/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11697
Pairs without alignments under any condition
22940
Pairs that did not map uniquely
5363
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
354504
Methylated C's in CpG context
34313
Methylated C's in CHG context
2018
Methylated C's in CHH context
37642
Methylated C's in Unknown context
610
Unmethylated C's in CpG context
15902
Unmethylated C's in CHG context
66016
Unmethylated C's in CHH context
198613
Unmethylated C's in Unknown context
1418
Percentage methylation (CpG context)
68.3%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
15.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5808
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5889
original bottom strand
Deduplication
Alignments analysed
11697
Unique alignments
9689
Duplicates removed
2008
Duplicated alignments were found at 1567 different positions
