CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 217 88 71.15 305 2 255 111 69.67 366 3 223 98 69.47 321 4 247 80 75.54 327 5 228 87 72.38 315 6 216 99 68.57 315 7 210 88 70.47 298 8 217 93 70.00 310 9 205 82 71.43 287 10 231 92 71.52 323 11 227 82 73.46 309 12 221 89 71.29 310 13 252 92 73.26 344 14 242 97 71.39 339 15 242 80 75.16 322 16 223 91 71.02 314 17 221 92 70.61 313 18 216 90 70.59 306 19 236 77 75.40 313 20 208 78 72.73 286 21 225 85 72.58 310 22 256 84 75.29 340 23 237 100 70.33 337 24 234 89 72.45 323 25 228 97 70.15 325 26 221 88 71.52 309 27 236 79 74.92 315 28 217 63 77.50 280 29 220 81 73.09 301 30 247 90 73.29 337 31 206 80 72.03 286 32 218 79 73.40 297 33 214 92 69.93 306 34 208 71 74.55 279 35 206 67 75.46 273 36 214 59 78.39 273 37 215 83 72.15 298 38 218 81 72.91 299 39 205 75 73.21 280 40 225 72 75.76 297 41 191 60 76.10 251 42 219 64 77.39 283 43 205 68 75.09 273 44 191 68 73.75 259 45 210 84 71.43 294 46 209 54 79.47 263 47 179 67 72.76 246 48 178 74 70.63 252 49 170 60 73.91 230 50 193 66 74.52 259 51 205 66 75.65 271 52 187 75 71.37 262 53 163 65 71.49 228 54 173 55 75.88 228 55 170 61 73.59 231 56 149 56 72.68 205 57 202 61 76.81 263 58 150 67 69.12 217 59 176 68 72.13 244 60 168 52 76.36 220 61 132 50 72.53 182 62 146 57 71.92 203 63 143 52 73.33 195 64 158 54 74.53 212 65 136 57 70.47 193 66 127 48 72.57 175 67 123 49 71.51 172 68 112 49 69.57 161 69 127 46 73.41 173 70 121 48 71.60 169 71 123 45 73.21 168 72 103 54 65.61 157 73 112 48 70.00 160 74 99 40 71.22 139 75 111 44 71.61 155 76 123 32 79.35 155 77 110 37 74.83 147 78 96 44 68.57 140 79 81 47 63.28 128 80 87 32 73.11 119 81 98 31 75.97 129 82 84 36 70.00 120 83 81 32 71.68 113 84 78 27 74.29 105 85 74 35 67.89 109 86 93 37 71.54 130 87 75 35 68.18 110 88 66 31 68.04 97 89 91 32 73.98 123 90 79 20 79.80 99 91 86 31 73.50 117 92 71 29 71.00 100 93 83 30 73.45 113 94 69 21 76.67 90 95 77 24 76.24 101 96 64 25 71.91 89 97 66 20 76.74 86 98 66 18 78.57 84 99 65 21 75.58 86 100 62 31 66.67 93 101 59 21 73.75 80 102 51 18 73.91 69 103 36 14 72.00 50 104 46 27 63.01 73 105 50 22 69.44 72 106 47 18 72.31 65 107 35 22 61.40 57 108 36 17 67.92 53 109 41 22 65.08 63 110 50 22 69.44 72 111 29 14 67.44 43 112 44 17 72.13 61 113 48 15 76.19 63 114 43 16 72.88 59 115 30 17 63.83 47 116 34 14 70.83 48 117 40 15 72.73 55 118 28 15 65.12 43 119 42 8 84.00 50 120 24 18 57.14 42 121 29 14 67.44 43 122 25 14 64.10 39 123 36 15 70.59 51 124 19 13 59.38 32 125 16 8 66.67 24 126 27 6 81.82 33 127 33 10 76.74 43 128 25 17 59.52 42 129 22 12 64.71 34 130 25 8 75.76 33 131 12 3 80.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 66 385 14.63 451 2 18 375 4.58 393 3 22 394 5.29 416 4 25 413 5.71 438 5 24 382 5.91 406 6 23 405 5.37 428 7 10 398 2.45 408 8 12 430 2.71 442 9 17 385 4.23 402 10 20 399 4.77 419 11 15 421 3.44 436 12 11 442 2.43 453 13 24 431 5.27 455 14 17 424 3.85 441 15 16 389 3.95 405 16 9 400 2.20 409 17 14 398 3.40 412 18 11 401 2.67 412 19 10 381 2.56 391 20 16 432 3.57 448 21 12 418 2.79 430 22 13 409 3.08 422 23 14 406 3.33 420 24 13 448 2.82 461 25 12 366 3.17 378 26 19 396 4.58 415 27 17 404 4.04 421 28 13 417 3.02 430 29 24 397 5.70 421 30 7 406 1.69 413 31 13 400 3.15 413 32 10 373 2.61 383 33 9 368 2.39 377 34 11 379 2.82 390 35 8 347 2.25 355 36 13 388 3.24 401 37 9 340 2.58 349 38 13 356 3.52 369 39 12 378 3.08 390 40 13 350 3.58 363 41 10 373 2.61 383 42 13 339 3.69 352 43 16 346 4.42 362 44 11 309 3.44 320 45 9 365 2.41 374 46 14 316 4.24 330 47 12 344 3.37 356 48 7 312 2.19 319 49 7 316 2.17 323 50 13 319 3.92 332 51 12 302 3.82 314 52 11 319 3.33 330 53 10 276 3.50 286 54 9 296 2.95 305 55 8 279 2.79 287 56 9 268 3.25 277 57 8 245 3.16 253 58 5 270 1.82 275 59 9 278 3.14 287 60 9 267 3.26 276 61 10 258 3.73 268 62 7 233 2.92 240 63 6 245 2.39 251 64 7 264 2.58 271 65 5 228 2.15 233 66 14 252 5.26 266 67 3 234 1.27 237 68 10 210 4.55 220 69 10 226 4.24 236 70 4 197 1.99 201 71 7 208 3.26 215 72 5 213 2.29 218 73 4 174 2.25 178 74 6 209 2.79 215 75 6 198 2.94 204 76 5 160 3.03 165 77 3 175 1.69 178 78 5 187 2.60 192 79 2 174 1.14 176 80 3 156 1.89 159 81 3 166 1.78 169 82 8 152 5.00 160 83 5 145 3.33 150 84 0 149 0.00 149 85 5 144 3.36 149 86 1 132 0.75 133 87 6 120 4.76 126 88 3 145 2.03 148 89 4 132 2.94 136 90 3 134 2.19 137 91 4 118 3.28 122 92 5 121 3.97 126 93 4 131 2.96 135 94 4 138 2.82 142 95 1 110 0.90 111 96 2 115 1.71 117 97 9 94 8.74 103 98 3 115 2.54 118 99 4 107 3.60 111 100 4 103 3.74 107 101 6 104 5.45 110 102 2 77 2.53 79 103 2 77 2.53 79 104 3 91 3.19 94 105 1 98 1.01 99 106 2 75 2.60 77 107 0 77 0.00 77 108 2 90 2.17 92 109 1 80 1.23 81 110 0 64 0.00 64 111 0 67 0.00 67 112 1 56 1.75 57 113 5 74 6.33 79 114 1 67 1.47 68 115 2 77 2.53 79 116 1 76 1.30 77 117 0 60 0.00 60 118 0 65 0.00 65 119 0 65 0.00 65 120 1 57 1.72 58 121 1 66 1.49 67 122 1 68 1.45 69 123 2 57 3.39 59 124 0 48 0.00 48 125 1 59 1.67 60 126 1 54 1.82 55 127 2 46 4.17 48 128 1 56 1.75 57 129 2 51 3.77 53 130 2 47 4.08 49 131 2 31 6.06 33 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 273 1070 20.33 1343 2 263 1082 19.55 1345 3 258 1084 19.23 1342 4 269 1002 21.16 1271 5 272 1046 20.64 1318 6 248 1022 19.53 1270 7 262 1023 20.39 1285 8 256 1024 20.00 1280 9 277 1015 21.44 1292 10 300 1011 22.88 1311 11 272 1091 19.96 1363 12 269 1055 20.32 1324 13 282 1118 20.14 1400 14 284 1067 21.02 1351 15 251 1091 18.70 1342 16 264 1075 19.72 1339 17 253 1108 18.59 1361 18 286 1156 19.83 1442 19 294 1140 20.50 1434 20 269 1134 19.17 1403 21 264 1148 18.70 1412 22 258 1147 18.36 1405 23 289 1131 20.35 1420 24 278 1130 19.74 1408 25 263 1149 18.63 1412 26 236 1152 17.00 1388 27 261 1111 19.02 1372 28 279 1117 19.99 1396 29 263 1036 20.25 1299 30 253 1122 18.40 1375 31 257 1047 19.71 1304 32 249 1063 18.98 1312 33 256 1085 19.09 1341 34 226 1063 17.53 1289 35 218 1072 16.90 1290 36 214 1026 17.26 1240 37 223 1067 17.29 1290 38 229 1026 18.25 1255 39 206 1010 16.94 1216 40 187 1033 15.33 1220 41 197 980 16.74 1177 42 190 1035 15.51 1225 43 200 927 17.75 1127 44 174 899 16.22 1073 45 166 931 15.13 1097 46 164 936 14.91 1100 47 173 904 16.06 1077 48 171 935 15.46 1106 49 176 900 16.36 1076 50 147 889 14.19 1036 51 145 861 14.41 1006 52 160 819 16.34 979 53 168 794 17.46 962 54 154 796 16.21 950 55 144 807 15.14 951 56 138 810 14.56 948 57 125 781 13.80 906 58 154 794 16.24 948 59 126 768 14.09 894 60 116 766 13.15 882 61 115 691 14.27 806 62 113 724 13.50 837 63 106 745 12.46 851 64 107 669 13.79 776 65 92 678 11.95 770 66 95 652 12.72 747 67 97 625 13.43 722 68 107 573 15.74 680 69 86 593 12.67 679 70 98 581 14.43 679 71 75 607 11.00 682 72 84 558 13.08 642 73 82 573 12.52 655 74 87 584 12.97 671 75 78 545 12.52 623 76 75 536 12.27 611 77 66 520 11.26 586 78 87 578 13.08 665 79 73 521 12.29 594 80 68 523 11.51 591 81 59 508 10.41 567 82 78 502 13.45 580 83 69 474 12.71 543 84 69 433 13.75 502 85 47 451 9.44 498 86 62 414 13.03 476 87 61 436 12.27 497 88 59 399 12.88 458 89 57 389 12.78 446 90 63 367 14.65 430 91 50 386 11.47 436 92 60 391 13.30 451 93 44 372 10.58 416 94 64 342 15.76 406 95 50 327 13.26 377 96 44 345 11.31 389 97 44 387 10.21 431 98 44 322 12.02 366 99 38 320 10.61 358 100 34 315 9.74 349 101 34 300 10.18 334 102 40 302 11.70 342 103 34 301 10.15 335 104 40 308 11.49 348 105 35 288 10.84 323 106 38 286 11.73 324 107 30 294 9.26 324 108 43 217 16.54 260 109 23 270 7.85 293 110 32 242 11.68 274 111 30 243 10.99 273 112 34 253 11.85 287 113 26 225 10.36 251 114 37 231 13.81 268 115 28 230 10.85 258 116 37 221 14.34 258 117 20 218 8.40 238 118 28 197 12.44 225 119 23 216 9.62 239 120 32 194 14.16 226 121 15 179 7.73 194 122 28 177 13.66 205 123 27 176 13.30 203 124 24 185 11.48 209 125 16 204 7.27 220 126 22 173 11.28 195 127 21 151 12.21 172 128 23 188 10.90 211 129 17 162 9.50 179 130 12 148 7.50 160 131 8 108 6.90 116 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18 8 69.23 26 2 22 11 66.67 33 3 31 10 75.61 41 4 17 10 62.96 27 5 22 6 78.57 28 6 22 9 70.97 31 7 17 15 53.12 32 8 18 12 60.00 30 9 21 9 70.00 30 10 25 11 69.44 36 11 19 11 63.33 30 12 21 7 75.00 28 13 25 8 75.76 33 14 20 12 62.50 32 15 13 10 56.52 23 16 18 6 75.00 24 17 16 7 69.57 23 18 13 4 76.47 17 19 14 5 73.68 19 20 15 8 65.22 23 21 14 6 70.00 20 22 10 5 66.67 15 23 7 6 53.85 13 24 13 5 72.22 18 25 14 9 60.87 23 26 7 3 70.00 10 27 8 4 66.67 12 28 7 6 53.85 13 29 16 3 84.21 19 30 8 1 88.89 9 31 9 6 60.00 15 32 15 2 88.24 17 33 7 5 58.33 12 34 9 3 75.00 12 35 9 8 52.94 17 36 8 4 66.67 12 37 7 3 70.00 10 38 10 3 76.92 13 39 5 2 71.43 7 40 9 3 75.00 12 41 9 2 81.82 11 42 11 6 64.71 17 43 6 3 66.67 9 44 11 0 100.00 11 45 12 4 75.00 16 46 10 1 90.91 11 47 6 1 85.71 7 48 5 3 62.50 8 49 4 5 44.44 9 50 7 4 63.64 11 51 2 3 40.00 5 52 4 3 57.14 7 53 8 4 66.67 12 54 3 1 75.00 4 55 5 3 62.50 8 56 7 3 70.00 10 57 3 2 60.00 5 58 5 0 100.00 5 59 2 4 33.33 6 60 9 4 69.23 13 61 1 2 33.33 3 62 4 1 80.00 5 63 3 0 100.00 3 64 7 0 100.00 7 65 2 1 66.67 3 66 0 0 0 67 4 3 57.14 7 68 2 1 66.67 3 69 3 1 75.00 4 70 3 1 75.00 4 71 3 1 75.00 4 72 4 1 80.00 5 73 5 4 55.56 9 74 2 2 50.00 4 75 3 2 60.00 5 76 3 2 60.00 5 77 1 1 50.00 2 78 1 1 50.00 2 79 3 1 75.00 4 80 8 2 80.00 10 81 3 0 100.00 3 82 4 3 57.14 7 83 4 0 100.00 4 84 2 3 40.00 5 85 3 1 75.00 4 86 2 2 50.00 4 87 2 1 66.67 3 88 1 3 25.00 4 89 2 0 100.00 2 90 2 2 50.00 4 91 6 1 85.71 7 92 5 1 83.33 6 93 2 0 100.00 2 94 2 1 66.67 3 95 2 0 100.00 2 96 0 1 0.00 1 97 2 1 66.67 3 98 2 2 50.00 4 99 2 2 50.00 4 100 3 3 50.00 6 101 0 2 0.00 2 102 1 1 50.00 2 103 2 0 100.00 2 104 2 0 100.00 2 105 1 1 50.00 2 106 1 0 100.00 1 107 0 0 0 108 1 0 100.00 1 109 1 0 100.00 1 110 0 1 0.00 1 111 3 1 75.00 4 112 1 0 100.00 1 113 0 1 0.00 1 114 2 0 100.00 2 115 1 0 100.00 1 116 0 0 0 117 1 1 50.00 2 118 0 2 0.00 2 119 0 2 0.00 2 120 3 0 100.00 3 121 0 1 0.00 1 122 0 0 0 123 1 0 100.00 1 124 1 0 100.00 1 125 1 0 100.00 1 126 0 0 0 127 1 0 100.00 1 128 1 0 100.00 1 129 1 0 100.00 1 130 0 1 0.00 1 131 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 44 2.22 45 2 3 51 5.56 54 3 4 51 7.27 55 4 3 50 5.66 53 5 0 36 0.00 36 6 0 38 0.00 38 7 3 45 6.25 48 8 2 57 3.39 59 9 2 32 5.88 34 10 0 31 0.00 31 11 2 47 4.08 49 12 3 54 5.26 57 13 0 38 0.00 38 14 1 48 2.04 49 15 0 32 0.00 32 16 0 29 0.00 29 17 0 34 0.00 34 18 0 33 0.00 33 19 2 33 5.71 35 20 1 25 3.85 26 21 0 28 0.00 28 22 0 20 0.00 20 23 1 26 3.70 27 24 1 27 3.57 28 25 0 18 0.00 18 26 0 24 0.00 24 27 0 14 0.00 14 28 0 22 0.00 22 29 0 14 0.00 14 30 1 24 4.00 25 31 1 15 6.25 16 32 0 22 0.00 22 33 0 16 0.00 16 34 0 16 0.00 16 35 0 17 0.00 17 36 0 14 0.00 14 37 0 19 0.00 19 38 0 10 0.00 10 39 0 14 0.00 14 40 0 11 0.00 11 41 2 7 22.22 9 42 1 13 7.14 14 43 0 16 0.00 16 44 0 7 0.00 7 45 0 11 0.00 11 46 0 15 0.00 15 47 0 12 0.00 12 48 1 7 12.50 8 49 0 9 0.00 9 50 0 14 0.00 14 51 0 12 0.00 12 52 0 4 0.00 4 53 0 8 0.00 8 54 2 14 12.50 16 55 0 5 0.00 5 56 1 8 11.11 9 57 0 8 0.00 8 58 0 14 0.00 14 59 0 9 0.00 9 60 0 5 0.00 5 61 0 5 0.00 5 62 0 6 0.00 6 63 0 9 0.00 9 64 0 9 0.00 9 65 2 8 20.00 10 66 1 7 12.50 8 67 0 6 0.00 6 68 0 9 0.00 9 69 0 5 0.00 5 70 0 3 0.00 3 71 0 5 0.00 5 72 1 7 12.50 8 73 0 7 0.00 7 74 0 4 0.00 4 75 0 5 0.00 5 76 0 4 0.00 4 77 0 2 0.00 2 78 0 4 0.00 4 79 0 2 0.00 2 80 1 5 16.67 6 81 0 2 0.00 2 82 0 3 0.00 3 83 0 6 0.00 6 84 0 5 0.00 5 85 0 7 0.00 7 86 0 4 0.00 4 87 0 3 0.00 3 88 0 5 0.00 5 89 0 4 0.00 4 90 0 2 0.00 2 91 0 5 0.00 5 92 0 2 0.00 2 93 0 4 0.00 4 94 0 3 0.00 3 95 0 5 0.00 5 96 0 2 0.00 2 97 0 2 0.00 2 98 0 3 0.00 3 99 0 3 0.00 3 100 1 0 100.00 1 101 0 2 0.00 2 102 0 3 0.00 3 103 0 2 0.00 2 104 0 4 0.00 4 105 0 3 0.00 3 106 0 0 0 107 0 3 0.00 3 108 0 2 0.00 2 109 0 3 0.00 3 110 0 0 0 111 0 0 0 112 0 2 0.00 2 113 0 4 0.00 4 114 0 1 0.00 1 115 0 0 0 116 0 1 0.00 1 117 0 1 0.00 1 118 0 3 0.00 3 119 0 4 0.00 4 120 0 2 0.00 2 121 0 1 0.00 1 122 0 1 0.00 1 123 0 2 0.00 2 124 0 0 0 125 0 1 0.00 1 126 0 0 0 127 0 0 0 128 0 1 0.00 1 129 0 0 0 130 0 0 0 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30 139 17.75 169 2 16 166 8.79 182 3 34 159 17.62 193 4 17 167 9.24 184 5 17 138 10.97 155 6 8 116 6.45 124 7 24 130 15.58 154 8 13 132 8.97 145 9 24 133 15.29 157 10 13 113 10.32 126 11 20 114 14.93 134 12 13 118 9.92 131 13 21 113 15.67 134 14 12 106 10.17 118 15 23 128 15.23 151 16 16 109 12.80 125 17 19 85 18.27 104 18 15 79 15.96 94 19 20 86 18.87 106 20 16 98 14.04 114 21 20 78 20.41 98 22 10 86 10.42 96 23 16 77 17.20 93 24 13 79 14.13 92 25 23 73 23.96 96 26 16 72 18.18 88 27 20 77 20.62 97 28 16 84 16.00 100 29 18 66 21.43 84 30 13 69 15.85 82 31 14 72 16.28 86 32 10 59 14.49 69 33 13 63 17.11 76 34 14 57 19.72 71 35 19 62 23.46 81 36 11 57 16.18 68 37 15 49 23.44 64 38 13 55 19.12 68 39 15 57 20.83 72 40 15 48 23.81 63 41 15 41 26.79 56 42 13 53 19.70 66 43 12 60 16.67 72 44 11 68 13.92 79 45 21 47 30.88 68 46 14 57 19.72 71 47 11 48 18.64 59 48 11 51 17.74 62 49 12 46 20.69 58 50 11 43 20.37 54 51 15 53 22.06 68 52 9 54 14.29 63 53 14 39 26.42 53 54 8 42 16.00 50 55 13 50 20.63 63 56 10 38 20.83 48 57 14 36 28.00 50 58 9 32 21.95 41 59 12 39 23.53 51 60 9 35 20.45 44 61 12 38 24.00 50 62 6 39 13.33 45 63 12 29 29.27 41 64 6 33 15.38 39 65 11 36 23.40 47 66 9 23 28.12 32 67 10 40 20.00 50 68 5 28 15.15 33 69 10 30 25.00 40 70 5 33 13.16 38 71 10 29 25.64 39 72 9 28 24.32 37 73 7 28 20.00 35 74 6 31 16.22 37 75 9 31 22.50 40 76 7 26 21.21 33 77 7 27 20.59 34 78 7 26 21.21 33 79 6 23 20.69 29 80 6 28 17.65 34 81 5 20 20.00 25 82 7 27 20.59 34 83 4 21 16.00 25 84 7 25 21.88 32 85 4 28 12.50 32 86 5 35 12.50 40 87 5 20 20.00 25 88 5 25 16.67 30 89 5 22 18.52 27 90 7 22 24.14 29 91 4 20 16.67 24 92 5 25 16.67 30 93 3 18 14.29 21 94 6 23 20.69 29 95 3 24 11.11 27 96 5 22 18.52 27 97 3 20 13.04 23 98 5 17 22.73 22 99 2 16 11.11 18 100 6 20 23.08 26 101 4 22 15.38 26 102 5 19 20.83 24 103 2 23 8.00 25 104 5 20 20.00 25 105 2 17 10.53 19 106 4 17 19.05 21 107 5 16 23.81 21 108 4 17 19.05 21 109 3 16 15.79 19 110 2 19 9.52 21 111 4 15 21.05 19 112 4 13 23.53 17 113 5 13 27.78 18 114 2 15 11.76 17 115 4 17 19.05 21 116 4 11 26.67 15 117 4 16 20.00 20 118 2 16 11.11 18 119 4 11 26.67 15 120 2 12 14.29 14 121 5 12 29.41 17 122 1 17 5.56 18 123 4 13 23.53 17 124 2 16 11.11 18 125 3 13 18.75 16 126 0 13 0.00 13 127 4 9 30.77 13 128 3 14 17.65 17 129 3 7 30.00 10 130 0 12 0.00 12 131 1 0 100.00 1