/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11687
Pairs without alignments under any condition
23634
Pairs that did not map uniquely
4679
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
383896
Methylated C's in CpG context
42532
Methylated C's in CHG context
2490
Methylated C's in CHH context
38281
Methylated C's in Unknown context
589
Unmethylated C's in CpG context
16123
Unmethylated C's in CHG context
74868
Unmethylated C's in CHH context
209602
Unmethylated C's in Unknown context
1273
Percentage methylation (CpG context)
72.5%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
15.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5875
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5812
original bottom strand
Deduplication
Alignments analysed
11687
Unique alignments
9830
Duplicates removed
1857
Duplicated alignments were found at 1493 different positions
