CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 173 102 62.91 275 2 200 100 66.67 300 3 169 82 67.33 251 4 192 87 68.82 279 5 200 90 68.97 290 6 183 87 67.78 270 7 172 84 67.19 256 8 170 89 65.64 259 9 174 84 67.44 258 10 185 85 68.52 270 11 184 87 67.90 271 12 174 90 65.91 264 13 221 95 69.94 316 14 182 80 69.47 262 15 232 83 73.65 315 16 183 80 69.58 263 17 198 94 67.81 292 18 221 78 73.91 299 19 193 87 68.93 280 20 192 80 70.59 272 21 207 87 70.41 294 22 207 99 67.65 306 23 199 86 69.82 285 24 229 85 72.93 314 25 201 76 72.56 277 26 192 86 69.06 278 27 202 80 71.63 282 28 178 74 70.63 252 29 191 97 66.32 288 30 176 78 69.29 254 31 193 86 69.18 279 32 178 90 66.42 268 33 182 90 66.91 272 34 195 85 69.64 280 35 173 88 66.28 261 36 199 86 69.82 285 37 168 77 68.57 245 38 176 74 70.40 250 39 179 61 74.58 240 40 187 93 66.79 280 41 179 78 69.65 257 42 178 78 69.53 256 43 158 77 67.23 235 44 157 75 67.67 232 45 166 70 70.34 236 46 139 68 67.15 207 47 148 75 66.37 223 48 161 60 72.85 221 49 136 76 64.15 212 50 139 60 69.85 199 51 105 57 64.81 162 52 139 67 67.48 206 53 150 53 73.89 203 54 157 66 70.40 223 55 135 57 70.31 192 56 139 59 70.20 198 57 128 63 67.02 191 58 91 65 58.33 156 59 122 43 73.94 165 60 105 51 67.31 156 61 108 43 71.52 151 62 120 58 67.42 178 63 106 48 68.83 154 64 112 56 66.67 168 65 110 50 68.75 160 66 119 44 73.01 163 67 94 43 68.61 137 68 90 40 69.23 130 69 86 44 66.15 130 70 99 53 65.13 152 71 75 36 67.57 111 72 88 31 73.95 119 73 87 42 67.44 129 74 81 42 65.85 123 75 69 32 68.32 101 76 85 38 69.11 123 77 87 35 71.31 122 78 63 41 60.58 104 79 74 30 71.15 104 80 79 39 66.95 118 81 59 31 65.56 90 82 42 34 55.26 76 83 64 24 72.73 88 84 57 39 59.38 96 85 58 27 68.24 85 86 56 29 65.88 85 87 47 24 66.20 71 88 49 19 72.06 68 89 48 30 61.54 78 90 48 25 65.75 73 91 57 32 64.04 89 92 49 37 56.98 86 93 42 30 58.33 72 94 47 15 75.81 62 95 52 18 74.29 70 96 37 22 62.71 59 97 32 26 55.17 58 98 32 23 58.18 55 99 24 27 47.06 51 100 36 20 64.29 56 101 35 22 61.40 57 102 35 18 66.04 53 103 30 21 58.82 51 104 36 21 63.16 57 105 29 17 63.04 46 106 28 15 65.12 43 107 38 9 80.85 47 108 29 12 70.73 41 109 25 20 55.56 45 110 26 13 66.67 39 111 30 10 75.00 40 112 21 17 55.26 38 113 18 9 66.67 27 114 16 12 57.14 28 115 23 16 58.97 39 116 19 9 67.86 28 117 11 13 45.83 24 118 28 16 63.64 44 119 17 10 62.96 27 120 18 9 66.67 27 121 16 8 66.67 24 122 18 7 72.00 25 123 7 7 50.00 14 124 25 4 86.21 29 125 14 10 58.33 24 126 19 6 76.00 25 127 17 9 65.38 26 128 11 7 61.11 18 129 8 11 42.11 19 130 8 4 66.67 12 131 9 4 69.23 13 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 68 356 16.04 424 2 19 341 5.28 360 3 12 360 3.23 372 4 26 321 7.49 347 5 30 327 8.40 357 6 18 342 5.00 360 7 10 319 3.04 329 8 15 365 3.95 380 9 12 365 3.18 377 10 18 340 5.03 358 11 18 357 4.80 375 12 14 373 3.62 387 13 15 380 3.80 395 14 14 383 3.53 397 15 7 365 1.88 372 16 15 381 3.79 396 17 10 352 2.76 362 18 10 345 2.82 355 19 9 391 2.25 400 20 10 409 2.39 419 21 6 422 1.40 428 22 16 378 4.06 394 23 17 401 4.07 418 24 12 362 3.21 374 25 14 352 3.83 366 26 11 390 2.74 401 27 17 354 4.58 371 28 9 357 2.46 366 29 7 386 1.78 393 30 13 350 3.58 363 31 13 392 3.21 405 32 10 365 2.67 375 33 12 377 3.08 389 34 7 343 2.00 350 35 8 347 2.25 355 36 14 348 3.87 362 37 9 335 2.62 344 38 12 337 3.44 349 39 11 335 3.18 346 40 11 334 3.19 345 41 11 321 3.31 332 42 5 305 1.61 310 43 16 310 4.91 326 44 9 311 2.81 320 45 4 268 1.47 272 46 8 268 2.90 276 47 7 291 2.35 298 48 5 257 1.91 262 49 5 260 1.89 265 50 7 263 2.59 270 51 3 262 1.13 265 52 13 271 4.58 284 53 2 229 0.87 231 54 9 248 3.50 257 55 4 252 1.56 256 56 5 238 2.06 243 57 5 253 1.94 258 58 9 219 3.95 228 59 8 218 3.54 226 60 3 221 1.34 224 61 2 203 0.98 205 62 7 209 3.24 216 63 4 206 1.90 210 64 8 211 3.65 219 65 7 207 3.27 214 66 9 172 4.97 181 67 4 187 2.09 191 68 4 180 2.17 184 69 3 190 1.55 193 70 5 175 2.78 180 71 3 182 1.62 185 72 10 148 6.33 158 73 7 191 3.54 198 74 5 150 3.23 155 75 2 163 1.21 165 76 1 149 0.67 150 77 4 157 2.48 161 78 5 135 3.57 140 79 2 140 1.41 142 80 4 132 2.94 136 81 3 126 2.33 129 82 2 140 1.41 142 83 3 113 2.59 116 84 3 116 2.52 119 85 3 112 2.61 115 86 0 106 0.00 106 87 3 91 3.19 94 88 1 100 0.99 101 89 2 96 2.04 98 90 4 107 3.60 111 91 3 97 3.00 100 92 1 84 1.18 85 93 0 96 0.00 96 94 3 88 3.30 91 95 0 75 0.00 75 96 2 90 2.17 92 97 1 100 0.99 101 98 2 58 3.33 60 99 2 75 2.60 77 100 0 84 0.00 84 101 2 75 2.60 77 102 3 76 3.80 79 103 1 78 1.27 79 104 0 62 0.00 62 105 2 53 3.64 55 106 1 58 1.69 59 107 0 72 0.00 72 108 1 40 2.44 41 109 2 58 3.33 60 110 0 61 0.00 61 111 0 48 0.00 48 112 0 53 0.00 53 113 1 53 1.85 54 114 2 36 5.26 38 115 0 53 0.00 53 116 0 40 0.00 40 117 1 53 1.85 54 118 1 35 2.78 36 119 1 47 2.08 48 120 0 43 0.00 43 121 2 37 5.13 39 122 1 32 3.03 33 123 3 29 9.38 32 124 1 43 2.27 44 125 0 39 0.00 39 126 0 27 0.00 27 127 0 35 0.00 35 128 1 27 3.57 28 129 2 29 6.45 31 130 5 22 18.52 27 131 1 13 7.14 14 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 302 1044 22.44 1346 2 240 1108 17.80 1348 3 232 1027 18.43 1259 4 269 1079 19.96 1348 5 271 1065 20.28 1336 6 261 1081 19.45 1342 7 264 1042 20.21 1306 8 232 1074 17.76 1306 9 285 1073 20.99 1358 10 282 1071 20.84 1353 11 273 1063 20.43 1336 12 260 1018 20.34 1278 13 275 1072 20.42 1347 14 283 1040 21.39 1323 15 247 1067 18.80 1314 16 254 1077 19.08 1331 17 268 1102 19.56 1370 18 276 1100 20.06 1376 19 280 1099 20.30 1379 20 290 1130 20.42 1420 21 281 1096 20.41 1377 22 270 1086 19.91 1356 23 262 1071 19.65 1333 24 271 1170 18.81 1441 25 271 1102 19.74 1373 26 262 1110 19.10 1372 27 266 1103 19.43 1369 28 256 1085 19.09 1341 29 253 1130 18.29 1383 30 250 1104 18.46 1354 31 233 1083 17.71 1316 32 223 1043 17.61 1266 33 214 1035 17.13 1249 34 225 1094 17.06 1319 35 222 1005 18.09 1227 36 223 1025 17.87 1248 37 218 995 17.97 1213 38 208 1005 17.15 1213 39 198 1005 16.46 1203 40 178 928 16.09 1106 41 193 908 17.53 1101 42 183 949 16.17 1132 43 201 916 17.99 1117 44 195 888 18.01 1083 45 158 897 14.98 1055 46 165 866 16.00 1031 47 156 854 15.45 1010 48 165 865 16.02 1030 49 157 815 16.15 972 50 147 831 15.03 978 51 146 781 15.75 927 52 154 780 16.49 934 53 147 773 15.98 920 54 157 752 17.27 909 55 144 708 16.90 852 56 146 666 17.98 812 57 134 693 16.20 827 58 125 714 14.90 839 59 117 652 15.21 769 60 128 681 15.82 809 61 114 659 14.75 773 62 118 671 14.96 789 63 112 610 15.51 722 64 130 622 17.29 752 65 110 541 16.90 651 66 106 586 15.32 692 67 107 549 16.31 656 68 102 613 14.27 715 69 106 539 16.43 645 70 108 511 17.45 619 71 87 533 14.03 620 72 107 516 17.17 623 73 96 499 16.13 595 74 100 531 15.85 631 75 92 464 16.55 556 76 89 502 15.06 591 77 74 440 14.40 514 78 92 470 16.37 562 79 87 421 17.13 508 80 77 419 15.52 496 81 75 441 14.53 516 82 72 443 13.98 515 83 75 389 16.16 464 84 77 365 17.42 442 85 70 371 15.87 441 86 69 345 16.67 414 87 63 354 15.11 417 88 62 370 14.35 432 89 63 331 15.99 394 90 59 354 14.29 413 91 55 317 14.78 372 92 48 330 12.70 378 93 49 305 13.84 354 94 50 307 14.01 357 95 50 280 15.15 330 96 50 304 14.12 354 97 47 262 15.21 309 98 49 284 14.71 333 99 44 276 13.75 320 100 42 280 13.04 322 101 47 259 15.36 306 102 43 274 13.56 317 103 40 239 14.34 279 104 35 218 13.83 253 105 39 224 14.83 263 106 32 208 13.33 240 107 43 217 16.54 260 108 33 201 14.10 234 109 49 213 18.70 262 110 27 201 11.84 228 111 35 207 14.46 242 112 30 193 13.45 223 113 36 180 16.67 216 114 28 184 13.21 212 115 29 181 13.81 210 116 25 176 12.44 201 117 34 152 18.28 186 118 26 175 12.94 201 119 35 147 19.23 182 120 24 173 12.18 197 121 33 175 15.87 208 122 25 146 14.62 171 123 32 141 18.50 173 124 25 151 14.20 176 125 25 128 16.34 153 126 18 126 12.50 144 127 21 140 13.04 161 128 20 127 13.61 147 129 20 122 14.08 142 130 13 103 11.21 116 131 14 87 13.86 101 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11 10 52.38 21 2 18 8 69.23 26 3 31 7 81.58 38 4 16 12 57.14 28 5 10 7 58.82 17 6 4 10 28.57 14 7 6 11 35.29 17 8 13 10 56.52 23 9 7 11 38.89 18 10 9 11 45.00 20 11 11 7 61.11 18 12 11 10 52.38 21 13 17 7 70.83 24 14 9 4 69.23 13 15 8 5 61.54 13 16 13 10 56.52 23 17 6 3 66.67 9 18 4 9 30.77 13 19 6 10 37.50 16 20 7 5 58.33 12 21 1 2 33.33 3 22 2 3 40.00 5 23 7 4 63.64 11 24 4 6 40.00 10 25 9 6 60.00 15 26 6 7 46.15 13 27 3 5 37.50 8 28 6 4 60.00 10 29 12 6 66.67 18 30 6 6 50.00 12 31 5 2 71.43 7 32 6 5 54.55 11 33 2 1 66.67 3 34 6 5 54.55 11 35 6 3 66.67 9 36 4 5 44.44 9 37 4 4 50.00 8 38 2 7 22.22 9 39 3 4 42.86 7 40 2 5 28.57 7 41 5 2 71.43 7 42 5 3 62.50 8 43 0 2 0.00 2 44 5 3 62.50 8 45 3 0 100.00 3 46 5 2 71.43 7 47 4 2 66.67 6 48 5 3 62.50 8 49 1 1 50.00 2 50 1 3 25.00 4 51 3 2 60.00 5 52 0 3 0.00 3 53 2 1 66.67 3 54 4 3 57.14 7 55 3 0 100.00 3 56 4 2 66.67 6 57 0 0 0 58 3 2 60.00 5 59 2 1 66.67 3 60 0 2 0.00 2 61 2 4 33.33 6 62 3 2 60.00 5 63 1 1 50.00 2 64 1 2 33.33 3 65 2 0 100.00 2 66 1 1 50.00 2 67 1 1 50.00 2 68 0 4 0.00 4 69 3 1 75.00 4 70 0 5 0.00 5 71 1 0 100.00 1 72 2 5 28.57 7 73 0 0 0 74 0 4 0.00 4 75 0 0 0 76 1 3 25.00 4 77 2 0 100.00 2 78 1 4 20.00 5 79 0 1 0.00 1 80 0 4 0.00 4 81 1 2 33.33 3 82 2 1 66.67 3 83 1 1 50.00 2 84 1 3 25.00 4 85 1 0 100.00 1 86 0 4 0.00 4 87 0 0 0 88 0 4 0.00 4 89 0 2 0.00 2 90 0 2 0.00 2 91 1 0 100.00 1 92 0 1 0.00 1 93 1 0 100.00 1 94 0 5 0.00 5 95 0 0 0 96 0 1 0.00 1 97 0 0 0 98 1 4 20.00 5 99 0 1 0.00 1 100 0 3 0.00 3 101 1 1 50.00 2 102 0 3 0.00 3 103 0 2 0.00 2 104 0 1 0.00 1 105 0 0 0 106 0 3 0.00 3 107 1 2 33.33 3 108 0 3 0.00 3 109 0 1 0.00 1 110 0 4 0.00 4 111 0 0 0 112 0 2 0.00 2 113 0 0 0 114 1 5 16.67 6 115 0 0 0 116 0 1 0.00 1 117 0 0 0 118 0 2 0.00 2 119 0 1 0.00 1 120 0 1 0.00 1 121 0 0 0 122 0 2 0.00 2 123 0 1 0.00 1 124 0 0 0 125 0 0 0 126 0 0 0 127 1 0 100.00 1 128 0 1 0.00 1 129 0 0 0 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 17 19.05 21 2 2 26 7.14 28 3 13 38 25.49 51 4 1 44 2.22 45 5 0 27 0.00 27 6 0 27 0.00 27 7 0 30 0.00 30 8 3 43 6.52 46 9 1 17 5.56 18 10 1 21 4.55 22 11 1 29 3.33 30 12 1 25 3.85 26 13 1 25 3.85 26 14 0 29 0.00 29 15 0 26 0.00 26 16 0 29 0.00 29 17 1 22 4.35 23 18 0 18 0.00 18 19 0 16 0.00 16 20 0 18 0.00 18 21 0 16 0.00 16 22 1 16 5.88 17 23 0 14 0.00 14 24 0 13 0.00 13 25 0 15 0.00 15 26 0 13 0.00 13 27 0 13 0.00 13 28 0 10 0.00 10 29 0 14 0.00 14 30 0 17 0.00 17 31 1 10 9.09 11 32 0 7 0.00 7 33 0 12 0.00 12 34 0 7 0.00 7 35 1 11 8.33 12 36 0 8 0.00 8 37 0 9 0.00 9 38 0 8 0.00 8 39 0 11 0.00 11 40 1 10 9.09 11 41 0 8 0.00 8 42 0 4 0.00 4 43 0 6 0.00 6 44 0 11 0.00 11 45 0 8 0.00 8 46 0 7 0.00 7 47 0 4 0.00 4 48 0 10 0.00 10 49 0 5 0.00 5 50 0 3 0.00 3 51 0 2 0.00 2 52 0 5 0.00 5 53 0 4 0.00 4 54 0 3 0.00 3 55 1 1 50.00 2 56 0 3 0.00 3 57 0 6 0.00 6 58 0 4 0.00 4 59 1 5 16.67 6 60 0 5 0.00 5 61 0 2 0.00 2 62 0 2 0.00 2 63 0 4 0.00 4 64 0 4 0.00 4 65 0 3 0.00 3 66 0 2 0.00 2 67 0 2 0.00 2 68 0 1 0.00 1 69 0 3 0.00 3 70 0 4 0.00 4 71 0 1 0.00 1 72 0 1 0.00 1 73 0 2 0.00 2 74 0 4 0.00 4 75 0 0 0 76 0 0 0 77 1 6 14.29 7 78 0 4 0.00 4 79 0 5 0.00 5 80 0 1 0.00 1 81 0 2 0.00 2 82 0 1 0.00 1 83 0 3 0.00 3 84 0 4 0.00 4 85 0 2 0.00 2 86 0 3 0.00 3 87 1 0 100.00 1 88 0 1 0.00 1 89 0 1 0.00 1 90 0 0 0 91 2 2 50.00 4 92 0 1 0.00 1 93 0 2 0.00 2 94 0 0 0 95 0 1 0.00 1 96 0 0 0 97 0 0 0 98 0 1 0.00 1 99 0 2 0.00 2 100 0 0 0 101 0 2 0.00 2 102 0 3 0.00 3 103 0 0 0 104 0 1 0.00 1 105 0 3 0.00 3 106 0 3 0.00 3 107 0 1 0.00 1 108 0 1 0.00 1 109 0 0 0 110 0 0 0 111 0 1 0.00 1 112 0 1 0.00 1 113 0 0 0 114 0 0 0 115 1 1 50.00 2 116 0 1 0.00 1 117 0 0 0 118 0 0 0 119 0 1 0.00 1 120 0 1 0.00 1 121 0 0 0 122 0 1 0.00 1 123 0 0 0 124 0 0 0 125 0 1 0.00 1 126 0 0 0 127 0 0 0 128 1 0 100.00 1 129 0 0 0 130 0 0 0 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42 126 25.00 168 2 18 102 15.00 120 3 48 126 27.59 174 4 22 116 15.94 138 5 36 80 31.03 116 6 22 100 18.03 122 7 39 89 30.47 128 8 25 100 20.00 125 9 36 100 26.47 136 10 27 77 25.96 104 11 41 79 34.17 120 12 30 90 25.00 120 13 36 96 27.27 132 14 29 84 25.66 113 15 33 90 26.83 123 16 23 77 23.00 100 17 30 77 28.04 107 18 21 64 24.71 85 19 32 64 33.33 96 20 12 83 12.63 95 21 31 70 30.69 101 22 14 70 16.67 84 23 29 78 27.10 107 24 17 61 21.79 78 25 22 62 26.19 84 26 16 64 20.00 80 27 26 58 30.95 84 28 12 57 17.39 69 29 20 62 24.39 82 30 15 75 16.67 90 31 27 67 28.72 94 32 15 67 18.29 82 33 26 50 34.21 76 34 14 63 18.18 77 35 24 58 29.27 82 36 16 61 20.78 77 37 23 46 33.33 69 38 10 54 15.62 64 39 24 61 28.24 85 40 18 54 25.00 72 41 24 52 31.58 76 42 14 49 22.22 63 43 26 54 32.50 80 44 10 46 17.86 56 45 24 44 35.29 68 46 12 46 20.69 58 47 26 48 35.14 74 48 13 40 24.53 53 49 24 49 32.88 73 50 14 48 22.58 62 51 25 53 32.05 78 52 13 42 23.64 55 53 19 48 28.36 67 54 17 41 29.31 58 55 19 47 28.79 66 56 13 47 21.67 60 57 18 43 29.51 61 58 12 44 21.43 56 59 15 42 26.32 57 60 13 47 21.67 60 61 18 37 32.73 55 62 10 41 19.61 51 63 16 40 28.57 56 64 11 41 21.15 52 65 17 40 29.82 57 66 11 44 20.00 55 67 14 37 27.45 51 68 11 42 20.75 53 69 13 41 24.07 54 70 12 45 21.05 57 71 14 34 29.17 48 72 9 49 15.52 58 73 13 32 28.89 45 74 9 45 16.67 54 75 14 35 28.57 49 76 8 39 17.02 47 77 12 25 32.43 37 78 9 37 19.57 46 79 11 31 26.19 42 80 8 38 17.39 46 81 8 31 20.51 39 82 4 36 10.00 40 83 6 32 15.79 38 84 4 41 8.89 45 85 7 34 17.07 41 86 5 32 13.51 37 87 6 31 16.22 37 88 6 35 14.63 41 89 7 32 17.95 39 90 4 32 11.11 36 91 6 34 15.00 40 92 3 25 10.71 28 93 4 36 10.00 40 94 3 35 7.89 38 95 4 31 11.43 35 96 3 32 8.57 35 97 3 31 8.82 34 98 4 30 11.76 34 99 4 32 11.11 36 100 1 29 3.33 30 101 3 31 8.82 34 102 1 30 3.23 31 103 4 30 11.76 34 104 2 30 6.25 32 105 6 28 17.65 34 106 3 30 9.09 33 107 5 21 19.23 26 108 2 33 5.71 35 109 3 30 9.09 33 110 1 31 3.12 32 111 3 28 9.68 31 112 1 31 3.12 32 113 2 27 6.90 29 114 3 26 10.34 29 115 3 27 10.00 30 116 4 26 13.33 30 117 3 24 11.11 27 118 1 28 3.45 29 119 4 23 14.81 27 120 0 28 0.00 28 121 1 20 4.76 21 122 1 27 3.57 28 123 0 26 0.00 26 124 1 27 3.57 28 125 2 20 9.09 22 126 2 25 7.41 27 127 1 16 5.88 17 128 2 24 7.69 26 129 1 20 4.76 21 130 0 23 0.00 23 131 1 0 100.00 1