/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
9606
Pairs without alignments under any condition
24178
Pairs that did not map uniquely
6216
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
277885
Methylated C's in CpG context
11033
Methylated C's in CHG context
1998
Methylated C's in CHH context
68316
Methylated C's in Unknown context
794
Unmethylated C's in CpG context
21736
Unmethylated C's in CHG context
44178
Unmethylated C's in CHH context
130624
Unmethylated C's in Unknown context
1212
Percentage methylation (CpG context)
33.7%
Percentage methylation (CHG context)
4.3%
Percentage methylation (CHH context)
34.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4706
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4900
original bottom strand
Deduplication
Alignments analysed
9606
Unique alignments
8237
Duplicates removed
1369
Duplicated alignments were found at 1059 different positions
