__uns	LN:8215
skipping SAM header line:	@SQ	SN:contig_3996_pilon__uns	LN:195368
skipping SAM header line:	@SQ	SN:contig_3997_pilon__uns	LN:216
skipping SAM header line:	@SQ	SN:contig_3998_pilon__uns	LN:602
skipping SAM header line:	@SQ	SN:contig_39_pilon__uns	LN:10916
skipping SAM header line:	@SQ	SN:contig_3_pilon__uns	LN:10510
skipping SAM header line:	@SQ	SN:contig_4000_pilon__uns	LN:14147
skipping SAM header line:	@SQ	SN:contig_4011_pilon__uns	LN:575
skipping SAM header line:	@SQ	SN:contig_4015_pilon__uns	LN:2903
skipping SAM header line:	@SQ	SN:contig_401_pilon__uns	LN:11163
skipping SAM header line:	@SQ	SN:contig_4034_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_4036_pilon__uns	LN:836
skipping SAM header line:	@SQ	SN:contig_4039_pilon__uns	LN:3506
skipping SAM header line:	@SQ	SN:contig_4042_pilon__uns	LN:10314
skipping SAM header line:	@SQ	SN:contig_4056_pilon__uns	LN:5933
skipping SAM header line:	@SQ	SN:contig_4067_pilon__uns	LN:205694
skipping SAM header line:	@SQ	SN:contig_4069_pilon__uns	LN:3935
skipping SAM header line:	@SQ	SN:contig_4074_pilon__uns	LN:5660
skipping SAM header line:	@SQ	SN:contig_407_pilon__uns	LN:35907
skipping SAM header line:	@SQ	SN:contig_4081_pilon__uns	LN:737
skipping SAM header line:	@SQ	SN:contig_4082_pilon__uns	LN:928
skipping SAM header line:	@SQ	SN:contig_4083_pilon__uns	LN:27688
skipping SAM header line:	@SQ	SN:contig_4089_pilon__uns	LN:1739
skipping SAM header line:	@SQ	SN:contig_4091_pilon__uns	LN:13450
skipping SAM header line:	@SQ	SN:contig_4092_pilon__uns	LN:6766
skipping SAM header line:	@SQ	SN:contig_40_pilon__uns	LN:8315
skipping SAM header line:	@SQ	SN:contig_4100_pilon__uns	LN:7980
skipping SAM header line:	@SQ	SN:contig_4105_pilon__uns	LN:20120
skipping SAM header line:	@SQ	SN:contig_4109_pilon__uns	LN:6193
skipping SAM header line:	@SQ	SN:contig_4111_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_4115_pilon__uns	LN:4803
skipping SAM header line:	@SQ	SN:contig_4118_pilon__uns	LN:6176
skipping SAM header line:	@SQ	SN:contig_4120_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4126_pilon__uns	LN:57632
skipping SAM header line:	@SQ	SN:contig_4132_pilon__uns	LN:23163
skipping SAM header line:	@SQ	SN:contig_4135_pilon__uns	LN:995
skipping SAM header line:	@SQ	SN:contig_4138_pilon__uns	LN:5293
skipping SAM header line:	@SQ	SN:contig_4139_pilon__uns	LN:5930
skipping SAM header line:	@SQ	SN:contig_4141_pilon__uns	LN:4414
skipping SAM header line:	@SQ	SN:contig_4148_pilon__uns	LN:2393
skipping SAM header line:	@SQ	SN:contig_414_pilon__uns	LN:226694
skipping SAM header line:	@SQ	SN:contig_4152_pilon__uns	LN:2682
skipping SAM header line:	@SQ	SN:contig_4157_pilon__uns	LN:84522
skipping SAM header line:	@SQ	SN:contig_415_pilon__uns	LN:6660
skipping SAM header line:	@SQ	SN:contig_4161_pilon__uns	LN:8311
skipping SAM header line:	@SQ	SN:contig_4163_pilon__uns	LN:2194
skipping SAM header line:	@SQ	SN:contig_4165_pilon__uns	LN:1743
skipping SAM header line:	@SQ	SN:contig_4169_pilon__uns	LN:49944
skipping SAM header line:	@SQ	SN:contig_4182_pilon__uns	LN:240319
skipping SAM header line:	@SQ	SN:contig_4188_pilon__uns	LN:8617
skipping SAM header line:	@SQ	SN:contig_4189_pilon__uns	LN:2558
skipping SAM header line:	@SQ	SN:contig_418_pilon__uns	LN:58668
skipping SAM header line:	@SQ	SN:contig_4192_pilon__uns	LN:30859
skipping SAM header line:	@SQ	SN:contig_4197_pilon__uns	LN:3951
skipping SAM header line:	@SQ	SN:contig_4202_pilon__uns	LN:5844
skipping SAM header line:	@SQ	SN:contig_4203_pilon__uns	LN:42289
skipping SAM header line:	@SQ	SN:contig_420_pilon__uns	LN:24873
skipping SAM header line:	@SQ	SN:contig_4212_pilon__uns	LN:292548
skipping SAM header line:	@SQ	SN:contig_4213_pilon__uns	LN:5307
skipping SAM header line:	@SQ	SN:contig_4217_pilon__uns	LN:16392
skipping SAM header line:	@SQ	SN:contig_421_pilon__uns	LN:20849
skipping SAM header line:	@SQ	SN:contig_4221_pilon__uns	LN:1478
skipping SAM header line:	@SQ	SN:contig_4224_pilon__uns	LN:11763
skipping SAM header line:	@SQ	SN:contig_4225_pilon__uns	LN:1985
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4226_pilon___frag_3__uns	LN:33010
skipping SAM header line:	@SQ	SN:contig_4227_pilon__uns	LN:34299
skipping SAM header line:	@SQ	SN:contig_4229_pilon__uns	LN:10050
skipping SAM header line:	@SQ	SN:contig_422_pilon__uns	LN:54879
skipping SAM header line:	@SQ	SN:contig_4231_pilon__uns	LN:4099
skipping SAM header line:	@SQ	SN:contig_4234_pilon__uns	LN:9652
skipping SAM header line:	@SQ	SN:contig_4237_pilon__uns	LN:1877
skipping SAM header line:	@SQ	SN:contig_423_pilon__uns	LN:21082
skipping SAM header line:	@SQ	SN:contig_4242_pilon__uns	LN:7754
skipping SAM header line:	@SQ	SN:contig_4244_pilon__uns	LN:5600
skipping SAM header line:	@SQ	SN:contig_4246_pilon__uns	LN:103767
skipping SAM header line:	@SQ	SN:contig_424_pilon__uns	LN:26297
skipping SAM header line:	@SQ	SN:contig_4256_pilon__uns	LN:27642
skipping SAM header line:	@SQ	SN:contig_4257_pilon__uns	LN:90525
skipping SAM header line:	@SQ	SN:contig_4261_pilon__uns	LN:14421
skipping SAM header line:	@SQ	SN:contig_4263_pilon__uns	LN:4250
skipping SAM header line:	@SQ	SN:contig_4267_pilon__uns	LN:168836
skipping SAM header line:	@SQ	SN:contig_4268_pilon__uns	LN:98293
skipping SAM header line:	@SQ	SN:contig_4270_pilon__uns	LN:18954
skipping SAM header line:	@SQ	SN:contig_4271_pilon__uns	LN:1919
skipping SAM header line:	@SQ	SN:contig_4272_pilon__uns	LN:2978
skipping SAM header line:	@SQ	SN:contig_4274_pilon__uns	LN:207802
skipping SAM header line:	@SQ	SN:contig_4280_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_4281_pilon__uns	LN:63691
skipping SAM header line:	@SQ	SN:contig_4285_pilon__uns	LN:23448
skipping SAM header line:	@SQ	SN:contig_4287_pilon__uns	LN:98631
skipping SAM header line:	@SQ	SN:contig_4291_pilon__uns	LN:23961
skipping SAM header line:	@SQ	SN:contig_4294_pilon__uns	LN:16223
skipping SAM header line:	@SQ	SN:contig_4295_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_4297_pilon__uns	LN:23543
skipping SAM header line:	@SQ	SN:contig_429_pilon__uns	LN:44290
skipping SAM header line:	@SQ	SN:contig_4301_pilon__uns	LN:5525
skipping SAM header line:	@SQ	SN:contig_4307_pilon__uns	LN:12749
skipping SAM header line:	@SQ	SN:contig_4314_pilon__uns	LN:481
skipping SAM header line:	@SQ	SN:contig_4319_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_4324_pilon__uns	LN:2330
skipping SAM header line:	@SQ	SN:contig_4326_pilon__uns	LN:14382
skipping SAM header line:	@SQ	SN:contig_4328_pilon__uns	LN:91484
skipping SAM header line:	@SQ	SN:contig_4335_pilon__uns	LN:154880
skipping SAM header line:	@SQ	SN:contig_4336_pilon__uns	LN:61379
skipping SAM header line:	@SQ	SN:contig_4340_pilon__uns	LN:4014
skipping SAM header line:	@SQ	SN:contig_4342_pilon__uns	LN:3439
skipping SAM header line:	@SQ	SN:contig_4345_pilon__uns	LN:35975
skipping SAM header line:	@SQ	SN:contig_4347_pilon__uns	LN:2311
skipping SAM header line:	@SQ	SN:contig_4350_pilon__uns	LN:7199
skipping SAM header line:	@SQ	SN:contig_4353_pilon__uns	LN:19416
skipping SAM header line:	@SQ	SN:contig_4356_pilon__uns	LN:35233
skipping SAM header line:	@SQ	SN:contig_435_pilon__uns	LN:24397
skipping SAM header line:	@SQ	SN:contig_4377_pilon__uns	LN:624
skipping SAM header line:	@SQ	SN:contig_4378_pilon__uns	LN:98197
skipping SAM header line:	@SQ	SN:contig_437_pilon__uns	LN:11035
skipping SAM header line:	@SQ	SN:contig_4380_pilon__uns	LN:28949
skipping SAM header line:	@SQ	SN:contig_4389_pilon__uns	LN:115908
skipping SAM header line:	@SQ	SN:contig_4391_pilon__uns	LN:4832
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_1__uns	LN:55376
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4392_pilon___frag_3__uns	LN:32250
skipping SAM header line:	@SQ	SN:contig_4394_pilon__uns	LN:55173
skipping SAM header line:	@SQ	SN:contig_4397_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_1__uns	LN:128389
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_3__uns	LN:18001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_4401_pilon___frag_5__uns	LN:104394
skipping SAM header line:	@SQ	SN:contig_4404_pilon__uns	LN:2633
skipping SAM header line:	@SQ	SN:contig_4406_pilon__uns	LN:79444
skipping SAM header line:	@SQ	SN:contig_4408_pilon__uns	LN:829
skipping SAM header line:	@SQ	SN:contig_440_pilon__uns	LN:166917
skipping SAM header line:	@SQ	SN:contig_4412_pilon__uns	LN:25487
skipping SAM header line:	@SQ	SN:contig_4413_pilon__uns	LN:58953
skipping SAM header line:	@SQ	SN:contig_4416_pilon__uns	LN:14793
skipping SAM header line:	@SQ	SN:contig_4424_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4426_pilon__uns	LN:3302
skipping SAM header line:	@SQ	SN:contig_4427_pilon__uns	LN:52525
skipping SAM header line:	@SQ	SN:contig_442_pilon__uns	LN:37193
skipping SAM header line:	@SQ	SN:contig_4435_pilon__uns	LN:42965
skipping SAM header line:	@SQ	SN:contig_4441_pilon__uns	LN:136249
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_1__uns	LN:21570
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_10___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_11__uns	LN:102466
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_3__uns	LN:21001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_4___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_5__uns	LN:22001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_6___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_7__uns	LN:36001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_8___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_1__uns	LN:22995
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_444_pilon___frag_9___frag_3__uns	LN:47150
skipping SAM header line:	@SQ	SN:contig_4451_pilon__uns	LN:20514
skipping SAM header line:	@SQ	SN:contig_4456_pilon__uns	LN:744
skipping SAM header line:	@SQ	SN:contig_4460_pilon__uns	LN:256227
skipping SAM header line:	@SQ	SN:contig_4464_pilon__uns	LN:53285
skipping SAM header line:	@SQ	SN:contig_4466_pilon__uns	LN:59881
skipping SAM header line:	@SQ	SN:contig_4468_pilon__uns	LN:219392
skipping SAM header line:	@SQ	SN:contig_4469_pilon__uns	LN:2751
skipping SAM header line:	@SQ	SN:contig_446_pilon__uns	LN:15341
skipping SAM header line:	@SQ	SN:contig_4471_pilon__uns	LN:16199
skipping SAM header line:	@SQ	SN:contig_4472_pilon__uns	LN:4344
skipping SAM header line:	@SQ	SN:contig_4480_pilon__uns	LN:62477
skipping SAM header line:	@SQ	SN:contig_4494_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_4496_pilon__uns	LN:512
skipping SAM header line:	@SQ	SN:contig_4506_pilon__uns	LN:144629
skipping SAM header line:	@SQ	SN:contig_4510_pilon__uns	LN:814
skipping SAM header line:	@SQ	SN:contig_4517_pilon__uns	LN:199088
skipping SAM header line:	@SQ	SN:contig_4519_pilon__uns	LN:160735
skipping SAM header line:	@SQ	SN:contig_4520_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4524_pilon__uns	LN:650
skipping SAM header line:	@SQ	SN:contig_4530_pilon__uns	LN:87169
skipping SAM header line:	@SQ	SN:contig_4535_pilon__uns	LN:494
skipping SAM header line:	@SQ	SN:contig_4539_pilon__uns	LN:28181
skipping SAM header line:	@SQ	SN:contig_453_pilon__uns	LN:1482
skipping SAM header line:	@SQ	SN:contig_4540_pilon__uns	LN:94444
skipping SAM header line:	@SQ	SN:contig_4554_pilon__uns	LN:1276
skipping SAM header line:	@SQ	SN:contig_456_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4570_pilon__uns	LN:117653
skipping SAM header line:	@SQ	SN:contig_4571_pilon__uns	LN:1359
skipping SAM header line:	@SQ	SN:contig_4583_pilon__uns	LN:12161
skipping SAM header line:	@SQ	SN:contig_4586_pilon__uns	LN:13415
skipping SAM header line:	@SQ	SN:contig_4588_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4602_pilon__uns	LN:24373
skipping SAM header line:	@SQ	SN:contig_4610_pilon__uns	LN:1569
skipping SAM header line:	@SQ	SN:contig_4618_pilon__uns	LN:163587
skipping SAM header line:	@SQ	SN:contig_4619_pilon__uns	LN:2103
skipping SAM header line:	@SQ	SN:contig_4623_pilon__uns	LN:57322
skipping SAM header line:	@SQ	SN:contig_4634_pilon__uns	LN:2321
skipping SAM header line:	@SQ	SN:contig_4636_pilon__uns	LN:1989
skipping SAM header line:	@SQ	SN:contig_4641_pilon__uns	LN:2303
skipping SAM header line:	@SQ	SN:contig_4643_pilon__uns	LN:22046
skipping SAM header line:	@SQ	SN:contig_4644_pilon__uns	LN:844
skipping SAM header line:	@SQ	SN:contig_4647_pilon__uns	LN:5675
skipping SAM header line:	@SQ	SN:contig_464_pilon__uns	LN:123656
skipping SAM header line:	@SQ	SN:contig_4663_pilon__uns	LN:119416
skipping SAM header line:	@SQ	SN:contig_4664_pilon__uns	LN:45920
skipping SAM header line:	@SQ	SN:contig_4667_pilon__uns	LN:82309
skipping SAM header line:	@SQ	SN:contig_4672_pilon__uns	LN:172258
skipping SAM header line:	@SQ	SN:contig_4678_pilon__uns	LN:51903
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_1__uns	LN:24015
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_3__uns	LN:32945
skipping SAM header line:	@SQ	SN:contig_4680_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4693_pilon__uns	LN:6416
skipping SAM header line:	@SQ	SN:contig_4707_pilon__uns	LN:70546
skipping SAM header line:	@SQ	SN:contig_4709_pilon__uns	LN:33590
skipping SAM header line:	@SQ	SN:contig_4718_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_4727_pilon__uns	LN:6347
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_1__uns	LN:101617
skipping SAM header line:	@SQ	SN:contig_4728_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_4731_pilon__uns	LN:10152
skipping SAM header line:	@SQ	SN:contig_4733_pilon__uns	LN:138293
skipping SAM header line:	@SQ	SN:contig_4741_pilon__uns	LN:30675
skipping SAM header line:	@SQ	SN:contig_4742_pilon__uns	LN:827
skipping SAM header line:	@SQ	SN:contig_4752_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_4757_pilon__uns	LN:89581
skipping SAM header line:	@SQ	SN:contig_4763_pilon__uns	LN:119212
skipping SAM header line:	@SQ	SN:contig_4765_pilon__uns	LN:662
skipping SAM header line:	@SQ	SN:contig_476_pilon__uns	LN:79115
skipping SAM header line:	@SQ	SN:contig_4771_pilon__uns	LN:144614
skipping SAM header line:	@SQ	SN:contig_4773_pilon__uns	LN:4885
skipping SAM header line:	@SQ	SN:contig_4774_pilon__uns	LN:515
skipping SAM header line:	@SQ	SN:contig_4779_pilon__uns	LN:28812
skipping SAM header line:	@SQ	SN:contig_477_pilon__uns	LN:39187
skipping SAM header line:	@SQ	SN:contig_4802_pilon__uns	LN:32128
skipping SAM header line:	@SQ	SN:contig_4803_pilon__uns	LN:66147
skipping SAM header line:	@SQ	SN:contig_4805_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_4809_pilon__uns	LN:7202
skipping SAM header line:	@SQ	SN:contig_480_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_4811_pilon__uns	LN:2905
skipping SAM header line:	@SQ	SN:contig_4812_pilon__uns	LN:3429
skipping SAM header line:	@SQ	SN:contig_4814_pilon__uns	LN:6209
skipping SAM header line:	@SQ	SN:contig_4820_pilon__uns	LN:6829
skipping SAM header line:	@SQ	SN:contig_4821_pilon__uns	LN:18367
skipping SAM header line:	@SQ	SN:contig_4829_pilon__uns	LN:947
skipping SAM header line:	@SQ	SN:contig_482_pilon__uns	LN:179811
skipping SAM header line:	@SQ	SN:contig_4830_pilon__uns	LN:3240
skipping SAM header line:	@SQ	SN:contig_4834_pilon__uns	LN:31766
skipping SAM header line:	@SQ	SN:contig_4843_pilon__uns	LN:376489
skipping SAM header line:	@SQ	SN:contig_4854_pilon__uns	LN:62177
skipping SAM header line:	@SQ	SN:contig_4859_pilon__uns	LN:28092
skipping SAM header line:	@SQ	SN:contig_485_pilon__uns	LN:71298
skipping SAM header line:	@SQ	SN:contig_486_pilon__uns	LN:80004
skipping SAM header line:	@SQ	SN:contig_4873_pilon__uns	LN:544
skipping SAM header line:	@SQ	SN:contig_4877_pilon__uns	LN:24718
skipping SAM header line:	@SQ	SN:contig_4888_pilon__uns	LN:3609
skipping SAM header line:	@SQ	SN:contig_4894_pilon__uns	LN:2076
skipping SAM header line:	@SQ	SN:contig_489_pilon__uns	LN:22784
skipping SAM header line:	@SQ	SN:contig_4904_pilon__uns	LN:4038
skipping SAM header line:	@SQ	SN:contig_4905_pilon__uns	LN:586
skipping SAM header line:	@SQ	SN:contig_4909_pilon__uns	LN:839
skipping SAM header line:	@SQ	SN:contig_4915_pilon__uns	LN:5315
skipping SAM header line:	@SQ	SN:contig_4919_pilon__uns	LN:3801
skipping SAM header line:	@SQ	SN:contig_4927_pilon__uns	LN:2369
skipping SAM header line:	@SQ	SN:contig_4929_pilon__uns	LN:835
skipping SAM header line:	@SQ	SN:contig_4936_pilon__uns	LN:52193
skipping SAM header line:	@SQ	SN:contig_4938_pilon__uns	LN:192080
skipping SAM header line:	@SQ	SN:contig_4941_pilon__uns	LN:4642
skipping SAM header line:	@SQ	SN:contig_4942_pilon__uns	LN:112700
skipping SAM header line:	@SQ	SN:contig_4944_pilon__uns	LN:23664
skipping SAM header line:	@SQ	SN:contig_4947_pilon__uns	LN:24962
skipping SAM header line:	@SQ	SN:contig_4950_pilon__uns	LN:60704
skipping SAM header line:	@SQ	SN:contig_4953_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_4955_pilon__uns	LN:93394
skipping SAM header line:	@SQ	SN:contig_4965_pilon__uns	LN:10423
skipping SAM header line:	@SQ	SN:contig_4966_pilon__uns	LN:56459
skipping SAM header line:	@SQ	SN:contig_4968_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_4970_pilon__uns	LN:22686
skipping SAM header line:	@SQ	SN:contig_4972_pilon__uns	LN:1638
skipping SAM header line:	@SQ	SN:contig_497_pilon__uns	LN:42043
skipping SAM header line:	@SQ	SN:contig_4996_pilon__uns	LN:5519
skipping SAM header line:	@SQ	SN:contig_4999_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_499_pilon__uns	LN:5025
skipping SAM header line:	@SQ	SN:contig_49_pilon__uns	LN:46608
skipping SAM header line:	@SQ	SN:contig_5002_pilon__uns	LN:94934
skipping SAM header line:	@SQ	SN:contig_5003_pilon__uns	LN:5721
skipping SAM header line:	@SQ	SN:contig_5007_pilon__uns	LN:790
skipping SAM header line:	@SQ	SN:contig_5014_pilon__uns	LN:83131
skipping SAM header line:	@SQ	SN:contig_5015_pilon__uns	LN:76564
skipping SAM header line:	@SQ	SN:contig_5018_pilon__uns	LN:809
skipping SAM header line:	@SQ	SN:contig_5019_pilon__uns	LN:4071
skipping SAM header line:	@SQ	SN:contig_5025_pilon__uns	LN:59756
skipping SAM header line:	@SQ	SN:contig_5029_pilon__uns	LN:11500
skipping SAM header line:	@SQ	SN:contig_5034_pilon__uns	LN:4351
skipping SAM header line:	@SQ	SN:contig_5036_pilon__uns	LN:4807
skipping SAM header line:	@SQ	SN:contig_5042_pilon__uns	LN:244490
skipping SAM header line:	@SQ	SN:contig_5043_pilon__uns	LN:716
skipping SAM header line:	@SQ	SN:contig_5049_pilon__uns	LN:731
skipping SAM header line:	@SQ	SN:contig_5053_pilon__uns	LN:12664
skipping SAM header line:	@SQ	SN:contig_5058_pilon__uns	LN:583
skipping SAM header line:	@SQ	SN:contig_5059_pilon__uns	LN:23397
skipping SAM header line:	@SQ	SN:contig_505_pilon__uns	LN:1654
skipping SAM header line:	@SQ	SN:contig_5065_pilon__uns	LN:31098
skipping SAM header line:	@SQ	SN:contig_5066_pilon__uns	LN:94498
skipping SAM header line:	@SQ	SN:contig_5070_pilon__uns	LN:122384
skipping SAM header line:	@SQ	SN:contig_5071_pilon__uns	LN:1139
skipping SAM header line:	@SQ	SN:contig_5074_pilon__uns	LN:2759
skipping SAM header line:	@SQ	SN:contig_5081_pilon__uns	LN:24613
skipping SAM header line:	@SQ	SN:contig_5082_pilon__uns	LN:6804
skipping SAM header line:	@SQ	SN:contig_5084_pilon__uns	LN:1484
skipping SAM header line:	@SQ	SN:contig_5090_pilon__uns	LN:64536
skipping SAM header line:	@SQ	SN:contig_5093_pilon__uns	LN:1642
skipping SAM header line:	@SQ	SN:contig_5099_pilon__uns	LN:88863
skipping SAM header line:	@SQ	SN:contig_50_pilon__uns	LN:180563
skipping SAM header line:	@SQ	SN:contig_5107_pilon__uns	LN:3615
skipping SAM header line:	@SQ	SN:contig_5112_pilon__uns	LN:33674
skipping SAM header line:	@SQ	SN:contig_5118_pilon__uns	LN:585
skipping SAM header line:	@SQ	SN:contig_5119_pilon__uns	LN:3834
skipping SAM header line:	@SQ	SN:contig_511_pilon__uns	LN:4140
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_1__uns	LN:196648
skipping SAM header line:	@SQ	SN:contig_5123_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5126_pilon__uns	LN:31139
skipping SAM header line:	@SQ	SN:contig_5127_pilon__uns	LN:122358
skipping SAM header line:	@SQ	SN:contig_5132_pilon__uns	LN:894
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_5135_pilon___frag_3__uns	LN:242641
skipping SAM header line:	@SQ	SN:contig_5138_pilon__uns	LN:5606
skipping SAM header line:	@SQ	SN:contig_5144_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_5149_pilon__uns	LN:21050
skipping SAM header line:	@SQ	SN:contig_514_pilon__uns	LN:67786
skipping SAM header line:	@SQ	SN:contig_5160_pilon__uns	LN:117768
skipping SAM header line:	@SQ	SN:contig_5162_pilon__uns	LN:3104
skipping SAM header line:	@SQ	SN:contig_5175_pilon__uns	LN:44872
skipping SAM header line:	@SQ	SN:contig_5176_pilon__uns	LN:550
skipping SAM header line:	@SQ	SN:contig_5178_pilon__uns	LN:51620
skipping SAM header line:	@SQ	SN:contig_5183_pilon__uns	LN:11102
skipping SAM header line:	@SQ	SN:contig_5190_pilon__uns	LN:257161
skipping SAM header line:	@SQ	SN:contig_5193_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_5195_pilon__uns	LN:4133
skipping SAM header line:	@SQ	SN:contig_5198_pilon__uns	LN:6755
skipping SAM header line:	@SQ	SN:contig_5211_pilon__uns	LN:121424
skipping SAM header line:	@SQ	SN:contig_5213_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5223_pilon__uns	LN:1984
skipping SAM header line:	@SQ	SN:contig_5226_pilon__uns	LN:150949
skipping SAM header line:	@SQ	SN:contig_522_pilon__uns	LN:5974
skipping SAM header line:	@SQ	SN:contig_5235_pilon__uns	LN:1723
skipping SAM header line:	@SQ	SN:contig_5236_pilon__uns	LN:49028
skipping SAM header line:	@SQ	SN:contig_5237_pilon__uns	LN:321
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_1__uns	LN:26878
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_523_pilon___frag_3__uns	LN:53134
skipping SAM header line:	@SQ	SN:contig_5244_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_5246_pilon__uns	LN:72901
skipping SAM header line:	@SQ	SN:contig_5250_pilon__uns	LN:6668
skipping SAM header line:	@SQ	SN:contig_5253_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_5257_pilon__uns	LN:1798
skipping SAM header line:	@SQ	SN:contig_5258_pilon__uns	LN:38282
skipping SAM header line:	@SQ	SN:contig_5259_pilon__uns	LN:895
skipping SAM header line:	@SQ	SN:contig_5262_pilon__uns	LN:6119
skipping SAM header line:	@SQ	SN:contig_5266_pilon__uns	LN:1321
skipping SAM header line:	@SQ	SN:contig_5272_pilon__uns	LN:3336
skipping SAM header line:	@SQ	SN:contig_5274_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_5276_pilon__uns	LN:54555
skipping SAM header line:	@SQ	SN:contig_5286_pilon__uns	LN:99766
skipping SAM header line:	@SQ	SN:contig_5295_pilon__uns	LN:129209
skipping SAM header line:	@SQ	SN:contig_5299_pilon__uns	LN:147086
skipping SAM header line:	@SQ	SN:contig_5306_pilon__uns	LN:681
skipping SAM header line:	@SQ	SN:contig_533_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5343_pilon__uns	LN:1378
skipping SAM header line:	@SQ	SN:contig_5345_pilon__uns	LN:6258
skipping SAM header line:	@SQ	SN:contig_5354_pilon__uns	LN:18613
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_1__uns	LN:101300
skipping SAM header line:	@SQ	SN:contig_5357_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_535_pilon__uns	LN:7848
skipping SAM header line:	@SQ	SN:contig_5363_pilon__uns	LN:77528
skipping SAM header line:	@SQ	SN:contig_5366_pilon__uns	LN:2543
skipping SAM header line:	@SQ	SN:contig_5373_pilon__uns	LN:39485
skipping SAM header line:	@SQ	SN:contig_5379_pilon__uns	LN:305079
skipping SAM header line:	@SQ	SN:contig_5388_pilon__uns	LN:39926
skipping SAM header line:	@SQ	SN:contig_5394_pilon__uns	LN:1669
skipping SAM header line:	@SQ	SN:contig_5397_pilon__uns	LN:5122
skipping SAM header line:	@SQ	SN:contig_5398_pilon__uns	LN:81776
skipping SAM header line:	@SQ	SN:contig_539_pilon__uns	LN:46889
skipping SAM header line:	@SQ	SN:contig_5408_pilon__uns	LN:11438
skipping SAM header line:	@SQ	SN:contig_5409_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_540_pilon__uns	LN:82795
skipping SAM header line:	@SQ	SN:contig_5411_pilon__uns	LN:324
skipping SAM header line:	@SQ	SN:contig_5412_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_5414_pilon__uns	LN:76913
skipping SAM header line:	@SQ	SN:contig_5415_pilon__uns	LN:109233
skipping SAM header line:	@SQ	SN:contig_5427_pilon__uns	LN:4598
skipping SAM header line:	@SQ	SN:contig_5431_pilon__uns	LN:4967
skipping SAM header line:	@SQ	SN:contig_5434_pilon__uns	LN:114223
skipping SAM header line:	@SQ	SN:contig_5436_pilon__uns	LN:21747
skipping SAM header line:	@SQ	SN:contig_5437_pilon__uns	LN:33222
skipping SAM header line:	@SQ	SN:contig_543_pilon__uns	LN:52447
skipping SAM header line:	@SQ	SN:contig_5443_pilon__uns	LN:3650
skipping SAM header line:	@SQ	SN:contig_5444_pilon__uns	LN:34386
skipping SAM header line:	@SQ	SN:contig_5446_pilon__uns	LN:43204
skipping SAM header line:	@SQ	SN:contig_5451_pilon__uns	LN:4049
skipping SAM header line:	@SQ	SN:contig_5456_pilon__uns	LN:596
skipping SAM header line:	@SQ	SN:contig_5458_pilon__uns	LN:12020
skipping SAM header line:	@SQ	SN:contig_5479_pilon__uns	LN:116642
skipping SAM header line:	@SQ	SN:contig_547_pilon__uns	LN:118856
skipping SAM header line:	@SQ	SN:contig_548_pilon__uns	LN:17798
skipping SAM header line:	@SQ	SN:contig_5493_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_5499_pilon__uns	LN:27751
skipping SAM header line:	@SQ	SN:contig_54_pilon__uns	LN:49657
skipping SAM header line:	@SQ	SN:contig_5504_pilon__uns	LN:1695
skipping SAM header line:	@SQ	SN:contig_5522_pilon__uns	LN:65556
skipping SAM header line:	@SQ	SN:contig_5526_pilon__uns	LN:71090
skipping SAM header line:	@SQ	SN:contig_5532_pilon__uns	LN:34374
skipping SAM header line:	@SQ	SN:contig_5533_pilon__uns	LN:3133
skipping SAM header line:	@SQ	SN:contig_5537_pilon__uns	LN:611
skipping SAM header line:	@SQ	SN:contig_5540_pilon__uns	LN:4720
skipping SAM header line:	@SQ	SN:contig_5562_pilon__uns	LN:5452
skipping SAM header line:	@SQ	SN:contig_5564_pilon__uns	LN:702
skipping SAM header line:	@SQ	SN:contig_5565_pilon__uns	LN:174561
skipping SAM header line:	@SQ	SN:contig_5571_pilon__uns	LN:106782
skipping SAM header line:	@SQ	SN:contig_5583_pilon__uns	LN:3138
skipping SAM header line:	@SQ	SN:contig_5586_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_5587_pilon__uns	LN:104032
skipping SAM header line:	@SQ	SN:contig_5589_pilon__uns	LN:24769
skipping SAM header line:	@SQ	SN:contig_5590_pilon__uns	LN:16952
skipping SAM header line:	@SQ	SN:contig_5593_pilon__uns	LN:6210
skipping SAM header line:	@SQ	SN:contig_5594_pilon__uns	LN:22206
skipping SAM header line:	@SQ	SN:contig_5596_pilon__uns	LN:107825
skipping SAM header line:	@SQ	SN:contig_5603_pilon__uns	LN:951
skipping SAM header line:	@SQ	SN:contig_5606_pilon__uns	LN:938
skipping SAM header line:	@SQ	SN:contig_5609_pilon__uns	LN:45291
skipping SAM header line:	@SQ	SN:contig_5620_pilon__uns	LN:10437
skipping SAM header line:	@SQ	SN:contig_5623_pilon__uns	LN:61354
skipping SAM header line:	@SQ	SN:contig_5630_pilon__uns	LN:27357
skipping SAM header line:	@SQ	SN:contig_5631_pilon__uns	LN:2496
skipping SAM header line:	@SQ	SN:contig_5634_pilon__uns	LN:56971
skipping SAM header line:	@SQ	SN:contig_5637_pilon__uns	LN:126125
skipping SAM header line:	@SQ	SN:contig_5641_pilon__uns	LN:750
skipping SAM header line:	@SQ	SN:contig_5645_pilon__uns	LN:2010
skipping SAM header line:	@SQ	SN:contig_5647_pilon__uns	LN:52228
skipping SAM header line:	@SQ	SN:contig_5649_pilon__uns	LN:5086
skipping SAM header line:	@SQ	SN:contig_564_pilon__uns	LN:18162
skipping SAM header line:	@SQ	SN:contig_5652_pilon__uns	LN:3617
skipping SAM header line:	@SQ	SN:contig_5653_pilon__uns	LN:693
skipping SAM header line:	@SQ	SN:contig_5656_pilon__uns	LN:9043
skipping SAM header line:	@SQ	SN:contig_5657_pilon__uns	LN:92710
skipping SAM header line:	@SQ	SN:contig_5658_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_5669_pilon__uns	LN:222
skipping SAM header line:	@SQ	SN:contig_5676_pilon__uns	LN:7689
skipping SAM header line:	@SQ	SN:contig_5678_pilon__uns	LN:6422
skipping SAM header line:	@SQ	SN:contig_5679_pilon__uns	LN:50216
skipping SAM header line:	@SQ	SN:contig_567_pilon__uns	LN:1351
skipping SAM header line:	@SQ	SN:contig_5681_pilon__uns	LN:4961
skipping SAM header line:	@SQ	SN:contig_5688_pilon__uns	LN:58831
skipping SAM header line:	@SQ	SN:contig_5689_pilon__uns	LN:11544
skipping SAM header line:	@SQ	SN:contig_5693_pilon__uns	LN:468
skipping SAM header line:	@SQ	SN:contig_5696_pilon__uns	LN:51080
skipping SAM header line:	@SQ	SN:contig_5706_pilon__uns	LN:618
skipping SAM header line:	@SQ	SN:contig_5708_pilon__uns	LN:32621
skipping SAM header line:	@SQ	SN:contig_5713_pilon__uns	LN:223466
skipping SAM header line:	@SQ	SN:contig_5714_pilon__uns	LN:76167
skipping SAM header line:	@SQ	SN:contig_5715_pilon__uns	LN:105358
skipping SAM header line:	@SQ	SN:contig_5717_pilon__uns	LN:38050
skipping SAM header line:	@SQ	SN:contig_5718_pilon__uns	LN:29234
skipping SAM header line:	@SQ	SN:contig_5719_pilon__uns	LN:2335
skipping SAM header line:	@SQ	SN:contig_5729_pilon__uns	LN:5345
skipping SAM header line:	@SQ	SN:contig_572_pilon__uns	LN:24910
skipping SAM header line:	@SQ	SN:contig_5736_pilon__uns	LN:77140
skipping SAM header line:	@SQ	SN:contig_5742_pilon__uns	LN:4619
skipping SAM header line:	@SQ	SN:contig_5746_pilon__uns	LN:102177
skipping SAM header line:	@SQ	SN:contig_5748_pilon__uns	LN:204842
skipping SAM header line:	@SQ	SN:contig_574_pilon__uns	LN:10892
skipping SAM header line:	@SQ	SN:contig_5751_pilon__uns	LN:14154
skipping SAM header line:	@SQ	SN:contig_5752_pilon__uns	LN:3408
skipping SAM header line:	@SQ	SN:contig_5756_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_5758_pilon__uns	LN:75221
skipping SAM header line:	@SQ	SN:contig_5765_pilon__uns	LN:116927
skipping SAM header line:	@SQ	SN:contig_5768_pilon__uns	LN:11798
skipping SAM header line:	@SQ	SN:contig_5773_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_5775_pilon__uns	LN:5339
skipping SAM header line:	@SQ	SN:contig_5777_pilon__uns	LN:2556
skipping SAM header line:	@SQ	SN:contig_5778_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_5782_pilon__uns	LN:14978
skipping SAM header line:	@SQ	SN:contig_5784_pilon__uns	LN:53594
skipping SAM header line:	@SQ	SN:contig_5791_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_5792_pilon__uns	LN:664
skipping SAM header line:	@SQ	SN:contig_5793_pilon__uns	LN:15568
skipping SAM header line:	@SQ	SN:contig_5794_pilon__uns	LN:1686
skipping SAM header line:	@SQ	SN:contig_5796_pilon__uns	LN:66966
skipping SAM header line:	@SQ	SN:contig_5799_pilon__uns	LN:25744
skipping SAM header line:	@SQ	SN:contig_579_pilon__uns	LN:5005
skipping SAM header line:	@SQ	SN:contig_5800_pilon__uns	LN:13249
skipping SAM header line:	@SQ	SN:contig_5801_pilon__uns	LN:9384
skipping SAM header line:	@SQ	SN:contig_5802_pilon__uns	LN:122422
skipping SAM header line:	@SQ	SN:contig_5803_pilon__uns	LN:23610
skipping SAM header line:	@SQ	SN:contig_580_pilon__uns	LN:847
skipping SAM header line:	@SQ	SN:contig_5812_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_5813_pilon__uns	LN:3327
skipping SAM header line:	@SQ	SN:contig_5818_pilon__uns	LN:15565
skipping SAM header line:	@SQ	SN:contig_5819_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_581_pilon__uns	LN:2643
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_1__uns	LN:43313
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_5824_pilon___frag_3__uns	LN:18760
skipping SAM header line:	@SQ	SN:contig_5825_pilon__uns	LN:4282
skipping SAM header line:	@SQ	SN:contig_5828_pilon__uns	LN:112721
skipping SAM header line:	@SQ	SN:contig_5829_pilon__uns	LN:100643
skipping SAM header line:	@SQ	SN:contig_5831_pilon__uns	LN:2144
skipping SAM header line:	@SQ	SN:contig_5833_pilon__uns	LN:99663
skipping SAM header line:	@SQ	SN:contig_5834_pilon__uns	LN:2355
skipping SAM header line:	@SQ	SN:contig_5835_pilon__uns	LN:429
skipping SAM header line:	@SQ	SN:contig_5844_pilon__uns	LN:45950
skipping SAM header line:	@SQ	SN:contig_5845_pilon__uns	LN:46947
skipping SAM header line:	@SQ	SN:contig_5846_pilon__uns	LN:70873
skipping SAM header line:	@SQ	SN:contig_5848_pilon__uns	LN:8228
skipping SAM header line:	@SQ	SN:contig_5849_pilon__uns	LN:57519
skipping SAM header line:	@SQ	SN:contig_5851_pilon__uns	LN:7026
skipping SAM header line:	@SQ	SN:contig_5854_pilon__uns	LN:78203
skipping SAM header line:	@SQ	SN:contig_5856_pilon__uns	LN:565
skipping SAM header line:	@SQ	SN:contig_5858_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_585_pilon__uns	LN:106065
skipping SAM header line:	@SQ	SN:contig_5861_pilon__uns	LN:3076
skipping SAM header line:	@SQ	SN:contig_5865_pilon__uns	LN:767
skipping SAM header line:	@SQ	SN:contig_5867_pilon__uns	LN:1843
skipping SAM header line:	@SQ	SN:contig_5873_pilon__uns	LN:93917
skipping SAM header line:	@SQ	SN:contig_5877_pilon__uns	LN:3886
skipping SAM header line:	@SQ	SN:contig_5878_pilon__uns	LN:902
skipping SAM header line:	@SQ	SN:contig_5883_pilon__uns	LN:4709
skipping SAM header line:	@SQ	SN:contig_5885_pilon__uns	LN:1502
skipping SAM header line:	@SQ	SN:contig_5886_pilon__uns	LN:724
skipping SAM header line:	@SQ	SN:contig_5889_pilon__uns	LN:7760
skipping SAM header line:	@SQ	SN:contig_5890_pilon__uns	LN:745
skipping SAM header line:	@SQ	SN:contig_5892_pilon__uns	LN:107109
skipping SAM header line:	@SQ	SN:contig_5894_pilon__uns	LN:40245
skipping SAM header line:	@SQ	SN:contig_5896_pilon__uns	LN:109296
skipping SAM header line:	@SQ	SN:contig_5897_pilon__uns	LN:3209
skipping SAM header line:	@SQ	SN:contig_5899_pilon__uns	LN:604
skipping SAM header line:	@SQ	SN:contig_58_pilon__uns	LN:45492
skipping SAM header line:	@SQ	SN:contig_5900_pilon__uns	LN:1907
skipping SAM header line:	@SQ	SN:contig_5904_pilon__uns	LN:20115
skipping SAM header line:	@SQ	SN:contig_5906_pilon__uns	LN:4044
skipping SAM header line:	@SQ	SN:contig_590_pilon__uns	LN:37829
skipping SAM header line:	@SQ	SN:contig_5911_pilon__uns	LN:431
skipping SAM header line:	@SQ	SN:contig_5914_pilon__uns	LN:1822
skipping SAM header line:	@SQ	SN:contig_5916_pilon__uns	LN:67259
skipping SAM header line:	@SQ	SN:contig_5918_pilon__uns	LN:67361
skipping SAM header line:	@SQ	SN:contig_5919_pilon__uns	LN:5308
skipping SAM header line:	@SQ	SN:contig_591_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_5923_pilon__uns	LN:6701
skipping SAM header line:	@SQ	SN:contig_5924_pilon__uns	LN:133566
skipping SAM header line:	@SQ	SN:contig_5926_pilon__uns	LN:2546
skipping SAM header line:	@SQ	SN:contig_5928_pilon__uns	LN:3105
skipping SAM header line:	@SQ	SN:contig_592_pilon__uns	LN:52641
skipping SAM header line:	@SQ	SN:contig_5931_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_5932_pilon__uns	LN:46758
skipping SAM header line:	@SQ	SN:contig_5937_pilon__uns	LN:151053
skipping SAM header line:	@SQ	SN:contig_5940_pilon__uns	LN:252515
skipping SAM header line:	@SQ	SN:contig_5942_pilon__uns	LN:2231
skipping SAM header line:	@SQ	SN:contig_5947_pilon__uns	LN:2356
skipping SAM header line:	@SQ	SN:contig_5948_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5958_pilon__uns	LN:1323
skipping SAM header line:	@SQ	SN:contig_5964_pilon__uns	LN:30040
skipping SAM header line:	@SQ	SN:contig_5967_pilon__uns	LN:1125
skipping SAM header line:	@SQ	SN:contig_596_pilon__uns	LN:3064
skipping SAM header line:	@SQ	SN:contig_5971_pilon__uns	LN:275285
skipping SAM header line:	@SQ	SN:contig_5974_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_5975_pilon__uns	LN:918
skipping SAM header line:	@SQ	SN:contig_5977_pilon__uns	LN:20272
skipping SAM header line:	@SQ	SN:contig_5981_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_5_pilon__uns	LN:2133
skipping SAM header line:	@SQ	SN:contig_6001_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_6003_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_6004_pilon__uns	LN:217
skipping SAM header line:	@SQ	SN:contig_600_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6024_pilon__uns	LN:5125
skipping SAM header line:	@SQ	SN:contig_6029_pilon__uns	LN:4022
skipping SAM header line:	@SQ	SN:contig_6030_pilon__uns	LN:5323
skipping SAM header line:	@SQ	SN:contig_6031_pilon__uns	LN:9984
skipping SAM header line:	@SQ	SN:contig_6034_pilon__uns	LN:432
skipping SAM header line:	@SQ	SN:contig_6036_pilon__uns	LN:2295
skipping SAM header line:	@SQ	SN:contig_6038_pilon__uns	LN:2729
skipping SAM header line:	@SQ	SN:contig_6040_pilon__uns	LN:68854
skipping SAM header line:	@SQ	SN:contig_6042_pilon__uns	LN:4312
skipping SAM header line:	@SQ	SN:contig_6047_pilon__uns	LN:6631
skipping SAM header line:	@SQ	SN:contig_6048_pilon__uns	LN:578
skipping SAM header line:	@SQ	SN:contig_6049_pilon__uns	LN:1470
skipping SAM header line:	@SQ	SN:contig_6051_pilon__uns	LN:1609
skipping SAM header line:	@SQ	SN:contig_6053_pilon__uns	LN:14756
skipping SAM header line:	@SQ	SN:contig_6054_pilon__uns	LN:1533
skipping SAM header line:	@SQ	SN:contig_6055_pilon__uns	LN:7254
skipping SAM header line:	@SQ	SN:contig_6059_pilon__uns	LN:1219
skipping SAM header line:	@SQ	SN:contig_6062_pilon__uns	LN:2775
skipping SAM header line:	@SQ	SN:contig_6063_pilon__uns	LN:43583
skipping SAM header line:	@SQ	SN:contig_6064_pilon__uns	LN:40366
skipping SAM header line:	@SQ	SN:contig_6068_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6069_pilon__uns	LN:470
skipping SAM header line:	@SQ	SN:contig_6071_pilon__uns	LN:2257
skipping SAM header line:	@SQ	SN:contig_6074_pilon__uns	LN:1786
skipping SAM header line:	@SQ	SN:contig_6075_pilon__uns	LN:3817
skipping SAM header line:	@SQ	SN:contig_6076_pilon__uns	LN:14788
skipping SAM header line:	@SQ	SN:contig_6078_pilon__uns	LN:913
skipping SAM header line:	@SQ	SN:contig_6079_pilon__uns	LN:1205
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_1__uns	LN:155950
skipping SAM header line:	@SQ	SN:contig_607_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6085_pilon__uns	LN:1158
skipping SAM header line:	@SQ	SN:contig_6087_pilon__uns	LN:17170
skipping SAM header line:	@SQ	SN:contig_6088_pilon__uns	LN:1000
skipping SAM header line:	@SQ	SN:contig_6092_pilon__uns	LN:40104
skipping SAM header line:	@SQ	SN:contig_6095_pilon__uns	LN:1809
skipping SAM header line:	@SQ	SN:contig_6096_pilon__uns	LN:5305
skipping SAM header line:	@SQ	SN:contig_6099_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_6101_pilon__uns	LN:7217
skipping SAM header line:	@SQ	SN:contig_6108_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_6109_pilon__uns	LN:706
skipping SAM header line:	@SQ	SN:contig_6110_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6115_pilon__uns	LN:1952
skipping SAM header line:	@SQ	SN:contig_6117_pilon__uns	LN:517
skipping SAM header line:	@SQ	SN:contig_6119_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_611_pilon__uns	LN:134846
skipping SAM header line:	@SQ	SN:contig_6121_pilon__uns	LN:61081
skipping SAM header line:	@SQ	SN:contig_6128_pilon__uns	LN:4289
skipping SAM header line:	@SQ	SN:contig_6131_pilon__uns	LN:4347
skipping SAM header line:	@SQ	SN:contig_6135_pilon__uns	LN:4955
skipping SAM header line:	@SQ	SN:contig_6136_pilon__uns	LN:110244
skipping SAM header line:	@SQ	SN:contig_6137_pilon__uns	LN:5640
skipping SAM header line:	@SQ	SN:contig_6139_pilon__uns	LN:4078
skipping SAM header line:	@SQ	SN:contig_613_pilon__uns	LN:648
skipping SAM header line:	@SQ	SN:contig_6143_pilon__uns	LN:8803
skipping SAM header line:	@SQ	SN:contig_6146_pilon__uns	LN:7251
skipping SAM header line:	@SQ	SN:contig_6147_pilon__uns	LN:1185
skipping SAM header line:	@SQ	SN:contig_614_pilon__uns	LN:2722
skipping SAM header line:	@SQ	SN:contig_6151_pilon__uns	LN:33636
skipping SAM header line:	@SQ	SN:contig_6154_pilon__uns	LN:15186
skipping SAM header line:	@SQ	SN:contig_6156_pilon__uns	LN:549
skipping SAM header line:	@SQ	SN:contig_6157_pilon__uns	LN:8382
skipping SAM header line:	@SQ	SN:contig_6162_pilon__uns	LN:1437
skipping SAM header line:	@SQ	SN:contig_6163_pilon__uns	LN:28520
skipping SAM header line:	@SQ	SN:contig_6164_pilon__uns	LN:5212
skipping SAM header line:	@SQ	SN:contig_6165_pilon__uns	LN:463
skipping SAM header line:	@SQ	SN:contig_6167_pilon__uns	LN:2000
skipping SAM header line:	@SQ	SN:contig_6168_pilon__uns	LN:2966
skipping SAM header line:	@SQ	SN:contig_6175_pilon__uns	LN:70660
skipping SAM header line:	@SQ	SN:contig_618_pilon__uns	LN:4725
skipping SAM header line:	@SQ	SN:contig_6190_pilon__uns	LN:991
skipping SAM header line:	@SQ	SN:contig_6194_pilon__uns	LN:707
skipping SAM header line:	@SQ	SN:contig_6195_pilon__uns	LN:2517
skipping SAM header line:	@SQ	SN:contig_6197_pilon__uns	LN:2789
skipping SAM header line:	@SQ	SN:contig_61_pilon__uns	LN:46704
skipping SAM header line:	@SQ	SN:contig_6202_pilon__uns	LN:580
skipping SAM header line:	@SQ	SN:contig_6206_pilon__uns	LN:4531
skipping SAM header line:	@SQ	SN:contig_620_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_6210_pilon__uns	LN:2238
skipping SAM header line:	@SQ	SN:contig_6212_pilon__uns	LN:2198
skipping SAM header line:	@SQ	SN:contig_6219_pilon__uns	LN:4189
skipping SAM header line:	@SQ	SN:contig_6224_pilon__uns	LN:7617
skipping SAM header line:	@SQ	SN:contig_6232_pilon__uns	LN:312
skipping SAM header line:	@SQ	SN:contig_623_pilon__uns	LN:14271
skipping SAM header line:	@SQ	SN:contig_6240_pilon__uns	LN:1795
skipping SAM header line:	@SQ	SN:contig_6242_pilon__uns	LN:1715
skipping SAM header line:	@SQ	SN:contig_6251_pilon__uns	LN:566
skipping SAM header line:	@SQ	SN:contig_6255_pilon__uns	LN:2237
skipping SAM header line:	@SQ	SN:contig_6256_pilon__uns	LN:1152
skipping SAM header line:	@SQ	SN:contig_6257_pilon__uns	LN:224
skipping SAM header line:	@SQ	SN:contig_6258_pilon__uns	LN:49002
skipping SAM header line:	@SQ	SN:contig_6259_pilon__uns	LN:489
skipping SAM header line:	@SQ	SN:contig_6260_pilon__uns	LN:2452
skipping SAM header line:	@SQ	SN:contig_6267_pilon__uns	LN:91820
skipping SAM header line:	@SQ	SN:contig_6269_pilon__uns	LN:26328
skipping SAM header line:	@SQ	SN:contig_626_pilon__uns	LN:27333
skipping SAM header line:	@SQ	SN:contig_6270_pilon__uns	LN:1890
skipping SAM header line:	@SQ	SN:contig_6272_pilon__uns	LN:1326
skipping SAM header line:	@SQ	SN:contig_6273_pilon__uns	LN:1483
skipping SAM header line:	@SQ	SN:contig_627_pilon__uns	LN:3452
skipping SAM header line:	@SQ	SN:contig_6282_pilon__uns	LN:1896
skipping SAM header line:	@SQ	SN:contig_6284_pilon__uns	LN:14920
skipping SAM header line:	@SQ	SN:contig_6289_pilon__uns	LN:3010
skipping SAM header line:	@SQ	SN:contig_6291_pilon__uns	LN:1488
skipping SAM header line:	@SQ	SN:contig_6293_pilon__uns	LN:2602
skipping SAM header line:	@SQ	SN:contig_6297_pilon__uns	LN:68764
skipping SAM header line:	@SQ	SN:contig_6298_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_62_pilon__uns	LN:54625
skipping SAM header line:	@SQ	SN:contig_6303_pilon__uns	LN:4039
skipping SAM header line:	@SQ	SN:contig_6313_pilon__uns	LN:49212
skipping SAM header line:	@SQ	SN:contig_6314_pilon__uns	LN:68895
skipping SAM header line:	@SQ	SN:contig_6322_pilon__uns	LN:634
skipping SAM header line:	@SQ	SN:contig_6323_pilon__uns	LN:7866
skipping SAM header line:	@SQ	SN:contig_6327_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_6334_pilon__uns	LN:41473
skipping SAM header line:	@SQ	SN:contig_6336_pilon__uns	LN:1775
skipping SAM header line:	@SQ	SN:contig_6338_pilon__uns	LN:1486
skipping SAM header line:	@SQ	SN:contig_633_pilon__uns	LN:330664
skipping SAM header line:	@SQ	SN:contig_6340_pilon__uns	LN:15845
skipping SAM header line:	@SQ	SN:contig_6347_pilon__uns	LN:19473
skipping SAM header line:	@SQ	SN:contig_6353_pilon__uns	LN:552
skipping SAM header line:	@SQ	SN:contig_6356_pilon__uns	LN:487
skipping SAM header line:	@SQ	SN:contig_6362_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_6363_pilon__uns	LN:161540
skipping SAM header line:	@SQ	SN:contig_6364_pilon__uns	LN:11937
skipping SAM header line:	@SQ	SN:contig_6365_pilon__uns	LN:39400
skipping SAM header line:	@SQ	SN:contig_6368_pilon__uns	LN:3279
skipping SAM header line:	@SQ	SN:contig_6369_pilon__uns	LN:1930
skipping SAM header line:	@SQ	SN:contig_6371_pilon__uns	LN:955
skipping SAM header line:	@SQ	SN:contig_6375_pilon__uns	LN:1356
skipping SAM header line:	@SQ	SN:contig_6377_pilon__uns	LN:780
skipping SAM header line:	@SQ	SN:contig_6385_pilon__uns	LN:1387
skipping SAM header line:	@SQ	SN:contig_6388_pilon__uns	LN:598
skipping SAM header line:	@SQ	SN:contig_6393_pilon__uns	LN:1959
skipping SAM header line:	@SQ	SN:contig_6402_pilon__uns	LN:1570
skipping SAM header line:	@SQ	SN:contig_6404_pilon__uns	LN:31797
skipping SAM header line:	@SQ	SN:contig_6405_pilon__uns	LN:3046
skipping SAM header line:	@SQ	SN:contig_6407_pilon__uns	LN:44017
skipping SAM header line:	@SQ	SN:contig_6408_pilon__uns	LN:40485
skipping SAM header line:	@SQ	SN:contig_6410_pilon__uns	LN:773
skipping SAM header line:	@SQ	SN:contig_6411_pilon__uns	LN:3284
skipping SAM header line:	@SQ	SN:contig_6413_pilon__uns	LN:4992
skipping SAM header line:	@SQ	SN:contig_6420_pilon__uns	LN:1093
skipping SAM header line:	@SQ	SN:contig_6425_pilon__uns	LN:7313
skipping SAM header line:	@SQ	SN:contig_6427_pilon__uns	LN:17357
skipping SAM header line:	@SQ	SN:contig_642_pilon__uns	LN:96367
skipping SAM header line:	@SQ	SN:contig_6430_pilon__uns	LN:82598
skipping SAM header line:	@SQ	SN:contig_6432_pilon__uns	LN:1137
skipping SAM header line:	@SQ	SN:contig_6434_pilon__uns	LN:3863
skipping SAM header line:	@SQ	SN:contig_6436_pilon__uns	LN:2214
skipping SAM header line:	@SQ	SN:contig_643_pilon__uns	LN:42254
skipping SAM header line:	@SQ	SN:contig_6440_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_6444_pilon__uns	LN:25884
skipping SAM header line:	@SQ	SN:contig_6445_pilon__uns	LN:19577
skipping SAM header line:	@SQ	SN:contig_6447_pilon__uns	LN:609
skipping SAM header line:	@SQ	SN:contig_6449_pilon__uns	LN:1007
skipping SAM header line:	@SQ	SN:contig_644_pilon__uns	LN:45218
skipping SAM header line:	@SQ	SN:contig_6451_pilon__uns	LN:4813
skipping SAM header line:	@SQ	SN:contig_6452_pilon__uns	LN:4692
skipping SAM header line:	@SQ	SN:contig_6459_pilon__uns	LN:1776
skipping SAM header line:	@SQ	SN:contig_6461_pilon__uns	LN:4682
skipping SAM header line:	@SQ	SN:contig_6462_pilon__uns	LN:8184
skipping SAM header line:	@SQ	SN:contig_6469_pilon__uns	LN:1299
skipping SAM header line:	@SQ	SN:contig_6470_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_6471_pilon__uns	LN:891
skipping SAM header line:	@SQ	SN:contig_6477_pilon__uns	LN:1681
skipping SAM header line:	@SQ	SN:contig_6479_pilon__uns	LN:4937
skipping SAM header line:	@SQ	SN:contig_6480_pilon__uns	LN:916
skipping SAM header line:	@SQ	SN:contig_6494_pilon__uns	LN:1145
skipping SAM header line:	@SQ	SN:contig_6496_pilon__uns	LN:1937
skipping SAM header line:	@SQ	SN:contig_6498_pilon__uns	LN:3267
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_64_pilon___frag_3__uns	LN:48597
skipping SAM header line:	@SQ	SN:contig_6501_pilon__uns	LN:1635
skipping SAM header line:	@SQ	SN:contig_6503_pilon__uns	LN:2410
skipping SAM header line:	@SQ	SN:contig_6505_pilon__uns	LN:1373
skipping SAM header line:	@SQ	SN:contig_6514_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_6515_pilon__uns	LN:1146
skipping SAM header line:	@SQ	SN:contig_6518_pilon__uns	LN:39163
skipping SAM header line:	@SQ	SN:contig_6529_pilon__uns	LN:8513
skipping SAM header line:	@SQ	SN:contig_652_pilon__uns	LN:22131
skipping SAM header line:	@SQ	SN:contig_6536_pilon__uns	LN:21283
skipping SAM header line:	@SQ	SN:contig_6537_pilon__uns	LN:513
skipping SAM header line:	@SQ	SN:contig_6540_pilon__uns	LN:2209
skipping SAM header line:	@SQ	SN:contig_6541_pilon__uns	LN:100062
skipping SAM header line:	@SQ	SN:contig_6544_pilon__uns	LN:1126
skipping SAM header line:	@SQ	SN:contig_6547_pilon__uns	LN:685
skipping SAM header line:	@SQ	SN:contig_6549_pilon__uns	LN:2118
skipping SAM header line:	@SQ	SN:contig_6551_pilon__uns	LN:134887
skipping SAM header line:	@SQ	SN:contig_655_pilon__uns	LN:779
skipping SAM header line:	@SQ	SN:contig_6562_pilon__uns	LN:139326
skipping SAM header line:	@SQ	SN:contig_6565_pilon__uns	LN:881
skipping SAM header line:	@SQ	SN:contig_6568_pilon__uns	LN:5316
skipping SAM header line:	@SQ	SN:contig_656_pilon__uns	LN:30227
skipping SAM header line:	@SQ	SN:contig_6576_pilon__uns	LN:10231
skipping SAM header line:	@SQ	SN:contig_6577_pilon__uns	LN:2098
skipping SAM header line:	@SQ	SN:contig_6579_pilon__uns	LN:379
skipping SAM header line:	@SQ	SN:contig_6581_pilon__uns	LN:50426
skipping SAM header line:	@SQ	SN:contig_6588_pilon__uns	LN:9989
skipping SAM header line:	@SQ	SN:contig_6590_pilon__uns	LN:5187
skipping SAM header line:	@SQ	SN:contig_6592_pilon__uns	LN:581
skipping SAM header line:	@SQ	SN:contig_6597_pilon__uns	LN:12122
skipping SAM header line:	@SQ	SN:contig_6606_pilon__uns	LN:673
skipping SAM header line:	@SQ	SN:contig_6609_pilon__uns	LN:1124
skipping SAM header line:	@SQ	SN:contig_6615_pilon__uns	LN:57129
skipping SAM header line:	@SQ	SN:contig_6617_pilon__uns	LN:1562
skipping SAM header line:	@SQ	SN:contig_6619_pilon__uns	LN:64971
skipping SAM header line:	@SQ	SN:contig_661_pilon__uns	LN:67949
skipping SAM header line:	@SQ	SN:contig_6622_pilon__uns	LN:35946
skipping SAM header line:	@SQ	SN:contig_6629_pilon__uns	LN:2137
skipping SAM header line:	@SQ	SN:contig_6630_pilon__uns	LN:4442
skipping SAM header line:	@SQ	SN:contig_6637_pilon__uns	LN:66106
skipping SAM header line:	@SQ	SN:contig_6638_pilon__uns	LN:992
skipping SAM header line:	@SQ	SN:contig_6647_pilon__uns	LN:4176
skipping SAM header line:	@SQ	SN:contig_6652_pilon__uns	LN:61069
skipping SAM header line:	@SQ	SN:contig_6657_pilon__uns	LN:506
skipping SAM header line:	@SQ	SN:contig_6660_pilon__uns	LN:457
skipping SAM header line:	@SQ	SN:contig_6661_pilon__uns	LN:990
skipping SAM header line:	@SQ	SN:contig_6664_pilon__uns	LN:2033
skipping SAM header line:	@SQ	SN:contig_6665_pilon__uns	LN:35338
skipping SAM header line:	@SQ	SN:contig_6667_pilon__uns	LN:207078
skipping SAM header line:	@SQ	SN:contig_6670_pilon__uns	LN:49329
skipping SAM header line:	@SQ	SN:contig_6671_pilon__uns	LN:1810
skipping SAM header line:	@SQ	SN:contig_6672_pilon__uns	LN:3166
skipping SAM header line:	@SQ	SN:contig_6673_pilon__uns	LN:2456
skipping SAM header line:	@SQ	SN:contig_6675_pilon__uns	LN:1003
skipping SAM header line:	@SQ	SN:contig_6677_pilon__uns	LN:1920
skipping SAM header line:	@SQ	SN:contig_6680_pilon__uns	LN:16586
skipping SAM header line:	@SQ	SN:contig_6683_pilon__uns	LN:3838
skipping SAM header line:	@SQ	SN:contig_6687_pilon__uns	LN:8573
skipping SAM header line:	@SQ	SN:contig_668_pilon__uns	LN:9405
skipping SAM header line:	@SQ	SN:contig_6697_pilon__uns	LN:5701
skipping SAM header line:	@SQ	SN:contig_6698_pilon__uns	LN:79361
skipping SAM header line:	@SQ	SN:contig_669_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_6701_pilon__uns	LN:1031
skipping SAM header line:	@SQ	SN:contig_6704_pilon__uns	LN:643
skipping SAM header line:	@SQ	SN:contig_6709_pilon__uns	LN:2446
skipping SAM header line:	@SQ	SN:contig_670_pilon__uns	LN:14837
skipping SAM header line:	@SQ	SN:contig_6715_pilon__uns	LN:5354
skipping SAM header line:	@SQ	SN:contig_6719_pilon__uns	LN:1892
skipping SAM header line:	@SQ	SN:contig_6721_pilon__uns	LN:14594
skipping SAM header line:	@SQ	SN:contig_6725_pilon__uns	LN:840
skipping SAM header line:	@SQ	SN:contig_6733_pilon__uns	LN:1628
skipping SAM header line:	@SQ	SN:contig_6735_pilon__uns	LN:733
skipping SAM header line:	@SQ	SN:contig_6739_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_6750_pilon__uns	LN:311232
skipping SAM header line:	@SQ	SN:contig_6753_pilon__uns	LN:308
skipping SAM header line:	@SQ	SN:contig_675_pilon__uns	LN:88740
skipping SAM header line:	@SQ	SN:contig_6760_pilon__uns	LN:1218
skipping SAM header line:	@SQ	SN:contig_6761_pilon__uns	LN:30162
skipping SAM header line:	@SQ	SN:contig_6764_pilon__uns	LN:146866
skipping SAM header line:	@SQ	SN:contig_6768_pilon__uns	LN:675
skipping SAM header line:	@SQ	SN:contig_6770_pilon__uns	LN:9965
skipping SAM header line:	@SQ	SN:contig_6772_pilon__uns	LN:645
skipping SAM header line:	@SQ	SN:contig_6779_pilon__uns	LN:49655
skipping SAM header line:	@SQ	SN:contig_6780_pilon__uns	LN:887
skipping SAM header line:	@SQ	SN:contig_6787_pilon__uns	LN:3896
skipping SAM header line:	@SQ	SN:contig_6793_pilon__uns	LN:1312
skipping SAM header line:	@SQ	SN:contig_6796_pilon__uns	LN:3627
skipping SAM header line:	@SQ	SN:contig_6799_pilon__uns	LN:1656
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_1__uns	LN:151716
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_679_pilon___frag_3__uns	LN:110217
skipping SAM header line:	@SQ	SN:contig_6802_pilon__uns	LN:29257
skipping SAM header line:	@SQ	SN:contig_6807_pilon__uns	LN:142355
skipping SAM header line:	@SQ	SN:contig_680_pilon__uns	LN:7332
skipping SAM header line:	@SQ	SN:contig_6811_pilon__uns	LN:5851
skipping SAM header line:	@SQ	SN:contig_6813_pilon__uns	LN:4770
skipping SAM header line:	@SQ	SN:contig_6822_pilon__uns	LN:93278
skipping SAM header line:	@SQ	SN:contig_6823_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_6824_pilon__uns	LN:14485
skipping SAM header line:	@SQ	SN:contig_6826_pilon__uns	LN:535
skipping SAM header line:	@SQ	SN:contig_6829_pilon__uns	LN:414
skipping SAM header line:	@SQ	SN:contig_6833_pilon__uns	LN:1296
skipping SAM header line:	@SQ	SN:contig_6836_pilon__uns	LN:2955
skipping SAM header line:	@SQ	SN:contig_6841_pilon__uns	LN:627
skipping SAM header line:	@SQ	SN:contig_6843_pilon__uns	LN:556
skipping SAM header line:	@SQ	SN:contig_6844_pilon__uns	LN:932
skipping SAM header line:	@SQ	SN:contig_6845_pilon__uns	LN:3503
skipping SAM header line:	@SQ	SN:contig_684_pilon__uns	LN:2634
skipping SAM header line:	@SQ	SN:contig_6855_pilon__uns	LN:888
skipping SAM header line:	@SQ	SN:contig_6858_pilon__uns	LN:2639
skipping SAM header line:	@SQ	SN:contig_6859_pilon__uns	LN:1190
skipping SAM header line:	@SQ	SN:contig_6860_pilon__uns	LN:37910
skipping SAM header line:	@SQ	SN:contig_6861_pilon__uns	LN:5823
skipping SAM header line:	@SQ	SN:contig_6865_pilon__uns	LN:11078
skipping SAM header line:	@SQ	SN:contig_6866_pilon__uns	LN:3743
skipping SAM header line:	@SQ	SN:contig_6869_pilon__uns	LN:9568
skipping SAM header line:	@SQ	SN:contig_686_pilon__uns	LN:75108
skipping SAM header line:	@SQ	SN:contig_6870_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6872_pilon__uns	LN:1805
skipping SAM header line:	@SQ	SN:contig_6875_pilon__uns	LN:845
skipping SAM header line:	@SQ	SN:contig_6876_pilon__uns	LN:101206
skipping SAM header line:	@SQ	SN:contig_6885_pilon__uns	LN:525
skipping SAM header line:	@SQ	SN:contig_6886_pilon__uns	LN:10454
skipping SAM header line:	@SQ	SN:contig_6891_pilon__uns	LN:22078
skipping SAM header line:	@SQ	SN:contig_6892_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_6897_pilon__uns	LN:7860
skipping SAM header line:	@SQ	SN:contig_6898_pilon__uns	LN:9711
skipping SAM header line:	@SQ	SN:contig_6899_pilon__uns	LN:1256
skipping SAM header line:	@SQ	SN:contig_689_pilon__uns	LN:8842
skipping SAM header line:	@SQ	SN:contig_6901_pilon__uns	LN:88361
skipping SAM header line:	@SQ	SN:contig_6905_pilon__uns	LN:11970
skipping SAM header line:	@SQ	SN:contig_6906_pilon__uns	LN:32253
skipping SAM header line:	@SQ	SN:contig_6913_pilon__uns	LN:112180
skipping SAM header line:	@SQ	SN:contig_6915_pilon__uns	LN:15319
skipping SAM header line:	@SQ	SN:contig_6916_pilon__uns	LN:35649
skipping SAM header line:	@SQ	SN:contig_6918_pilon__uns	LN:55057
skipping SAM header line:	@SQ	SN:contig_6919_pilon__uns	LN:864
skipping SAM header line:	@SQ	SN:contig_6921_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_6922_pilon__uns	LN:5073
skipping SAM header line:	@SQ	SN:contig_692_pilon__uns	LN:268446
skipping SAM header line:	@SQ	SN:contig_6932_pilon__uns	LN:190962
skipping SAM header line:	@SQ	SN:contig_6939_pilon__uns	LN:7350
skipping SAM header line:	@SQ	SN:contig_6949_pilon__uns	LN:2797
skipping SAM header line:	@SQ	SN:contig_6950_pilon__uns	LN:545
skipping SAM header line:	@SQ	SN:contig_6958_pilon__uns	LN:1685
skipping SAM header line:	@SQ	SN:contig_6959_pilon__uns	LN:801
skipping SAM header line:	@SQ	SN:contig_6966_pilon__uns	LN:842
skipping SAM header line:	@SQ	SN:contig_6967_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_6970_pilon__uns	LN:1649
skipping SAM header line:	@SQ	SN:contig_6974_pilon__uns	LN:4203
skipping SAM header line:	@SQ	SN:contig_6976_pilon__uns	LN:1731
skipping SAM header line:	@SQ	SN:contig_6979_pilon__uns	LN:10186
skipping SAM header line:	@SQ	SN:contig_6982_pilon__uns	LN:6141
skipping SAM header line:	@SQ	SN:contig_6983_pilon__uns	LN:2269
skipping SAM header line:	@SQ	SN:contig_6987_pilon__uns	LN:72055
skipping SAM header line:	@SQ	SN:contig_6998_pilon__uns	LN:825
skipping SAM header line:	@SQ	SN:contig_7001_pilon__uns	LN:4244
skipping SAM header line:	@SQ	SN:contig_7003_pilon__uns	LN:3324
skipping SAM header line:	@SQ	SN:contig_7004_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_7006_pilon__uns	LN:67105
skipping SAM header line:	@SQ	SN:contig_7008_pilon__uns	LN:2246
skipping SAM header line:	@SQ	SN:contig_7011_pilon__uns	LN:1388
skipping SAM header line:	@SQ	SN:contig_7013_pilon__uns	LN:98894
skipping SAM header line:	@SQ	SN:contig_701_pilon__uns	LN:1436
skipping SAM header line:	@SQ	SN:contig_7021_pilon__uns	LN:2573
skipping SAM header line:	@SQ	SN:contig_7023_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7027_pilon__uns	LN:10932
skipping SAM header line:	@SQ	SN:contig_7028_pilon__uns	LN:1526
skipping SAM header line:	@SQ	SN:contig_7029_pilon__uns	LN:351
skipping SAM header line:	@SQ	SN:contig_702_pilon__uns	LN:3929
skipping SAM header line:	@SQ	SN:contig_7031_pilon__uns	LN:21065
skipping SAM header line:	@SQ	SN:contig_7032_pilon__uns	LN:528
skipping SAM header line:	@SQ	SN:contig_7035_pilon__uns	LN:2130
skipping SAM header line:	@SQ	SN:contig_7044_pilon__uns	LN:211
skipping SAM header line:	@SQ	SN:contig_7052_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_7058_pilon__uns	LN:1961
skipping SAM header line:	@SQ	SN:contig_7064_pilon__uns	LN:43589
skipping SAM header line:	@SQ	SN:contig_7067_pilon__uns	LN:669
skipping SAM header line:	@SQ	SN:contig_7070_pilon__uns	LN:39062
skipping SAM header line:	@SQ	SN:contig_7074_pilon__uns	LN:39774
skipping SAM header line:	@SQ	SN:contig_7075_pilon__uns	LN:1069
skipping SAM header line:	@SQ	SN:contig_7076_pilon__uns	LN:34581
skipping SAM header line:	@SQ	SN:contig_7085_pilon__uns	LN:133480
skipping SAM header line:	@SQ	SN:contig_708_pilon__uns	LN:1032
skipping SAM header line:	@SQ	SN:contig_7090_pilon__uns	LN:150333
skipping SAM header line:	@SQ	SN:contig_7091_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_7094_pilon__uns	LN:8783
skipping SAM header line:	@SQ	SN:contig_709_pilon__uns	LN:860
skipping SAM header line:	@SQ	SN:contig_7105_pilon__uns	LN:1931
skipping SAM header line:	@SQ	SN:contig_7107_pilon__uns	LN:1661
skipping SAM header line:	@SQ	SN:contig_710_pilon__uns	LN:8447
skipping SAM header line:	@SQ	SN:contig_7110_pilon__uns	LN:24618
skipping SAM header line:	@SQ	SN:contig_7111_pilon__uns	LN:55941
skipping SAM header line:	@SQ	SN:contig_7112_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_711_pilon__uns	LN:8034
skipping SAM header line:	@SQ	SN:contig_7120_pilon__uns	LN:13544
skipping SAM header line:	@SQ	SN:contig_7127_pilon__uns	LN:79229
skipping SAM header line:	@SQ	SN:contig_7132_pilon__uns	LN:42623
skipping SAM header line:	@SQ	SN:contig_7133_pilon__uns	LN:51766
skipping SAM header line:	@SQ	SN:contig_7134_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7142_pilon__uns	LN:129148
skipping SAM header line:	@SQ	SN:contig_7144_pilon__uns	LN:83109
skipping SAM header line:	@SQ	SN:contig_7146_pilon__uns	LN:33994
skipping SAM header line:	@SQ	SN:contig_7151_pilon__uns	LN:1101
skipping SAM header line:	@SQ	SN:contig_7153_pilon__uns	LN:518
skipping SAM header line:	@SQ	SN:contig_715_pilon__uns	LN:33524
skipping SAM header line:	@SQ	SN:contig_7162_pilon__uns	LN:1307
skipping SAM header line:	@SQ	SN:contig_7165_pilon__uns	LN:1193
skipping SAM header line:	@SQ	SN:contig_7169_pilon__uns	LN:659
skipping SAM header line:	@SQ	SN:contig_716_pilon__uns	LN:11870
skipping SAM header line:	@SQ	SN:contig_7173_pilon__uns	LN:3762
skipping SAM header line:	@SQ	SN:contig_7174_pilon__uns	LN:90829
skipping SAM header line:	@SQ	SN:contig_7179_pilon__uns	LN:21004
skipping SAM header line:	@SQ	SN:contig_7180_pilon__uns	LN:9905
skipping SAM header line:	@SQ	SN:contig_7181_pilon__uns	LN:4076
skipping SAM header line:	@SQ	SN:contig_7184_pilon__uns	LN:71012
skipping SAM header line:	@SQ	SN:contig_718_pilon__uns	LN:35501
skipping SAM header line:	@SQ	SN:contig_7195_pilon__uns	LN:1453
skipping SAM header line:	@SQ	SN:contig_7201_pilon__uns	LN:9938
skipping SAM header line:	@SQ	SN:contig_7202_pilon__uns	LN:28252
skipping SAM header line:	@SQ	SN:contig_7208_pilon__uns	LN:4650
skipping SAM header line:	@SQ	SN:contig_720_pilon__uns	LN:1469
skipping SAM header line:	@SQ	SN:contig_7210_pilon__uns	LN:2225
skipping SAM header line:	@SQ	SN:contig_7213_pilon__uns	LN:59106
skipping SAM header line:	@SQ	SN:contig_7215_pilon__uns	LN:1818
skipping SAM header line:	@SQ	SN:contig_7219_pilon__uns	LN:674
skipping SAM header line:	@SQ	SN:contig_7221_pilon__uns	LN:7837
skipping SAM header line:	@SQ	SN:contig_7224_pilon__uns	LN:5722
skipping SAM header line:	@SQ	SN:contig_7230_pilon__uns	LN:5489
skipping SAM header line:	@SQ	SN:contig_7235_pilon__uns	LN:116013
skipping SAM header line:	@SQ	SN:contig_7236_pilon__uns	LN:1163
skipping SAM header line:	@SQ	SN:contig_7237_pilon__uns	LN:23244
skipping SAM header line:	@SQ	SN:contig_7239_pilon__uns	LN:1658
skipping SAM header line:	@SQ	SN:contig_7248_pilon__uns	LN:19403
skipping SAM header line:	@SQ	SN:contig_7250_pilon__uns	LN:683
skipping SAM header line:	@SQ	SN:contig_7255_pilon__uns	LN:28882
skipping SAM header line:	@SQ	SN:contig_7269_pilon__uns	LN:11930
skipping SAM header line:	@SQ	SN:contig_726_pilon__uns	LN:43230
skipping SAM header line:	@SQ	SN:contig_7272_pilon__uns	LN:72635
skipping SAM header line:	@SQ	SN:contig_7276_pilon__uns	LN:12871
skipping SAM header line:	@SQ	SN:contig_7278_pilon__uns	LN:2360
skipping SAM header line:	@SQ	SN:contig_7281_pilon__uns	LN:1801
skipping SAM header line:	@SQ	SN:contig_7286_pilon__uns	LN:3087
skipping SAM header line:	@SQ	SN:contig_7293_pilon__uns	LN:34230
skipping SAM header line:	@SQ	SN:contig_7294_pilon__uns	LN:23735
skipping SAM header line:	@SQ	SN:contig_7298_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_7299_pilon__uns	LN:691
skipping SAM header line:	@SQ	SN:contig_7303_pilon__uns	LN:4377
skipping SAM header line:	@SQ	SN:contig_7307_pilon__uns	LN:522
skipping SAM header line:	@SQ	SN:contig_7309_pilon__uns	LN:3094
skipping SAM header line:	@SQ	SN:contig_7314_pilon__uns	LN:8499
skipping SAM header line:	@SQ	SN:contig_7316_pilon__uns	LN:19404
skipping SAM header line:	@SQ	SN:contig_731_pilon__uns	LN:63761
skipping SAM header line:	@SQ	SN:contig_7321_pilon__uns	LN:174759
skipping SAM header line:	@SQ	SN:contig_7322_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7329_pilon__uns	LN:1997
skipping SAM header line:	@SQ	SN:contig_732_pilon__uns	LN:127135
skipping SAM header line:	@SQ	SN:contig_7330_pilon__uns	LN:6401
skipping SAM header line:	@SQ	SN:contig_7339_pilon__uns	LN:47300
skipping SAM header line:	@SQ	SN:contig_733_pilon__uns	LN:511
skipping SAM header line:	@SQ	SN:contig_7342_pilon__uns	LN:1217
skipping SAM header line:	@SQ	SN:contig_7343_pilon__uns	LN:6421
skipping SAM header line:	@SQ	SN:contig_7344_pilon__uns	LN:1567
skipping SAM header line:	@SQ	SN:contig_7345_pilon__uns	LN:1030
skipping SAM header line:	@SQ	SN:contig_7347_pilon__uns	LN:7899
skipping SAM header line:	@SQ	SN:contig_7350_pilon__uns	LN:27420
skipping SAM header line:	@SQ	SN:contig_7353_pilon__uns	LN:127147
skipping SAM header line:	@SQ	SN:contig_7354_pilon__uns	LN:1747
skipping SAM header line:	@SQ	SN:contig_7357_pilon__uns	LN:497
skipping SAM header line:	@SQ	SN:contig_7359_pilon__uns	LN:1172
skipping SAM header line:	@SQ	SN:contig_735_pilon__uns	LN:36842
skipping SAM header line:	@SQ	SN:contig_7361_pilon__uns	LN:885
skipping SAM header line:	@SQ	SN:contig_7365_pilon__uns	LN:954
skipping SAM header line:	@SQ	SN:contig_7366_pilon__uns	LN:1806
skipping SAM header line:	@SQ	SN:contig_7371_pilon__uns	LN:13364
skipping SAM header line:	@SQ	SN:contig_7373_pilon__uns	LN:56235
skipping SAM header line:	@SQ	SN:contig_7374_pilon__uns	LN:32978
skipping SAM header line:	@SQ	SN:contig_7378_pilon__uns	LN:139583
skipping SAM header line:	@SQ	SN:contig_7381_pilon__uns	LN:1044
skipping SAM header line:	@SQ	SN:contig_7384_pilon__uns	LN:27289
skipping SAM header line:	@SQ	SN:contig_7393_pilon__uns	LN:15605
skipping SAM header line:	@SQ	SN:contig_7397_pilon__uns	LN:19654
skipping SAM header line:	@SQ	SN:contig_7401_pilon__uns	LN:1011
skipping SAM header line:	@SQ	SN:contig_7408_pilon__uns	LN:13334
skipping SAM header line:	@SQ	SN:contig_7410_pilon__uns	LN:12072
skipping SAM header line:	@SQ	SN:contig_7412_pilon__uns	LN:62924
skipping SAM header line:	@SQ	SN:contig_7417_pilon__uns	LN:2614
skipping SAM header line:	@SQ	SN:contig_7418_pilon__uns	LN:51913
skipping SAM header line:	@SQ	SN:contig_7426_pilon__uns	LN:9753
skipping SAM header line:	@SQ	SN:contig_7428_pilon__uns	LN:87860
skipping SAM header line:	@SQ	SN:contig_7429_pilon__uns	LN:1384
skipping SAM header line:	@SQ	SN:contig_7430_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_7433_pilon__uns	LN:19142
skipping SAM header line:	@SQ	SN:contig_7434_pilon__uns	LN:2091
skipping SAM header line:	@SQ	SN:contig_7437_pilon__uns	LN:14948
skipping SAM header line:	@SQ	SN:contig_7439_pilon__uns	LN:37830
skipping SAM header line:	@SQ	SN:contig_743_pilon__uns	LN:6987
skipping SAM header line:	@SQ	SN:contig_7442_pilon__uns	LN:6265
skipping SAM header line:	@SQ	SN:contig_7443_pilon__uns	LN:2318
skipping SAM header line:	@SQ	SN:contig_7445_pilon__uns	LN:37229
skipping SAM header line:	@SQ	SN:contig_7446_pilon__uns	LN:49728
skipping SAM header line:	@SQ	SN:contig_7448_pilon__uns	LN:54959
skipping SAM header line:	@SQ	SN:contig_7449_pilon__uns	LN:542
skipping SAM header line:	@SQ	SN:contig_744_pilon__uns	LN:2902
skipping SAM header line:	@SQ	SN:contig_7450_pilon__uns	LN:363
skipping SAM header line:	@SQ	SN:contig_7453_pilon__uns	LN:593
skipping SAM header line:	@SQ	SN:contig_7456_pilon__uns	LN:17444
skipping SAM header line:	@SQ	SN:contig_7459_pilon__uns	LN:1403
skipping SAM header line:	@SQ	SN:contig_7464_pilon__uns	LN:165025
skipping SAM header line:	@SQ	SN:contig_7467_pilon__uns	LN:50487
skipping SAM header line:	@SQ	SN:contig_7474_pilon__uns	LN:996
skipping SAM header line:	@SQ	SN:contig_7476_pilon__uns	LN:1265
skipping SAM header line:	@SQ	SN:contig_7477_pilon__uns	LN:83534
skipping SAM header line:	@SQ	SN:contig_7481_pilon__uns	LN:838
skipping SAM header line:	@SQ	SN:contig_7484_pilon__uns	LN:15698
skipping SAM header line:	@SQ	SN:contig_7487_pilon__uns	LN:1846
skipping SAM header line:	@SQ	SN:contig_7500_pilon__uns	LN:53714
skipping SAM header line:	@SQ	SN:contig_7507_pilon__uns	LN:37832
skipping SAM header line:	@SQ	SN:contig_7509_pilon__uns	LN:1188
skipping SAM header line:	@SQ	SN:contig_750_pilon__uns	LN:69689
skipping SAM header line:	@SQ	SN:contig_7511_pilon__uns	LN:762
skipping SAM header line:	@SQ	SN:contig_7513_pilon__uns	LN:5365
skipping SAM header line:	@SQ	SN:contig_7521_pilon__uns	LN:11134
skipping SAM header line:	@SQ	SN:contig_7525_pilon__uns	LN:2066
skipping SAM header line:	@SQ	SN:contig_7527_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7528_pilon__uns	LN:559
skipping SAM header line:	@SQ	SN:contig_7531_pilon__uns	LN:560
skipping SAM header line:	@SQ	SN:contig_7533_pilon__uns	LN:2182
skipping SAM header line:	@SQ	SN:contig_7538_pilon__uns	LN:1593
skipping SAM header line:	@SQ	SN:contig_753_pilon__uns	LN:3897
skipping SAM header line:	@SQ	SN:contig_7540_pilon__uns	LN:811
skipping SAM header line:	@SQ	SN:contig_7545_pilon__uns	LN:2483
skipping SAM header line:	@SQ	SN:contig_7556_pilon__uns	LN:53102
skipping SAM header line:	@SQ	SN:contig_7560_pilon__uns	LN:40512
skipping SAM header line:	@SQ	SN:contig_7562_pilon__uns	LN:215
skipping SAM header line:	@SQ	SN:contig_7563_pilon__uns	LN:713
skipping SAM header line:	@SQ	SN:contig_7565_pilon__uns	LN:90528
skipping SAM header line:	@SQ	SN:contig_7569_pilon__uns	LN:8511
skipping SAM header line:	@SQ	SN:contig_756_pilon__uns	LN:48839
skipping SAM header line:	@SQ	SN:contig_7571_pilon__uns	LN:551
skipping SAM header line:	@SQ	SN:contig_7572_pilon__uns	LN:47023
skipping SAM header line:	@SQ	SN:contig_7574_pilon__uns	LN:246
skipping SAM header line:	@SQ	SN:contig_7575_pilon__uns	LN:3383
skipping SAM header line:	@SQ	SN:contig_7576_pilon__uns	LN:3831
skipping SAM header line:	@SQ	SN:contig_7577_pilon__uns	LN:8146
skipping SAM header line:	@SQ	SN:contig_7579_pilon__uns	LN:43397
skipping SAM header line:	@SQ	SN:contig_757_pilon__uns	LN:166044
skipping SAM header line:	@SQ	SN:contig_7582_pilon__uns	LN:11267
skipping SAM header line:	@SQ	SN:contig_7584_pilon__uns	LN:4632
skipping SAM header line:	@SQ	SN:contig_7586_pilon__uns	LN:3000
skipping SAM header line:	@SQ	SN:contig_7587_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_7589_pilon__uns	LN:1058
skipping SAM header line:	@SQ	SN:contig_758_pilon__uns	LN:25581
skipping SAM header line:	@SQ	SN:contig_7590_pilon__uns	LN:2794
skipping SAM header line:	@SQ	SN:contig_7591_pilon__uns	LN:3485
skipping SAM header line:	@SQ	SN:contig_7594_pilon__uns	LN:882
skipping SAM header line:	@SQ	SN:contig_7606_pilon__uns	LN:1519
skipping SAM header line:	@SQ	SN:contig_7607_pilon__uns	LN:49100
skipping SAM header line:	@SQ	SN:contig_7609_pilon__uns	LN:27912
skipping SAM header line:	@SQ	SN:contig_7610_pilon__uns	LN:701
skipping SAM header line:	@SQ	SN:contig_7611_pilon__uns	LN:5128
skipping SAM header line:	@SQ	SN:contig_7616_pilon__uns	LN:78600
skipping SAM header line:	@SQ	SN:contig_7619_pilon__uns	LN:2434
skipping SAM header line:	@SQ	SN:contig_7620_pilon__uns	LN:1769
skipping SAM header line:	@SQ	SN:contig_7621_pilon__uns	LN:5746
skipping SAM header line:	@SQ	SN:contig_7629_pilon__uns	LN:47076
skipping SAM header line:	@SQ	SN:contig_762_pilon__uns	LN:70088
skipping SAM header line:	@SQ	SN:contig_7632_pilon__uns	LN:3794
skipping SAM header line:	@SQ	SN:contig_7633_pilon__uns	LN:50352
skipping SAM header line:	@SQ	SN:contig_7643_pilon__uns	LN:12243
skipping SAM header line:	@SQ	SN:contig_7645_pilon__uns	LN:15435
skipping SAM header line:	@SQ	SN:contig_7649_pilon__uns	LN:4596
skipping SAM header line:	@SQ	SN:contig_7655_pilon__uns	LN:47185
skipping SAM header line:	@SQ	SN:contig_765_pilon__uns	LN:12179
skipping SAM header line:	@SQ	SN:contig_7662_pilon__uns	LN:7930
skipping SAM header line:	@SQ	SN:contig_7665_pilon__uns	LN:9751
skipping SAM header line:	@SQ	SN:contig_7668_pilon__uns	LN:8835
skipping SAM header line:	@SQ	SN:contig_7670_pilon__uns	LN:20847
skipping SAM header line:	@SQ	SN:contig_7672_pilon__uns	LN:5043
skipping SAM header line:	@SQ	SN:contig_7677_pilon__uns	LN:1831
skipping SAM header line:	@SQ	SN:contig_7683_pilon__uns	LN:2970
skipping SAM header line:	@SQ	SN:contig_7686_pilon__uns	LN:34122
skipping SAM header line:	@SQ	SN:contig_7687_pilon__uns	LN:25885
skipping SAM header line:	@SQ	SN:contig_7691_pilon__uns	LN:7125
skipping SAM header line:	@SQ	SN:contig_7696_pilon__uns	LN:3139
skipping SAM header line:	@SQ	SN:contig_7699_pilon__uns	LN:1056
skipping SAM header line:	@SQ	SN:contig_7701_pilon__uns	LN:1132
skipping SAM header line:	@SQ	SN:contig_7703_pilon__uns	LN:78557
skipping SAM header line:	@SQ	SN:contig_7708_pilon__uns	LN:55250
skipping SAM header line:	@SQ	SN:contig_7712_pilon__uns	LN:2024
skipping SAM header line:	@SQ	SN:contig_7713_pilon__uns	LN:11400
skipping SAM header line:	@SQ	SN:contig_7714_pilon__uns	LN:1057
skipping SAM header line:	@SQ	SN:contig_7732_pilon__uns	LN:1850
skipping SAM header line:	@SQ	SN:contig_7734_pilon__uns	LN:179759
skipping SAM header line:	@SQ	SN:contig_7735_pilon__uns	LN:689
skipping SAM header line:	@SQ	SN:contig_7737_pilon__uns	LN:30690
skipping SAM header line:	@SQ	SN:contig_7741_pilon__uns	LN:25085
skipping SAM header line:	@SQ	SN:contig_7742_pilon__uns	LN:11908
skipping SAM header line:	@SQ	SN:contig_7743_pilon__uns	LN:19573
skipping SAM header line:	@SQ	SN:contig_7754_pilon__uns	LN:8433
skipping SAM header line:	@SQ	SN:contig_7755_pilon__uns	LN:42949
skipping SAM header line:	@SQ	SN:contig_7756_pilon__uns	LN:824
skipping SAM header line:	@SQ	SN:contig_7762_pilon__uns	LN:44173
skipping SAM header line:	@SQ	SN:contig_7765_pilon__uns	LN:23510
skipping SAM header line:	@SQ	SN:contig_7767_pilon__uns	LN:24094
skipping SAM header line:	@SQ	SN:contig_7771_pilon__uns	LN:534
skipping SAM header line:	@SQ	SN:contig_7773_pilon__uns	LN:21793
skipping SAM header line:	@SQ	SN:contig_7774_pilon__uns	LN:12511
skipping SAM header line:	@SQ	SN:contig_777_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_7780_pilon__uns	LN:642
skipping SAM header line:	@SQ	SN:contig_7783_pilon__uns	LN:9954
skipping SAM header line:	@SQ	SN:contig_7784_pilon__uns	LN:2616
skipping SAM header line:	@SQ	SN:contig_7785_pilon__uns	LN:170967
skipping SAM header line:	@SQ	SN:contig_7792_pilon__uns	LN:13021
skipping SAM header line:	@SQ	SN:contig_7795_pilon__uns	LN:2068
skipping SAM header line:	@SQ	SN:contig_7801_pilon__uns	LN:617
skipping SAM header line:	@SQ	SN:contig_7805_pilon__uns	LN:815
skipping SAM header line:	@SQ	SN:contig_7814_pilon__uns	LN:47131
skipping SAM header line:	@SQ	SN:contig_7816_pilon__uns	LN:19530
skipping SAM header line:	@SQ	SN:contig_7818_pilon__uns	LN:2430
skipping SAM header line:	@SQ	SN:contig_7819_pilon__uns	LN:14077
skipping SAM header line:	@SQ	SN:contig_781_pilon__uns	LN:9344
skipping SAM header line:	@SQ	SN:contig_7822_pilon__uns	LN:27276
skipping SAM header line:	@SQ	SN:contig_7828_pilon__uns	LN:711
skipping SAM header line:	@SQ	SN:contig_7829_pilon__uns	LN:291328
skipping SAM header line:	@SQ	SN:contig_782_pilon__uns	LN:760
skipping SAM header line:	@SQ	SN:contig_7830_pilon__uns	LN:108953
skipping SAM header line:	@SQ	SN:contig_7836_pilon__uns	LN:795
skipping SAM header line:	@SQ	SN:contig_783_pilon__uns	LN:234756
skipping SAM header line:	@SQ	SN:contig_7840_pilon__uns	LN:10329
skipping SAM header line:	@SQ	SN:contig_7845_pilon__uns	LN:5649
skipping SAM header line:	@SQ	SN:contig_7846_pilon__uns	LN:13810
skipping SAM header line:	@SQ	SN:contig_7848_pilon__uns	LN:476
skipping SAM header line:	@SQ	SN:contig_7849_pilon__uns	LN:5637
skipping SAM header line:	@SQ	SN:contig_7863_pilon__uns	LN:5935
skipping SAM header line:	@SQ	SN:contig_7866_pilon__uns	LN:23609
skipping SAM header line:	@SQ	SN:contig_7867_pilon__uns	LN:89727
skipping SAM header line:	@SQ	SN:contig_786_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_7871_pilon__uns	LN:639
skipping SAM header line:	@SQ	SN:contig_7872_pilon__uns	LN:12065
skipping SAM header line:	@SQ	SN:contig_7873_pilon__uns	LN:1082
skipping SAM header line:	@SQ	SN:contig_7875_pilon__uns	LN:3310
skipping SAM header line:	@SQ	SN:contig_7879_pilon__uns	LN:2029
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_1__uns	LN:9589
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_3__uns	LN:24001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_4___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_787_pilon___frag_5__uns	LN:50139
skipping SAM header line:	@SQ	SN:contig_7880_pilon__uns	LN:30844
skipping SAM header line:	@SQ	SN:contig_7881_pilon__uns	LN:2153
skipping SAM header line:	@SQ	SN:contig_7884_pilon__uns	LN:1304
skipping SAM header line:	@SQ	SN:contig_7886_pilon__uns	LN:4435
skipping SAM header line:	@SQ	SN:contig_7890_pilon__uns	LN:8905
skipping SAM header line:	@SQ	SN:contig_7892_pilon__uns	LN:45436
skipping SAM header line:	@SQ	SN:contig_7893_pilon__uns	LN:771
skipping SAM header line:	@SQ	SN:contig_7894_pilon__uns	LN:82881
skipping SAM header line:	@SQ	SN:contig_7899_pilon__uns	LN:532
skipping SAM header line:	@SQ	SN:contig_7900_pilon__uns	LN:5786
skipping SAM header line:	@SQ	SN:contig_7906_pilon__uns	LN:2768
skipping SAM header line:	@SQ	SN:contig_7908_pilon__uns	LN:16993
skipping SAM header line:	@SQ	SN:contig_7917_pilon__uns	LN:519
skipping SAM header line:	@SQ	SN:contig_791_pilon__uns	LN:1953
skipping SAM header line:	@SQ	SN:contig_7928_pilon__uns	LN:24411
skipping SAM header line:	@SQ	SN:contig_7931_pilon__uns	LN:7750
skipping SAM header line:	@SQ	SN:contig_7932_pilon__uns	LN:616
skipping SAM header line:	@SQ	SN:contig_7935_pilon__uns	LN:6098
skipping SAM header line:	@SQ	SN:contig_7938_pilon__uns	LN:626
skipping SAM header line:	@SQ	SN:contig_7939_pilon__uns	LN:8080
skipping SAM header line:	@SQ	SN:contig_793_pilon__uns	LN:2570
skipping SAM header line:	@SQ	SN:contig_7940_pilon__uns	LN:782
skipping SAM header line:	@SQ	SN:contig_7947_pilon__uns	LN:69876
skipping SAM header line:	@SQ	SN:contig_7949_pilon__uns	LN:628
skipping SAM header line:	@SQ	SN:contig_7952_pilon__uns	LN:9227
skipping SAM header line:	@SQ	SN:contig_7955_pilon__uns	LN:1965
skipping SAM header line:	@SQ	SN:contig_7957_pilon__uns	LN:3043
skipping SAM header line:	@SQ	SN:contig_7958_pilon__uns	LN:804
skipping SAM header line:	@SQ	SN:contig_795_pilon__uns	LN:3242
skipping SAM header line:	@SQ	SN:contig_7963_pilon__uns	LN:2773
skipping SAM header line:	@SQ	SN:contig_7968_pilon__uns	LN:9134
skipping SAM header line:	@SQ	SN:contig_7969_pilon__uns	LN:11230
skipping SAM header line:	@SQ	SN:contig_7976_pilon__uns	LN:1975
skipping SAM header line:	@SQ	SN:contig_7977_pilon__uns	LN:600
skipping SAM header line:	@SQ	SN:contig_7980_pilon__uns	LN:1980
skipping SAM header line:	@SQ	SN:contig_7981_pilon__uns	LN:31818
skipping SAM header line:	@SQ	SN:contig_7983_pilon__uns	LN:13290
skipping SAM header line:	@SQ	SN:contig_7984_pilon__uns	LN:150825
skipping SAM header line:	@SQ	SN:contig_798_pilon__uns	LN:227830
skipping SAM header line:	@SQ	SN:contig_7997_pilon__uns	LN:684
skipping SAM header line:	@SQ	SN:contig_7999_pilon__uns	LN:38532
skipping SAM header line:	@SQ	SN:contig_79_pilon__uns	LN:43352
skipping SAM header line:	@SQ	SN:contig_8001_pilon__uns	LN:958
skipping SAM header line:	@SQ	SN:contig_8002_pilon__uns	LN:4582
skipping SAM header line:	@SQ	SN:contig_8011_pilon__uns	LN:597
skipping SAM header line:	@SQ	SN:contig_8012_pilon__uns	LN:3814
skipping SAM header line:	@SQ	SN:contig_8013_pilon__uns	LN:1215
skipping SAM header line:	@SQ	SN:contig_8018_pilon__uns	LN:670
skipping SAM header line:	@SQ	SN:contig_8020_pilon__uns	LN:7663
skipping SAM header line:	@SQ	SN:contig_8021_pilon__uns	LN:4816
skipping SAM header line:	@SQ	SN:contig_8024_pilon__uns	LN:493
skipping SAM header line:	@SQ	SN:contig_8025_pilon__uns	LN:53780
skipping SAM header line:	@SQ	SN:contig_8027_pilon__uns	LN:102026
skipping SAM header line:	@SQ	SN:contig_8028_pilon__uns	LN:4828
skipping SAM header line:	@SQ	SN:contig_8033_pilon__uns	LN:5247
skipping SAM header line:	@SQ	SN:contig_8034_pilon__uns	LN:2533
skipping SAM header line:	@SQ	SN:contig_8036_pilon__uns	LN:1096
skipping SAM header line:	@SQ	SN:contig_803_pilon__uns	LN:216696
skipping SAM header line:	@SQ	SN:contig_8041_pilon__uns	LN:5403
skipping SAM header line:	@SQ	SN:contig_8055_pilon__uns	LN:759
skipping SAM header line:	@SQ	SN:contig_8057_pilon__uns	LN:1100
skipping SAM header line:	@SQ	SN:contig_8059_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_8065_pilon__uns	LN:2436
skipping SAM header line:	@SQ	SN:contig_8070_pilon__uns	LN:65374
skipping SAM header line:	@SQ	SN:contig_8071_pilon__uns	LN:1411
skipping SAM header line:	@SQ	SN:contig_8076_pilon__uns	LN:16461
skipping SAM header line:	@SQ	SN:contig_8089_pilon__uns	LN:5108
skipping SAM header line:	@SQ	SN:contig_8090_pilon__uns	LN:704
skipping SAM header line:	@SQ	SN:contig_8093_pilon__uns	LN:46219
skipping SAM header line:	@SQ	SN:contig_8096_pilon__uns	LN:12502
skipping SAM header line:	@SQ	SN:contig_80_pilon__uns	LN:91059
skipping SAM header line:	@SQ	SN:contig_8100_pilon__uns	LN:619
skipping SAM header line:	@SQ	SN:contig_8101_pilon__uns	LN:40547
skipping SAM header line:	@SQ	SN:contig_8103_pilon__uns	LN:5346
skipping SAM header line:	@SQ	SN:contig_8105_pilon__uns	LN:136730
skipping SAM header line:	@SQ	SN:contig_8106_pilon__uns	LN:2093
skipping SAM header line:	@SQ	SN:contig_8121_pilon__uns	LN:482
skipping SAM header line:	@SQ	SN:contig_8129_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8131_pilon__uns	LN:16087
skipping SAM header line:	@SQ	SN:contig_8140_pilon__uns	LN:1102
skipping SAM header line:	@SQ	SN:contig_8141_pilon__uns	LN:502
skipping SAM header line:	@SQ	SN:contig_8145_pilon__uns	LN:20158
skipping SAM header line:	@SQ	SN:contig_8146_pilon__uns	LN:625
skipping SAM header line:	@SQ	SN:contig_8148_pilon__uns	LN:1802
skipping SAM header line:	@SQ	SN:contig_8150_pilon__uns	LN:498
skipping SAM header line:	@SQ	SN:contig_8153_pilon__uns	LN:3793
skipping SAM header line:	@SQ	SN:contig_8154_pilon__uns	LN:63970
skipping SAM header line:	@SQ	SN:contig_8157_pilon__uns	LN:1153
skipping SAM header line:	@SQ	SN:contig_8158_pilon__uns	LN:4993
skipping SAM header line:	@SQ	SN:contig_8162_pilon__uns	LN:9824
skipping SAM header line:	@SQ	SN:contig_8165_pilon__uns	LN:2346
skipping SAM header line:	@SQ	SN:contig_816_pilon__uns	LN:242892
skipping SAM header line:	@SQ	SN:contig_8170_pilon__uns	LN:1637
skipping SAM header line:	@SQ	SN:contig_8171_pilon__uns	LN:1088
skipping SAM header line:	@SQ	SN:contig_8172_pilon__uns	LN:1241
skipping SAM header line:	@SQ	SN:contig_8180_pilon__uns	LN:900
skipping SAM header line:	@SQ	SN:contig_8182_pilon__uns	LN:1313
skipping SAM header line:	@SQ	SN:contig_8183_pilon__uns	LN:11387
skipping SAM header line:	@SQ	SN:contig_8186_pilon__uns	LN:483
skipping SAM header line:	@SQ	SN:contig_8189_pilon__uns	LN:6075
skipping SAM header line:	@SQ	SN:contig_8192_pilon__uns	LN:1098
skipping SAM header line:	@SQ	SN:contig_8195_pilon__uns	LN:3599
skipping SAM header line:	@SQ	SN:contig_8198_pilon__uns	LN:504
skipping SAM header line:	@SQ	SN:contig_8202_pilon__uns	LN:7205
skipping SAM header line:	@SQ	SN:contig_8204_pilon__uns	LN:1179
skipping SAM header line:	@SQ	SN:contig_8206_pilon__uns	LN:6598
skipping SAM header line:	@SQ	SN:contig_8207_pilon__uns	LN:1150
skipping SAM header line:	@SQ	SN:contig_8212_pilon__uns	LN:9194
skipping SAM header line:	@SQ	SN:contig_8213_pilon__uns	LN:3380
skipping SAM header line:	@SQ	SN:contig_8217_pilon__uns	LN:876
skipping SAM header line:	@SQ	SN:contig_8219_pilon__uns	LN:4178
skipping SAM header line:	@SQ	SN:contig_8222_pilon__uns	LN:424
skipping SAM header line:	@SQ	SN:contig_8223_pilon__uns	LN:968
skipping SAM header line:	@SQ	SN:contig_8224_pilon__uns	LN:55660
skipping SAM header line:	@SQ	SN:contig_8225_pilon__uns	LN:10375
skipping SAM header line:	@SQ	SN:contig_8227_pilon__uns	LN:1045
skipping SAM header line:	@SQ	SN:contig_8228_pilon__uns	LN:5801
skipping SAM header line:	@SQ	SN:contig_8231_pilon__uns	LN:655
skipping SAM header line:	@SQ	SN:contig_8232_pilon__uns	LN:72277
skipping SAM header line:	@SQ	SN:contig_8233_pilon__uns	LN:9436
skipping SAM header line:	@SQ	SN:contig_8242_pilon__uns	LN:17300
skipping SAM header line:	@SQ	SN:contig_8251_pilon__uns	LN:1551
skipping SAM header line:	@SQ	SN:contig_8252_pilon__uns	LN:6619
skipping SAM header line:	@SQ	SN:contig_8253_pilon__uns	LN:1800
skipping SAM header line:	@SQ	SN:contig_8254_pilon___frag_2___debris__uns	LN:1001
skipping SAM header line:	@SQ	SN:contig_8257_pilon__uns	LN:1083
skipping SAM header line:	@SQ	SN:contig_8259_pilon__uns	LN:14377
skipping SAM header line:	@SQ	SN:contig_8260_pilon__uns	LN:1134
skipping SAM header line:	@SQ	SN:contig_8261_pilon__uns	LN:1621
skipping SAM header line:	@SQ	SN:contig_8262_pilon__uns	LN:58374
skipping SAM header line:	@SQ	SN:contig_8268_pilon__uns	LN:723
skipping SAM header line:	@SQ	SN:contig_8269_pilon__uns	LN:1763
skipping SAM header line:	@SQ	SN:contig_8272_pilon__uns	LN:925
skipping SAM header line:	@SQ	SN:contig_8277_pilon__uns	LN:564
skipping SAM header line:	@SQ	SN:contig_8278_pilon__uns	LN:546
skipping SAM header line:	@SQ	SN:contig_8280_pilon__uns	LN:695
skipping SAM header line:	@SQ	SN:contig_8286_pilon__uns	LN:1141
skipping SAM header line:	@SQ	SN:contig_8289_pilon__uns	LN:988
skipping SAM header line:	@SQ	SN:contig_8296_pilon__uns	LN:81906
skipping SAM header line:	@SQ	SN:contig_8298_pilon__uns	LN:1131
skipping SAM header line:	@SQ	SN:contig_8299_pilon__uns	LN:812
skipping SAM header line:	@SQ	SN:contig_8302_pilon__uns	LN:862
skipping SAM header line:	@SQ	SN:contig_8303_pilon__uns	LN:1005
skipping SAM header line:	@SQ	SN:contig_8305_pilon__uns	LN:1068
skipping SAM header line:	@SQ	SN:contig_8306_pilon__uns	LN:7296
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_1__uns	LN:77371
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_830_pilon___frag_3__uns	LN:70138
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_1__uns	LN:59872
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_8310_pilon___frag_3__uns	LN:44643
skipping SAM header line:	@SQ	SN:contig_8316_pilon__uns	LN:1156
skipping SAM header line:	@SQ	SN:contig_8317_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_8318_pilon__uns	LN:65318
skipping SAM header line:	@SQ	SN:contig_8321_pilon__uns	LN:5080
skipping SAM header line:	@SQ	SN:contig_8323_pilon__uns	LN:527
skipping SAM header line:	@SQ	SN:contig_8324_pilon__uns	LN:12317
skipping SAM header line:	@SQ	SN:contig_8327_pilon__uns	LN:6911
skipping SAM header line:	@SQ	SN:contig_8328_pilon__uns	LN:3016
skipping SAM header line:	@SQ	SN:contig_8347_pilon__uns	LN:741
skipping SAM header line:	@SQ	SN:contig_834_pilon__uns	LN:1063
skipping SAM header line:	@SQ	SN:contig_8362_pilon__uns	LN:96485
skipping SAM header line:	@SQ	SN:contig_8363_pilon__uns	LN:2548
skipping SAM header line:	@SQ	SN:contig_8375_pilon__uns	LN:1006
skipping SAM header line:	@SQ	SN:contig_8381_pilon__uns	LN:12593
skipping SAM header line:	@SQ	SN:contig_8383_pilon__uns	LN:3398
skipping SAM header line:	@SQ	SN:contig_8388_pilon__uns	LN:13651
skipping SAM header line:	@SQ	SN:contig_8398_pilon__uns	LN:11271
skipping SAM header line:	@SQ	SN:contig_8400_pilon__uns	LN:4188
skipping SAM header line:	@SQ	SN:contig_8405_pilon__uns	LN:79715
skipping SAM header line:	@SQ	SN:contig_8414_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8417_pilon__uns	LN:530
skipping SAM header line:	@SQ	SN:contig_8422_pilon__uns	LN:27518
skipping SAM header line:	@SQ	SN:contig_8434_pilon__uns	LN:78063
skipping SAM header line:	@SQ	SN:contig_8439_pilon__uns	LN:3573
skipping SAM header line:	@SQ	SN:contig_843_pilon__uns	LN:50289
skipping SAM header line:	@SQ	SN:contig_8450_pilon__uns	LN:3727
skipping SAM header line:	@SQ	SN:contig_8456_pilon__uns	LN:2396
skipping SAM header line:	@SQ	SN:contig_8462_pilon__uns	LN:5034
skipping SAM header line:	@SQ	SN:contig_846_pilon__uns	LN:80700
skipping SAM header line:	@SQ	SN:contig_8470_pilon__uns	LN:572
skipping SAM header line:	@SQ	SN:contig_8471_pilon__uns	LN:3020
skipping SAM header line:	@SQ	SN:contig_847_pilon__uns	LN:71338
skipping SAM header line:	@SQ	SN:contig_8489_pilon__uns	LN:13234
skipping SAM header line:	@SQ	SN:contig_848_pilon__uns	LN:70240
skipping SAM header line:	@SQ	SN:contig_8491_pilon__uns	LN:3201
skipping SAM header line:	@SQ	SN:contig_8492_pilon__uns	LN:2630
skipping SAM header line:	@SQ	SN:contig_8503_pilon__uns	LN:42080
skipping SAM header line:	@SQ	SN:contig_8509_pilon__uns	LN:16330
skipping SAM header line:	@SQ	SN:contig_850_pilon__uns	LN:32668
skipping SAM header line:	@SQ	SN:contig_8511_pilon__uns	LN:2081
skipping SAM header line:	@SQ	SN:contig_8514_pilon__uns	LN:1440
skipping SAM header line:	@SQ	SN:contig_851_pilon__uns	LN:36618
skipping SAM header line:	@SQ	SN:contig_8527_pilon__uns	LN:2770
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_1__uns	LN:82888
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:contig_852_pilon___frag_3__uns	LN:46458
skipping SAM header line:	@SQ	SN:contig_8530_pilon__uns	LN:2196
skipping SAM header line:	@SQ	SN:contig_8536_pilon__uns	LN:2567
skipping SAM header line:	@SQ	SN:contig_8543_pilon__uns	LN:2659
skipping SAM header line:	@SQ	SN:contig_8544_pilon__uns	LN:24320
skipping SAM header line:	@SQ	SN:contig_8546_pilon__uns	LN:20430
skipping SAM header line:	@SQ	SN:contig_8548_pilon__uns	LN:341
skipping SAM header line:	@SQ	SN:contig_8549_pilon__uns	LN:23276
skipping SAM header line:	@SQ	SN:contig_8550_pilon__uns	LN:48458
skipping SAM header line:	@SQ	SN:contig_855_pilon__uns	LN:17464
skipping SAM header line:	@SQ	SN:contig_8560_pilon__uns	LN:96554
skipping SAM header line:	@SQ	SN:contig_8570_pilon__uns	LN:13680
skipping SAM header line:	@SQ	SN:contig_8577_pilon__uns	LN:1350
skipping SAM header line:	@SQ	SN:contig_8595_pilon__uns	LN:10144
skipping SAM header line:	@SQ	SN:contig_8598_pilon__uns	LN:2135
skipping SAM header line:	@SQ	SN:contig_85_pilon__uns	LN:55958
skipping SAM header line:	@SQ	SN:contig_8601_pilon__uns	LN:2625
skipping SAM header line:	@SQ	SN:contig_8606_pilon__uns	LN:937
skipping SAM header line:	@SQ	SN:contig_8609_pilon__uns	LN:2912
skipping SAM header line:	@SQ	SN:contig_860_pilon__uns	LN:5975
skipping SAM header line:	@SQ	SN:contig_8610_pilon__uns	LN:3101
skipping SAM header line:	@SQ	SN:contig_8615_pilon__uns	LN:467
skipping SAM header line:	@SQ	SN:contig_8616_pilon__uns	LN:1722
skipping SAM header line:	@SQ	SN:contig_8617_pilon__uns	LN:73123
skipping SAM header line:	@SQ	SN:contig_8618_pilon__uns	LN:2087
skipping SAM header line:	@SQ	SN:contig_861_pilon__uns	LN:7439
skipping SAM header line:	@SQ	SN:contig_8620_pilon__uns	LN:1020
skipping SAM header line:	@SQ	SN:contig_8621_pilon__uns	LN:63859
skipping SAM header line:	@SQ	SN:contig_8624_pilon__uns	LN:8217
skipping SAM header line:	@SQ	SN:contig_8626_pilon__uns	LN:9308
skipping SAM header line:	@SQ	SN:contig_8628_pilon__uns	LN:4281
skipping SAM header line:	@SQ	SN:contig_8629_pilon__uns	LN:9078
skipping SAM header line:	@SQ	SN:contig_8633_pilon__uns	LN:4480
skipping SAM header line:	@SQ	SN:contig_8634_pilon__uns	LN:3444
skipping SAM header line:	@SQ	SN:contig_8642_pilon__uns	LN:758
skipping SAM header line:	@SQ	SN:contig_8647_pilon__uns	LN:1648
skipping SAM header line:	@SQ	SN:contig_8656_pilon__uns	LN:4419
skipping SAM header line:	@SQ	SN:contig_8658_pilon__uns	LN:2056
skipping SAM header line:	@SQ	SN:contig_865_pilon__uns	LN:3675
skipping SAM header line:	@SQ	SN:contig_8661_pilon__uns	LN:2426
skipping SAM header line:	@SQ	SN:contig_8665_pilon__uns	LN:120408
skipping SAM header line:	@SQ	SN:contig_8669_pilon__uns	LN:856
skipping SAM header line:	@SQ	SN:contig_8670_pilon__uns	LN:3216
skipping SAM header line:	@SQ	SN:contig_8671_pilon__uns	LN:901
skipping SAM header line:	@SQ	SN:contig_8673_pilon__uns	LN:3725
skipping SAM header line:	@SQ	SN:contig_8675_pilon__uns	LN:238
skipping SAM header line:	@SQ	SN:contig_8678_pilon__uns	LN:949
skipping SAM header line:	@SQ	SN:contig_867_pilon__uns	LN:3159
skipping SAM header line:	@SQ	SN:contig_8688_pilon__uns	LN:2641
skipping SAM header line:	@SQ	SN:contig_8689_pilon__uns	LN:12883
skipping SAM header line:	@SQ	SN:contig_868_pilon__uns	LN:4456
skipping SAM header line:	@SQ	SN:contig_8697_pilon__uns	LN:1318
skipping SAM header line:	@SQ	SN:contig_86_pilon__uns	LN:182895
skipping SAM header line:	@SQ	SN:contig_8703_pilon__uns	LN:2835
skipping SAM header line:	@SQ	SN:contig_8712_pilon__uns	LN:2435
skipping SAM header line:	@SQ	SN:contig_8718_pilon__uns	LN:4259
skipping SAM header line:	@SQ	SN:contig_8733_pilon__uns	LN:24751
skipping SAM header line:	@SQ	SN:contig_8737_pilon__uns	LN:1871
skipping SAM header line:	@SQ	SN:contig_873_pilon__uns	LN:33210
skipping SAM header line:	@SQ	SN:contig_8746_pilon__uns	LN:29296
skipping SAM header line:	@SQ	SN:contig_8751_pilon__uns	LN:3031
skipping SAM header line:	@SQ	SN:contig_8754_pilon__uns	LN:5949
skipping SAM header line:	@SQ	SN:contig_8761_pilon__uns	LN:2585
skipping SAM header line:	@SQ	SN:contig_8765_pilon__uns	LN:12506
skipping SAM header line:	@SQ	SN:contig_8769_pilon__uns	LN:924
skipping SAM header line:	@SQ	SN:contig_8774_pilon__uns	LN:892
skipping SAM header line:	@SQ	SN:contig_878_pilon__uns	LN:4009
skipping SAM header line:	@SQ	SN:contig_883_pilon__uns	LN:15642
skipping SAM header line:	@SQ	SN:contig_888_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_891_pilon__uns	LN:94943
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_1__uns	LN:26501
skipping SAM header line:	@SQ	SN:contig_898_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_899_pilon__uns	LN:46917
skipping SAM header line:	@SQ	SN:contig_902_pilon__uns	LN:740
skipping SAM header line:	@SQ	SN:contig_909_pilon__uns	LN:1612
skipping SAM header line:	@SQ	SN:contig_913_pilon__uns	LN:2294
skipping SAM header line:	@SQ	SN:contig_917_pilon__uns	LN:9339
skipping SAM header line:	@SQ	SN:contig_91_pilon__uns	LN:36317
skipping SAM header line:	@SQ	SN:contig_928_pilon__uns	LN:1431
skipping SAM header line:	@SQ	SN:contig_932_pilon__uns	LN:55711
skipping SAM header line:	@SQ	SN:contig_933_pilon__uns	LN:10616
skipping SAM header line:	@SQ	SN:contig_941_pilon__uns	LN:27219
skipping SAM header line:	@SQ	SN:contig_949_pilon__uns	LN:15576
skipping SAM header line:	@SQ	SN:contig_951_pilon__uns	LN:70592
skipping SAM header line:	@SQ	SN:contig_953_pilon__uns	LN:78497
skipping SAM header line:	@SQ	SN:contig_957_pilon___frag_2___debris__uns	LN:3001
skipping SAM header line:	@SQ	SN:contig_958_pilon__uns	LN:50155
skipping SAM header line:	@SQ	SN:contig_959_pilon__uns	LN:15123
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_1__uns	LN:61407
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_3__uns	LN:136001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_4___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_961_pilon___frag_5__uns	LN:49432
skipping SAM header line:	@SQ	SN:contig_967_pilon__uns	LN:33718
skipping SAM header line:	@SQ	SN:contig_969_pilon__uns	LN:5031
skipping SAM header line:	@SQ	SN:contig_970_pilon__uns	LN:2987
skipping SAM header line:	@SQ	SN:contig_973_pilon__uns	LN:738
skipping SAM header line:	@SQ	SN:contig_975_pilon__uns	LN:1394
skipping SAM header line:	@SQ	SN:contig_980_pilon___frag_2___debris__uns	LN:5001
skipping SAM header line:	@SQ	SN:contig_988_pilon__uns	LN:1201
skipping SAM header line:	@SQ	SN:contig_989_pilon__uns	LN:2782
skipping SAM header line:	@SQ	SN:contig_991_pilon__uns	LN:38039
skipping SAM header line:	@SQ	SN:contig_992_pilon__uns	LN:30809
skipping SAM header line:	@SQ	SN:scaffold_11_pilon__uns	LN:261324
skipping SAM header line:	@SQ	SN:scaffold_4415_pilon__uns	LN:144318
skipping SAM header line:	@SQ	SN:scaffold_546_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_1__uns	LN:36977
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_2___debris__uns	LN:2001
skipping SAM header line:	@SQ	SN:scaffold_5852_pilon___frag_3__uns	LN:64971
skipping SAM header line:	@SQ	SN:scaffold_6472_pilon__uns	LN:101702
skipping SAM header line:	@SQ	SN:scaffold_7122_pilon__uns	LN:288074
skipping SAM header line:	@SQ	SN:scaffold_75_pilon__uns	LN:171814
skipping SAM header line:	@PG	ID:Bismark	VN:v0.21.0	CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/ -genome /gscratch/srlab/sr320/data/dumoar/sc-con-genome/ -u 40000 -p 40 -score_min L,0,-0.6 -1 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R1_001_val_1.fq.gz -2 /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R2_001_val_2.fq.gz"
Finished processing child process. Exiting..
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Now waiting for all child processes to complete

Merging individual splitting reports into overall report: 'CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt'
Merging from these individual files:
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28


Processed 9689 lines in total
Total number of methylation call strings processed: 19378

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	156490

Total methylated C's in CpG context:	14276
Total methylated C's in CHG context:	926
Total methylated C's in CHH context:	19115

Total C to T conversions in CpG context:	6869
Total C to T conversions in CHG context:	27534
Total C to T conversions in CHH context:	87770

C methylated in CpG context:	67.5%
C methylated in non-CpG context:	14.8%



Merging individual M-bias reports into overall M-bias statistics from these 28 individual files:
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.1.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.2.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.3.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.4.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.5.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.6.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.7.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.8.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.9.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.10.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.11.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.12.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.13.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.14.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.15.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.16.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.17.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.18.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.19.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.20.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.21.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.22.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.23.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.24.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.25.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.26.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.27.mbias
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt.28.mbias

Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Determining maximum read lengths for M-Bias plots
Maximum read length of Read 1: 131
Maximum read length of Read 2: 131

Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table)
Deleting unused files ...

CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept
Non_CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt contains data ->	kept


Using these input files: CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt Non_CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Summary of parameters for bismark2bedGraph conversion:
======================================================
bedGraph output:		CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
output directory:		><
remove whitespaces:		no
CX context:			no (CpG context only, default)
No-header selected:		no
Sorting method:			Unix sort-based (smaller memory footprint, but slower)
Sort buffer size:		75%
Coverage threshold:		1
=============================================================================
Methylation information will now be written into a bedGraph and coverage file
=============================================================================

Using the following files as Input:
/gscratch/scrubbed/sr320/031223-scont-17/CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt

Writing bedGraph to file: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bedGraph.gz
Also writing out a coverage file including counts methylated and unmethylated residues to file: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bismark.cov.gz

The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Sorting everything in memory instead of writing out individual chromosome files ...
Sorting input file CpG_context_CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.txt by positions (using -S of 75%)
Finished BedGraph conversion ...

Found 20 alignment reports in current directory. Now trying to figure out whether there are corresponding optional reports

Writing Bismark HTML report to >> CH01_06_S1_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH01_06_S1_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH01_06_S1_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH01_14_S2_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH01_14_S2_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH01_14_S2_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH01_22_S3_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH01_22_S3_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH01_22_S3_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH01_38_S4_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH01_38_S4_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH01_38_S4_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH03_04_S5_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH03_04_S5_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH03_04_S5_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH03_15_S6_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH03_15_S6_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH03_15_S6_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH03_33_S7_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH03_33_S7_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH03_33_S7_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH05_01_S8_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH05_01_S8_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH05_01_S8_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH05_06_S9_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH05_06_S9_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH05_06_S9_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH05_21_S10_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH05_21_S10_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH05_21_S10_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH05_24_S11_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH05_24_S11_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH05_24_S11_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH07_06_S12_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH07_06_S12_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH07_06_S12_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH07_11_S13_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH07_11_S13_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH07_11_S13_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH07_24_S14_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH07_24_S14_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH07_24_S14_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH09_02_S15_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH09_02_S15_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH09_02_S15_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH09_13_S16_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH09_13_S16_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH09_13_S16_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH09_28_S17_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH09_28_S17_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH09_28_S17_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH10_01_S18_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH10_01_S18_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH10_01_S18_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH10_08_S19_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH10_08_S19_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH10_08_S19_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================



Writing Bismark HTML report to >> CH10_11_S20_L001_R1_001_val_1_bismark_bt2_PE_report.html <<

==============================================================================================================
Using the following alignment report:		> CH10_11_S20_L001_R1_001_val_1_bismark_bt2_PE_report.txt <
Processing alignment report CH10_11_S20_L001_R1_001_val_1_bismark_bt2_PE_report.txt ...
Complete

Using the following deduplication report:	> CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt <
Processing deduplication report CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt ...
Complete

Using the following splitting report:		> CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt <
Processing splitting report CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt ...
Complete

Using the following M-bias report:		> CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt <
Processing M-bias report CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt ...
Complete

No nucleotide coverage report file specified, skipping this step
==============================================================================================================


No Bismark/Bowtie2 single-end BAM files detected
Found Bismark/Bowtie2 paired-end files
No Bismark/HISAT2 single-end BAM files detected
No Bismark/HISAT2 paired-end BAM files detected

Generating Bismark summary report from 20 Bismark BAM file(s)...
>> Reading from Bismark report: CH01_06_S1_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH01_14_S2_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH01_22_S3_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH01_38_S4_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH03_04_S5_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH03_15_S6_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH03_33_S7_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH05_01_S8_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH05_06_S9_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH05_21_S10_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH05_24_S11_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH07_06_S12_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH07_11_S13_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH07_24_S14_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH09_02_S15_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH09_13_S16_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH09_28_S17_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH10_01_S18_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH10_08_S19_L001_R1_001_val_1_bismark_bt2_PE_report.txt
>> Reading from Bismark report: CH10_11_S20_L001_R1_001_val_1_bismark_bt2_PE_report.txt

Wrote Bismark project summary to >> bismark_summary_report.html <<