File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11352	24337	4311	0	1949	9403	179179	22701	7637	918	35353	14826	97744
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10979	23540	5481	0	2084	8895	141457	14151	6550	742	25198	15699	79117
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11729	23562	4707	2	2018	9711	182739	18478	8999	854	34747	15981	103680
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11180	23867	4953	0	1924	9256	149033	14798	6930	910	27509	18031	80855
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	8111	24346	7542	1	1072	7039	105194	1486	10447	666	13065	34756	44774
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7785	26800	5415	0	1398	6387	114939	3252	11177	600	17471	22662	59777
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11131	25146	3723	0	2072	9059	187195	23336	8110	993	37492	14028	103236
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10099	23201	6700	0	1525	8574	130337	8091	7654	883	20771	32774	60164
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7390	27436	5174	0	1311	6079	124680	1234	13675	498	19563	17320	72390
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11495	23734	4771	0	2286	9209	169414	14989	8249	954	31237	24580	89405
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	12164	22303	5532	1	2173	9991	162790	18731	7011	1112	31200	23942	80794
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10961	24453	4586	0	1980	8981	169440	17444	8691	974	31410	19195	91726
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7412	27584	5004	0	1381	6031	118963	1288	12459	647	18232	16731	69606
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	8339	25093	6567	1	1326	7013	133881	1114	12338	526	17626	18067	84210
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11652	22565	5783	0	1950	9702	151562	14751	6771	1005	25820	22570	80645
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11972	22519	5509	0	2071	9901	201611	11079	11112	969	32341	24318	121792
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11389	24502	4109	0	2109	9280	171591	17396	7951	1308	32623	18733	93580
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11687	23634	4679	0	1857	9830	171157	18504	7053	1126	32427	18515	93532
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	9606	24178	6216	0	1369	8237	130801	4800	9837	948	19172	36225	59819
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11697	22940	5363	0	2008	9689	156490	14276	6869	926	27534	19115	87770