CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 74 98 43.02 172 2 113 127 47.08 240 3 63 103 37.95 166 4 47 95 33.10 142 5 52 132 28.26 184 6 56 103 35.22 159 7 49 106 31.61 155 8 63 117 35.00 180 9 54 105 33.96 159 10 53 105 33.54 158 11 60 104 36.59 164 12 52 103 33.55 155 13 68 113 37.57 181 14 67 102 39.64 169 15 56 137 29.02 193 16 65 106 38.01 171 17 61 97 38.61 158 18 52 127 29.05 179 19 43 111 27.92 154 20 59 110 34.91 169 21 50 96 34.25 146 22 81 107 43.09 188 23 63 105 37.50 168 24 54 112 32.53 166 25 51 117 30.36 168 26 60 105 36.36 165 27 59 86 40.69 145 28 50 118 29.76 168 29 57 116 32.95 173 30 56 129 30.27 185 31 55 99 35.71 154 32 48 112 30.00 160 33 51 97 34.46 148 34 57 111 33.93 168 35 43 108 28.48 151 36 67 97 40.85 164 37 44 91 32.59 135 38 56 109 33.94 165 39 50 90 35.71 140 40 44 112 28.21 156 41 66 90 42.31 156 42 52 85 37.96 137 43 45 101 30.82 146 44 42 115 26.75 157 45 59 79 42.75 138 46 44 97 31.21 141 47 48 95 33.57 143 48 49 98 33.33 147 49 56 83 40.29 139 50 49 103 32.24 152 51 42 88 32.31 130 52 39 88 30.71 127 53 40 82 32.79 122 54 38 90 29.69 128 55 38 65 36.89 103 56 34 93 26.77 127 57 39 79 33.05 118 58 36 94 27.69 130 59 35 87 28.69 122 60 35 75 31.82 110 61 34 72 32.08 106 62 37 75 33.04 112 63 34 64 34.69 98 64 45 78 36.59 123 65 38 69 35.51 107 66 34 69 33.01 103 67 31 59 34.44 90 68 33 73 31.13 106 69 26 62 29.55 88 70 39 66 37.14 105 71 35 76 31.53 111 72 31 74 29.52 105 73 29 47 38.16 76 74 29 63 31.52 92 75 37 49 43.02 86 76 28 55 33.73 83 77 23 63 26.74 86 78 31 64 32.63 95 79 30 54 35.71 84 80 35 52 40.23 87 81 26 52 33.33 78 82 22 65 25.29 87 83 25 65 27.78 90 84 26 50 34.21 76 85 21 42 33.33 63 86 19 57 25.00 76 87 19 38 33.33 57 88 20 50 28.57 70 89 17 42 28.81 59 90 16 47 25.40 63 91 20 39 33.90 59 92 13 54 19.40 67 93 22 46 32.35 68 94 10 44 18.52 54 95 14 37 27.45 51 96 22 36 37.93 58 97 20 39 33.90 59 98 19 36 34.55 55 99 20 29 40.82 49 100 12 24 33.33 36 101 15 31 32.61 46 102 22 27 44.90 49 103 22 31 41.51 53 104 15 28 34.88 43 105 7 28 20.00 35 106 12 34 26.09 46 107 11 35 23.91 46 108 8 24 25.00 32 109 21 28 42.86 49 110 9 33 21.43 42 111 5 28 15.15 33 112 10 31 24.39 41 113 12 29 29.27 41 114 7 28 20.00 35 115 18 26 40.91 44 116 9 26 25.71 35 117 8 24 25.00 32 118 9 28 24.32 37 119 17 21 44.74 38 120 11 17 39.29 28 121 4 16 20.00 20 122 12 15 44.44 27 123 9 16 36.00 25 124 13 21 38.24 34 125 5 19 20.83 24 126 14 21 40.00 35 127 8 26 23.53 34 128 5 19 20.83 24 129 4 14 22.22 18 130 4 16 20.00 20 131 6 15 28.57 21 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 75 213 26.04 288 2 12 220 5.17 232 3 11 220 4.76 231 4 18 191 8.61 209 5 25 242 9.36 267 6 27 208 11.49 235 7 18 194 8.49 212 8 14 181 7.18 195 9 11 224 4.68 235 10 12 228 5.00 240 11 9 215 4.02 224 12 12 232 4.92 244 13 14 217 6.06 231 14 16 220 6.78 236 15 16 225 6.64 241 16 13 219 5.60 232 17 11 226 4.64 237 18 13 194 6.28 207 19 8 196 3.92 204 20 9 258 3.37 267 21 9 261 3.33 270 22 6 241 2.43 247 23 5 214 2.28 219 24 11 228 4.60 239 25 10 224 4.27 234 26 10 226 4.24 236 27 9 233 3.72 242 28 10 207 4.61 217 29 5 217 2.25 222 30 8 244 3.17 252 31 9 204 4.23 213 32 10 197 4.83 207 33 8 252 3.08 260 34 9 211 4.09 220 35 8 208 3.70 216 36 11 199 5.24 210 37 14 239 5.53 253 38 9 181 4.74 190 39 5 221 2.21 226 40 8 214 3.60 222 41 3 187 1.58 190 42 12 215 5.29 227 43 9 179 4.79 188 44 8 208 3.70 216 45 10 179 5.29 189 46 6 186 3.12 192 47 7 198 3.41 205 48 9 183 4.69 192 49 7 185 3.65 192 50 10 168 5.62 178 51 7 166 4.05 173 52 6 170 3.41 176 53 8 175 4.37 183 54 6 170 3.41 176 55 3 185 1.60 188 56 5 156 3.11 161 57 3 166 1.78 169 58 5 157 3.09 162 59 4 155 2.52 159 60 8 167 4.57 175 61 6 159 3.64 165 62 4 130 2.99 134 63 6 160 3.61 166 64 8 122 6.15 130 65 6 147 3.92 153 66 5 132 3.65 137 67 8 135 5.59 143 68 9 125 6.72 134 69 5 119 4.03 124 70 2 132 1.49 134 71 4 140 2.78 144 72 2 121 1.63 123 73 8 125 6.02 133 74 1 109 0.91 110 75 3 112 2.61 115 76 2 115 1.71 117 77 5 126 3.82 131 78 3 106 2.75 109 79 5 105 4.55 110 80 2 104 1.89 106 81 4 99 3.88 103 82 3 109 2.68 112 83 3 105 2.78 108 84 6 97 5.83 103 85 2 96 2.04 98 86 1 74 1.33 75 87 4 96 4.00 100 88 2 97 2.02 99 89 1 80 1.23 81 90 3 92 3.16 95 91 5 85 5.56 90 92 2 71 2.74 73 93 4 64 5.88 68 94 1 87 1.14 88 95 3 79 3.66 82 96 4 63 5.97 67 97 1 72 1.37 73 98 5 76 6.17 81 99 4 71 5.33 75 100 2 70 2.78 72 101 1 61 1.61 62 102 2 65 2.99 67 103 2 56 3.45 58 104 4 68 5.56 72 105 0 55 0.00 55 106 1 57 1.72 58 107 4 55 6.78 59 108 2 44 4.35 46 109 3 50 5.66 53 110 2 62 3.12 64 111 2 38 5.00 40 112 1 52 1.89 53 113 1 51 1.92 52 114 3 45 6.25 48 115 0 55 0.00 55 116 4 45 8.16 49 117 1 49 2.00 50 118 1 40 2.44 41 119 1 38 2.56 39 120 0 46 0.00 46 121 2 42 4.55 44 122 3 32 8.57 35 123 4 38 9.52 42 124 0 33 0.00 33 125 0 40 0.00 40 126 3 30 9.09 33 127 1 30 3.23 31 128 4 24 14.29 28 129 3 37 7.50 40 130 3 35 7.89 38 131 0 19 0.00 19 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 429 619 40.94 1048 2 328 670 32.87 998 3 367 634 36.66 1001 4 372 632 37.05 1004 5 372 661 36.01 1033 6 381 622 37.99 1003 7 389 634 38.03 1023 8 366 645 36.20 1011 9 379 612 38.24 991 10 411 595 40.85 1006 11 402 606 39.88 1008 12 389 629 38.21 1018 13 425 681 38.43 1106 14 402 647 38.32 1049 15 385 651 37.16 1036 16 416 702 37.21 1118 17 395 610 39.30 1005 18 386 635 37.81 1021 19 427 679 38.61 1106 20 376 684 35.47 1060 21 403 647 38.38 1050 22 430 653 39.70 1083 23 397 668 37.28 1065 24 415 665 38.43 1080 25 439 689 38.92 1128 26 381 694 35.44 1075 27 390 688 36.18 1078 28 401 672 37.37 1073 29 399 628 38.85 1027 30 431 639 40.28 1070 31 432 642 40.22 1074 32 407 695 36.93 1102 33 372 675 35.53 1047 34 430 654 39.67 1084 35 350 665 34.48 1015 36 385 671 36.46 1056 37 390 642 37.79 1032 38 365 619 37.09 984 39 348 621 35.91 969 40 392 616 38.89 1008 41 331 622 34.73 953 42 367 577 38.88 944 43 354 593 37.38 947 44 351 578 37.78 929 45 325 609 34.80 934 46 336 547 38.05 883 47 301 560 34.96 861 48 349 585 37.37 934 49 313 538 36.78 851 50 321 547 36.98 868 51 280 525 34.78 805 52 338 517 39.53 855 53 297 496 37.45 793 54 326 511 38.95 837 55 281 495 36.21 776 56 295 532 35.67 827 57 280 508 35.53 788 58 294 488 37.60 782 59 276 455 37.76 731 60 278 481 36.63 759 61 233 474 32.96 707 62 250 457 35.36 707 63 230 454 33.63 684 64 254 431 37.08 685 65 228 454 33.43 682 66 229 439 34.28 668 67 237 404 36.97 641 68 243 405 37.50 648 69 221 364 37.78 585 70 224 360 38.36 584 71 218 368 37.20 586 72 228 369 38.19 597 73 213 329 39.30 542 74 212 355 37.39 567 75 182 385 32.10 567 76 196 361 35.19 557 77 185 327 36.13 512 78 192 350 35.42 542 79 188 342 35.47 530 80 189 328 36.56 517 81 151 299 33.56 450 82 194 309 38.57 503 83 169 287 37.06 456 84 184 300 38.02 484 85 163 290 35.98 453 86 170 336 33.60 506 87 150 299 33.41 449 88 165 284 36.75 449 89 160 279 36.45 439 90 162 279 36.73 441 91 137 243 36.05 380 92 143 259 35.57 402 93 128 236 35.16 364 94 149 247 37.63 396 95 133 217 38.00 350 96 143 235 37.83 378 97 113 233 32.66 346 98 117 223 34.41 340 99 115 202 36.28 317 100 114 210 35.19 324 101 118 206 36.42 324 102 105 215 32.81 320 103 108 211 33.86 319 104 111 200 35.69 311 105 94 172 35.34 266 106 104 199 34.32 303 107 91 196 31.71 287 108 96 205 31.89 301 109 96 197 32.76 293 110 85 176 32.57 261 111 82 172 32.28 254 112 85 170 33.33 255 113 83 148 35.93 231 114 80 128 38.46 208 115 84 152 35.59 236 116 74 153 32.60 227 117 67 165 28.88 232 118 75 146 33.94 221 119 63 157 28.64 220 120 70 129 35.18 199 121 74 146 33.64 220 122 69 121 36.32 190 123 59 115 33.91 174 124 66 124 34.74 190 125 54 132 29.03 186 126 64 117 35.36 181 127 53 119 30.81 172 128 58 123 32.04 181 129 48 100 32.43 148 130 49 90 35.25 139 131 25 90 21.74 115 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 21 25.00 28 2 9 17 34.62 26 3 27 14 65.85 41 4 1 22 4.35 23 5 5 18 21.74 23 6 9 21 30.00 30 7 3 14 17.65 17 8 6 16 27.27 22 9 4 16 20.00 20 10 3 20 13.04 23 11 4 16 20.00 20 12 4 14 22.22 18 13 6 19 24.00 25 14 2 20 9.09 22 15 5 21 19.23 26 16 1 15 6.25 16 17 5 11 31.25 16 18 2 14 12.50 16 19 6 18 25.00 24 20 1 16 5.88 17 21 4 13 23.53 17 22 0 11 0.00 11 23 3 9 25.00 12 24 6 13 31.58 19 25 4 12 25.00 16 26 3 16 15.79 19 27 4 7 36.36 11 28 7 12 36.84 19 29 5 12 29.41 17 30 4 10 28.57 14 31 1 9 10.00 10 32 2 12 14.29 14 33 3 8 27.27 11 34 5 10 33.33 15 35 3 6 33.33 9 36 0 9 0.00 9 37 1 10 9.09 11 38 3 7 30.00 10 39 3 5 37.50 8 40 6 4 60.00 10 41 2 6 25.00 8 42 1 5 16.67 6 43 1 14 6.67 15 44 4 4 50.00 8 45 0 6 0.00 6 46 5 5 50.00 10 47 2 5 28.57 7 48 2 6 25.00 8 49 2 5 28.57 7 50 3 4 42.86 7 51 0 4 0.00 4 52 1 3 25.00 4 53 1 7 12.50 8 54 0 6 0.00 6 55 1 5 16.67 6 56 1 3 25.00 4 57 1 8 11.11 9 58 2 6 25.00 8 59 1 2 33.33 3 60 3 6 33.33 9 61 1 9 10.00 10 62 2 4 33.33 6 63 1 5 16.67 6 64 2 2 50.00 4 65 0 5 0.00 5 66 0 4 0.00 4 67 0 1 0.00 1 68 2 3 40.00 5 69 1 2 33.33 3 70 0 3 0.00 3 71 1 4 20.00 5 72 1 5 16.67 6 73 0 4 0.00 4 74 0 4 0.00 4 75 0 7 0.00 7 76 1 3 25.00 4 77 0 4 0.00 4 78 1 4 20.00 5 79 2 3 40.00 5 80 0 6 0.00 6 81 1 1 50.00 2 82 0 2 0.00 2 83 1 1 50.00 2 84 0 2 0.00 2 85 0 2 0.00 2 86 0 1 0.00 1 87 0 2 0.00 2 88 0 1 0.00 1 89 1 1 50.00 2 90 0 2 0.00 2 91 0 0 0 92 0 2 0.00 2 93 0 2 0.00 2 94 0 1 0.00 1 95 0 1 0.00 1 96 1 0 100.00 1 97 0 5 0.00 5 98 0 3 0.00 3 99 1 3 25.00 4 100 0 0 0 101 0 1 0.00 1 102 0 2 0.00 2 103 0 2 0.00 2 104 0 2 0.00 2 105 0 3 0.00 3 106 0 4 0.00 4 107 0 0 0 108 0 1 0.00 1 109 0 0 0 110 0 5 0.00 5 111 0 1 0.00 1 112 0 1 0.00 1 113 0 0 0 114 1 2 33.33 3 115 0 2 0.00 2 116 0 0 0 117 0 1 0.00 1 118 0 2 0.00 2 119 0 0 0 120 1 4 20.00 5 121 1 0 100.00 1 122 0 2 0.00 2 123 3 0 100.00 3 124 0 0 0 125 0 2 0.00 2 126 0 0 0 127 1 1 50.00 2 128 0 0 0 129 0 0 0 130 0 1 0.00 1 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 33 10.81 37 2 6 34 15.00 40 3 10 40 20.00 50 4 4 67 5.63 71 5 2 33 5.71 35 6 2 34 5.56 36 7 3 36 7.69 39 8 7 47 12.96 54 9 0 31 0.00 31 10 2 23 8.00 25 11 1 35 2.78 36 12 1 30 3.23 31 13 2 23 8.00 25 14 3 28 9.68 31 15 1 30 3.23 31 16 0 25 0.00 25 17 1 34 2.86 35 18 0 25 0.00 25 19 0 19 0.00 19 20 1 23 4.17 24 21 1 18 5.26 19 22 0 25 0.00 25 23 2 23 8.00 25 24 0 18 0.00 18 25 0 9 0.00 9 26 0 19 0.00 19 27 1 17 5.56 18 28 1 12 7.69 13 29 0 13 0.00 13 30 2 12 14.29 14 31 0 13 0.00 13 32 0 10 0.00 10 33 1 11 8.33 12 34 1 11 8.33 12 35 1 14 6.67 15 36 1 13 7.14 14 37 2 14 12.50 16 38 0 10 0.00 10 39 0 9 0.00 9 40 0 12 0.00 12 41 2 10 16.67 12 42 0 8 0.00 8 43 1 9 10.00 10 44 0 11 0.00 11 45 1 4 20.00 5 46 1 7 12.50 8 47 0 14 0.00 14 48 0 6 0.00 6 49 0 8 0.00 8 50 3 7 30.00 10 51 0 6 0.00 6 52 0 6 0.00 6 53 0 11 0.00 11 54 1 3 25.00 4 55 0 10 0.00 10 56 0 9 0.00 9 57 0 5 0.00 5 58 1 8 11.11 9 59 1 7 12.50 8 60 0 4 0.00 4 61 1 7 12.50 8 62 0 7 0.00 7 63 0 3 0.00 3 64 0 3 0.00 3 65 0 7 0.00 7 66 0 2 0.00 2 67 1 7 12.50 8 68 0 4 0.00 4 69 0 4 0.00 4 70 0 2 0.00 2 71 0 4 0.00 4 72 0 4 0.00 4 73 0 5 0.00 5 74 0 4 0.00 4 75 0 4 0.00 4 76 0 6 0.00 6 77 0 2 0.00 2 78 1 7 12.50 8 79 0 6 0.00 6 80 0 4 0.00 4 81 0 4 0.00 4 82 0 1 0.00 1 83 0 6 0.00 6 84 0 1 0.00 1 85 0 2 0.00 2 86 0 5 0.00 5 87 0 4 0.00 4 88 1 3 25.00 4 89 0 2 0.00 2 90 0 1 0.00 1 91 0 4 0.00 4 92 0 3 0.00 3 93 0 2 0.00 2 94 0 3 0.00 3 95 0 1 0.00 1 96 0 3 0.00 3 97 0 1 0.00 1 98 0 3 0.00 3 99 0 0 0 100 0 1 0.00 1 101 0 1 0.00 1 102 0 2 0.00 2 103 0 1 0.00 1 104 0 1 0.00 1 105 0 4 0.00 4 106 0 3 0.00 3 107 0 2 0.00 2 108 0 1 0.00 1 109 0 0 0 110 0 1 0.00 1 111 0 4 0.00 4 112 0 1 0.00 1 113 0 1 0.00 1 114 2 2 50.00 4 115 0 3 0.00 3 116 0 1 0.00 1 117 0 3 0.00 3 118 0 0 0 119 0 2 0.00 2 120 0 1 0.00 1 121 0 2 0.00 2 122 0 1 0.00 1 123 0 0 0 124 0 2 0.00 2 125 0 2 0.00 2 126 1 1 50.00 2 127 0 1 0.00 1 128 0 0 0 129 0 3 0.00 3 130 1 0 100.00 1 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 86 135 38.91 221 2 66 119 35.68 185 3 80 126 38.83 206 4 64 137 31.84 201 5 69 100 40.83 169 6 55 104 34.59 159 7 79 87 47.59 166 8 71 113 38.59 184 9 84 101 45.41 185 10 80 118 40.40 198 11 78 81 49.06 159 12 74 97 43.27 171 13 74 86 46.25 160 14 65 96 40.37 161 15 82 90 47.67 172 16 63 114 35.59 177 17 69 93 42.59 162 18 55 81 40.44 136 19 75 72 51.02 147 20 54 70 43.55 124 21 72 84 46.15 156 22 50 75 40.00 125 23 71 66 51.82 137 24 51 74 40.80 125 25 71 76 48.30 147 26 52 68 43.33 120 27 73 65 52.90 138 28 40 58 40.82 98 29 72 51 58.54 123 30 44 71 38.26 115 31 73 58 55.73 131 32 45 51 46.88 96 33 64 45 58.72 109 34 43 62 40.95 105 35 63 56 52.94 119 36 44 56 44.00 100 37 62 44 58.49 106 38 48 55 46.60 103 39 58 45 56.31 103 40 45 54 45.45 99 41 50 41 54.95 91 42 47 46 50.54 93 43 47 44 51.65 91 44 44 47 48.35 91 45 43 35 55.13 78 46 44 38 53.66 82 47 46 38 54.76 84 48 38 44 46.34 82 49 38 37 50.67 75 50 34 51 40.00 85 51 43 33 56.58 76 52 28 46 37.84 74 53 43 35 55.13 78 54 28 43 39.44 71 55 37 35 51.39 72 56 30 34 46.88 64 57 40 29 57.97 69 58 22 28 44.00 50 59 38 27 58.46 65 60 28 29 49.12 57 61 36 33 52.17 69 62 26 34 43.33 60 63 30 29 50.85 59 64 24 31 43.64 55 65 32 29 52.46 61 66 27 27 50.00 54 67 31 30 50.82 61 68 28 27 50.91 55 69 32 26 55.17 58 70 20 27 42.55 47 71 35 28 55.56 63 72 22 21 51.16 43 73 28 24 53.85 52 74 25 17 59.52 42 75 28 24 53.85 52 76 23 25 47.92 48 77 24 20 54.55 44 78 21 20 51.22 41 79 23 21 52.27 44 80 23 21 52.27 44 81 16 31 34.04 47 82 17 19 47.22 36 83 21 22 48.84 43 84 18 21 46.15 39 85 17 19 47.22 36 86 21 18 53.85 39 87 17 20 45.95 37 88 14 20 41.18 34 89 20 20 50.00 40 90 19 18 51.35 37 91 17 14 54.84 31 92 15 15 50.00 30 93 14 16 46.67 30 94 13 18 41.94 31 95 16 13 55.17 29 96 12 17 41.38 29 97 15 15 50.00 30 98 13 17 43.33 30 99 11 14 44.00 25 100 13 23 36.11 36 101 16 21 43.24 37 102 13 18 41.94 31 103 12 15 44.44 27 104 13 13 50.00 26 105 8 14 36.36 22 106 11 16 40.74 27 107 10 12 45.45 22 108 9 12 42.86 21 109 10 16 38.46 26 110 12 12 50.00 24 111 10 13 43.48 23 112 10 13 43.48 23 113 10 15 40.00 25 114 7 12 36.84 19 115 7 12 36.84 19 116 9 12 42.86 21 117 9 13 40.91 22 118 7 10 41.18 17 119 11 17 39.29 28 120 8 11 42.11 19 121 10 13 43.48 23 122 9 9 50.00 18 123 8 10 44.44 18 124 6 13 31.58 19 125 10 13 43.48 23 126 6 9 40.00 15 127 9 11 45.00 20 128 10 10 50.00 20 129 6 12 33.33 18 130 5 11 31.25 16 131 6 1 85.71 7