CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 211 108 66.14 319 2 237 112 67.91 349 3 200 73 73.26 273 4 210 96 68.63 306 5 201 98 67.22 299 6 192 94 67.13 286 7 183 80 69.58 263 8 178 96 64.96 274 9 194 114 62.99 308 10 192 97 66.44 289 11 186 87 68.13 273 12 202 100 66.89 302 13 201 103 66.12 304 14 225 98 69.66 323 15 197 91 68.40 288 16 231 90 71.96 321 17 201 93 68.37 294 18 226 97 69.97 323 19 205 88 69.97 293 20 211 86 71.04 297 21 197 74 72.69 271 22 211 96 68.73 307 23 218 100 68.55 318 24 217 83 72.33 300 25 198 102 66.00 300 26 201 90 69.07 291 27 219 95 69.75 314 28 208 86 70.75 294 29 198 87 69.47 285 30 224 112 66.67 336 31 195 107 64.57 302 32 183 75 70.93 258 33 220 99 68.97 319 34 184 84 68.66 268 35 203 104 66.12 307 36 180 90 66.67 270 37 197 84 70.11 281 38 204 96 68.00 300 39 184 85 68.40 269 40 195 91 68.18 286 41 194 86 69.29 280 42 175 72 70.85 247 43 183 98 65.12 281 44 187 62 75.10 249 45 198 83 70.46 281 46 182 60 75.21 242 47 164 88 65.08 252 48 171 60 74.03 231 49 170 69 71.13 239 50 177 68 72.24 245 51 182 60 75.21 242 52 160 70 69.57 230 53 174 73 70.45 247 54 158 65 70.85 223 55 160 65 71.11 225 56 170 75 69.39 245 57 147 54 73.13 201 58 148 66 69.16 214 59 133 61 68.56 194 60 120 49 71.01 169 61 147 49 75.00 196 62 130 58 69.15 188 63 106 64 62.35 170 64 128 54 70.33 182 65 132 53 71.35 185 66 131 69 65.50 200 67 136 62 68.69 198 68 113 43 72.44 156 69 121 59 67.22 180 70 107 48 69.03 155 71 101 62 61.96 163 72 122 33 78.71 155 73 111 56 66.47 167 74 99 39 71.74 138 75 117 44 72.67 161 76 96 44 68.57 140 77 84 48 63.64 132 78 92 52 63.89 144 79 98 40 71.01 138 80 90 32 73.77 122 81 92 53 63.45 145 82 104 31 77.04 135 83 71 31 69.61 102 84 78 41 65.55 119 85 92 33 73.60 125 86 69 34 66.99 103 87 82 39 67.77 121 88 80 35 69.57 115 89 71 40 63.96 111 90 72 40 64.29 112 91 76 42 64.41 118 92 66 22 75.00 88 93 71 27 72.45 98 94 69 24 74.19 93 95 58 29 66.67 87 96 48 30 61.54 78 97 56 30 65.12 86 98 58 37 61.05 95 99 59 21 73.75 80 100 52 20 72.22 72 101 59 30 66.29 89 102 55 17 76.39 72 103 58 23 71.60 81 104 50 36 58.14 86 105 51 24 68.00 75 106 63 25 71.59 88 107 57 26 68.67 83 108 49 18 73.13 67 109 43 29 59.72 72 110 50 20 71.43 70 111 36 24 60.00 60 112 49 16 75.38 65 113 40 21 65.57 61 114 37 17 68.52 54 115 40 22 64.52 62 116 31 17 64.58 48 117 36 25 59.02 61 118 41 17 70.69 58 119 32 21 60.38 53 120 29 22 56.86 51 121 42 25 62.69 67 122 26 13 66.67 39 123 28 18 60.87 46 124 27 13 67.50 40 125 26 18 59.09 44 126 34 9 79.07 43 127 27 12 69.23 39 128 18 9 66.67 27 129 27 13 67.50 40 130 17 12 58.62 29 131 13 10 56.52 23 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 100 324 23.58 424 2 26 391 6.24 417 3 13 401 3.14 414 4 23 353 6.12 376 5 28 382 6.83 410 6 16 359 4.27 375 7 17 382 4.26 399 8 20 401 4.75 421 9 20 354 5.35 374 10 22 371 5.60 393 11 21 389 5.12 410 12 22 367 5.66 389 13 11 377 2.84 388 14 6 356 1.66 362 15 16 385 3.99 401 16 9 371 2.37 380 17 10 361 2.70 371 18 11 358 2.98 369 19 18 370 4.64 388 20 9 374 2.35 383 21 15 375 3.85 390 22 19 380 4.76 399 23 9 394 2.23 403 24 14 352 3.83 366 25 9 375 2.34 384 26 11 401 2.67 412 27 16 392 3.92 408 28 17 358 4.53 375 29 17 364 4.46 381 30 12 381 3.05 393 31 23 371 5.84 394 32 17 374 4.35 391 33 11 345 3.09 356 34 12 347 3.34 359 35 12 348 3.33 360 36 16 387 3.97 403 37 12 333 3.48 345 38 6 331 1.78 337 39 9 375 2.34 384 40 13 313 3.99 326 41 13 335 3.74 348 42 18 353 4.85 371 43 8 312 2.50 320 44 17 349 4.64 366 45 10 317 3.06 327 46 9 327 2.68 336 47 11 290 3.65 301 48 12 295 3.91 307 49 3 309 0.96 312 50 8 294 2.65 302 51 11 325 3.27 336 52 13 283 4.39 296 53 7 279 2.45 286 54 9 266 3.27 275 55 13 291 4.28 304 56 4 277 1.42 281 57 10 268 3.60 278 58 8 249 3.11 257 59 4 248 1.59 252 60 10 264 3.65 274 61 12 262 4.38 274 62 12 237 4.82 249 63 6 248 2.36 254 64 12 229 4.98 241 65 6 250 2.34 256 66 8 252 3.08 260 67 7 238 2.86 245 68 7 190 3.55 197 69 8 226 3.42 234 70 7 210 3.23 217 71 2 201 0.99 203 72 11 207 5.05 218 73 8 202 3.81 210 74 5 202 2.42 207 75 8 201 3.83 209 76 4 177 2.21 181 77 5 191 2.55 196 78 4 198 1.98 202 79 8 167 4.57 175 80 8 179 4.28 187 81 7 186 3.63 193 82 3 151 1.95 154 83 8 171 4.47 179 84 9 197 4.37 206 85 8 162 4.71 170 86 6 144 4.00 150 87 11 145 7.05 156 88 4 157 2.48 161 89 3 141 2.08 144 90 3 136 2.16 139 91 5 142 3.40 147 92 5 140 3.45 145 93 6 128 4.48 134 94 8 123 6.11 131 95 4 115 3.36 119 96 4 121 3.20 125 97 3 115 2.54 118 98 1 112 0.88 113 99 3 97 3.00 100 100 5 119 4.03 124 101 5 122 3.94 127 102 3 102 2.86 105 103 2 114 1.72 116 104 4 89 4.30 93 105 1 111 0.89 112 106 0 102 0.00 102 107 1 96 1.03 97 108 5 93 5.10 98 109 3 83 3.49 86 110 1 86 1.15 87 111 3 98 2.97 101 112 0 76 0.00 76 113 1 81 1.22 82 114 3 72 4.00 75 115 6 59 9.23 65 116 2 89 2.20 91 117 3 91 3.19 94 118 1 88 1.12 89 119 2 76 2.56 78 120 1 79 1.25 80 121 3 58 4.92 61 122 1 68 1.45 69 123 1 65 1.52 66 124 1 70 1.41 71 125 2 55 3.51 57 126 2 68 2.86 70 127 0 56 0.00 56 128 4 53 7.02 57 129 2 54 3.57 56 130 1 45 2.17 46 131 1 31 3.12 32 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 300 978 23.47 1278 2 239 969 19.78 1208 3 261 943 21.68 1204 4 291 958 23.30 1249 5 275 1031 21.06 1306 6 251 956 20.80 1207 7 268 981 21.46 1249 8 237 947 20.02 1184 9 281 989 22.13 1270 10 289 993 22.54 1282 11 249 973 20.38 1222 12 299 949 23.96 1248 13 253 1028 19.75 1281 14 301 1041 22.43 1342 15 249 998 19.97 1247 16 275 1028 21.11 1303 17 240 1048 18.63 1288 18 277 1041 21.02 1318 19 261 1082 19.43 1343 20 268 1040 20.49 1308 21 250 1062 19.05 1312 22 250 1053 19.19 1303 23 256 1052 19.57 1308 24 273 1058 20.51 1331 25 239 1036 18.75 1275 26 246 1041 19.11 1287 27 232 1035 18.31 1267 28 273 1083 20.13 1356 29 251 1035 19.52 1286 30 218 982 18.17 1200 31 234 961 19.58 1195 32 220 967 18.53 1187 33 246 984 20.00 1230 34 239 952 20.07 1191 35 175 991 15.01 1166 36 204 949 17.69 1153 37 212 934 18.50 1146 38 204 1022 16.64 1226 39 196 965 16.88 1161 40 191 909 17.36 1100 41 173 922 15.80 1095 42 179 905 16.51 1084 43 198 909 17.89 1107 44 165 894 15.58 1059 45 163 913 15.15 1076 46 168 857 16.39 1025 47 176 856 17.05 1032 48 184 864 17.56 1048 49 181 876 17.12 1057 50 150 832 15.27 982 51 147 819 15.22 966 52 151 796 15.95 947 53 165 794 17.21 959 54 147 772 16.00 919 55 150 786 16.03 936 56 155 744 17.24 899 57 126 737 14.60 863 58 142 767 15.62 909 59 138 721 16.07 859 60 115 713 13.89 828 61 113 676 14.32 789 62 119 686 14.78 805 63 135 725 15.70 860 64 117 684 14.61 801 65 101 668 13.13 769 66 104 659 13.63 763 67 104 641 13.96 745 68 110 641 14.65 751 69 102 613 14.27 715 70 86 662 11.50 748 71 80 613 11.54 693 72 93 635 12.77 728 73 93 599 13.44 692 74 102 585 14.85 687 75 82 561 12.75 643 76 86 526 14.05 612 77 96 532 15.29 628 78 95 542 14.91 637 79 89 520 14.61 609 80 72 526 12.04 598 81 67 521 11.39 588 82 93 488 16.01 581 83 77 476 13.92 553 84 83 470 15.01 553 85 75 468 13.81 543 86 56 463 10.79 519 87 63 439 12.55 502 88 74 472 13.55 546 89 69 452 13.24 521 90 67 431 13.45 498 91 51 426 10.69 477 92 53 439 10.77 492 93 65 435 13.00 500 94 67 413 13.96 480 95 49 415 10.56 464 96 47 394 10.66 441 97 61 380 13.83 441 98 65 376 14.74 441 99 69 361 16.05 430 100 48 360 11.76 408 101 45 353 11.31 398 102 50 329 13.19 379 103 53 339 13.52 392 104 45 300 13.04 345 105 47 329 12.50 376 106 43 286 13.07 329 107 34 312 9.83 346 108 45 322 12.26 367 109 43 285 13.11 328 110 43 275 13.52 318 111 31 285 9.81 316 112 38 257 12.88 295 113 33 270 10.89 303 114 36 262 12.08 298 115 29 266 9.83 295 116 32 258 11.03 290 117 38 239 13.72 277 118 31 229 11.92 260 119 38 220 14.73 258 120 21 195 9.72 216 121 27 227 10.63 254 122 26 214 10.83 240 123 35 205 14.58 240 124 22 202 9.82 224 125 23 210 9.87 233 126 25 204 10.92 229 127 21 179 10.50 200 128 30 190 13.64 220 129 24 171 12.31 195 130 16 180 8.16 196 131 14 127 9.93 141 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20 10 66.67 30 2 35 9 79.55 44 3 66 14 82.50 80 4 19 13 59.38 32 5 19 13 59.38 32 6 19 16 54.29 35 7 17 11 60.71 28 8 21 13 61.76 34 9 21 18 53.85 39 10 29 14 67.44 43 11 28 10 73.68 38 12 26 17 60.47 43 13 20 19 51.28 39 14 20 12 62.50 32 15 33 7 82.50 40 16 27 16 62.79 43 17 23 12 65.71 35 18 16 10 61.54 26 19 19 8 70.37 27 20 11 7 61.11 18 21 14 4 77.78 18 22 17 9 65.38 26 23 12 8 60.00 20 24 13 5 72.22 18 25 15 7 68.18 22 26 15 1 93.75 16 27 12 9 57.14 21 28 10 6 62.50 16 29 9 12 42.86 21 30 12 7 63.16 19 31 14 5 73.68 19 32 12 7 63.16 19 33 14 5 73.68 19 34 8 5 61.54 13 35 15 4 78.95 19 36 14 8 63.64 22 37 7 8 46.67 15 38 9 3 75.00 12 39 9 7 56.25 16 40 16 1 94.12 17 41 4 8 33.33 12 42 15 6 71.43 21 43 8 7 53.33 15 44 10 4 71.43 14 45 7 4 63.64 11 46 11 1 91.67 12 47 16 1 94.12 17 48 11 3 78.57 14 49 10 7 58.82 17 50 8 5 61.54 13 51 7 4 63.64 11 52 4 6 40.00 10 53 5 1 83.33 6 54 7 4 63.64 11 55 6 2 75.00 8 56 7 9 43.75 16 57 4 2 66.67 6 58 5 1 83.33 6 59 4 4 50.00 8 60 5 2 71.43 7 61 8 0 100.00 8 62 5 2 71.43 7 63 5 0 100.00 5 64 6 3 66.67 9 65 5 3 62.50 8 66 4 2 66.67 6 67 5 1 83.33 6 68 3 3 50.00 6 69 4 7 36.36 11 70 3 2 60.00 5 71 5 1 83.33 6 72 3 2 60.00 5 73 2 5 28.57 7 74 3 1 75.00 4 75 1 2 33.33 3 76 7 2 77.78 9 77 2 5 28.57 7 78 2 2 50.00 4 79 0 2 0.00 2 80 6 2 75.00 8 81 3 1 75.00 4 82 1 1 50.00 2 83 3 4 42.86 7 84 1 1 50.00 2 85 0 3 0.00 3 86 2 1 66.67 3 87 1 2 33.33 3 88 0 0 0 89 2 3 40.00 5 90 4 1 80.00 5 91 4 1 80.00 5 92 2 1 66.67 3 93 1 2 33.33 3 94 1 1 50.00 2 95 3 2 60.00 5 96 5 3 62.50 8 97 5 1 83.33 6 98 4 3 57.14 7 99 0 0 0 100 3 0 100.00 3 101 2 0 100.00 2 102 1 0 100.00 1 103 2 3 40.00 5 104 1 0 100.00 1 105 1 0 100.00 1 106 0 1 0.00 1 107 3 1 75.00 4 108 2 2 50.00 4 109 1 1 50.00 2 110 1 1 50.00 2 111 1 1 50.00 2 112 1 3 25.00 4 113 1 2 33.33 3 114 1 1 50.00 2 115 2 0 100.00 2 116 1 2 33.33 3 117 0 0 0 118 0 2 0.00 2 119 1 1 50.00 2 120 1 0 100.00 1 121 2 0 100.00 2 122 2 0 100.00 2 123 1 0 100.00 1 124 0 2 0.00 2 125 0 1 0.00 1 126 0 1 0.00 1 127 2 2 50.00 4 128 3 0 100.00 3 129 0 0 0 130 1 0 100.00 1 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9 52 14.75 61 2 7 43 14.00 50 3 21 72 22.58 93 4 2 101 1.94 103 5 4 52 7.14 56 6 2 61 3.17 63 7 2 63 3.08 65 8 2 86 2.27 88 9 2 46 4.17 48 10 3 44 6.38 47 11 3 55 5.17 58 12 5 65 7.14 70 13 0 71 0.00 71 14 2 59 3.28 61 15 1 63 1.56 64 16 0 62 0.00 62 17 1 44 2.22 45 18 1 46 2.13 47 19 0 38 0.00 38 20 1 35 2.78 36 21 2 26 7.14 28 22 0 28 0.00 28 23 2 33 5.71 35 24 1 23 4.17 24 25 2 28 6.67 30 26 1 38 2.56 39 27 0 30 0.00 30 28 1 18 5.26 19 29 0 29 0.00 29 30 0 31 0.00 31 31 0 25 0.00 25 32 0 19 0.00 19 33 0 32 0.00 32 34 2 16 11.11 18 35 0 33 0.00 33 36 1 33 2.94 34 37 0 26 0.00 26 38 0 20 0.00 20 39 0 29 0.00 29 40 1 20 4.76 21 41 0 22 0.00 22 42 1 23 4.17 24 43 1 31 3.12 32 44 1 18 5.26 19 45 1 21 4.55 22 46 1 18 5.26 19 47 0 16 0.00 16 48 1 14 6.67 15 49 0 21 0.00 21 50 1 15 6.25 16 51 1 12 7.69 13 52 1 22 4.35 23 53 1 17 5.56 18 54 0 17 0.00 17 55 0 20 0.00 20 56 1 17 5.56 18 57 0 14 0.00 14 58 0 9 0.00 9 59 0 10 0.00 10 60 1 8 11.11 9 61 0 13 0.00 13 62 0 14 0.00 14 63 0 12 0.00 12 64 0 7 0.00 7 65 1 11 8.33 12 66 0 12 0.00 12 67 0 20 0.00 20 68 1 9 10.00 10 69 0 12 0.00 12 70 0 11 0.00 11 71 1 3 25.00 4 72 0 7 0.00 7 73 0 9 0.00 9 74 0 12 0.00 12 75 0 9 0.00 9 76 0 5 0.00 5 77 0 9 0.00 9 78 1 8 11.11 9 79 0 10 0.00 10 80 0 7 0.00 7 81 0 5 0.00 5 82 1 8 11.11 9 83 0 9 0.00 9 84 0 9 0.00 9 85 0 5 0.00 5 86 0 2 0.00 2 87 0 6 0.00 6 88 0 7 0.00 7 89 1 4 20.00 5 90 0 9 0.00 9 91 0 6 0.00 6 92 0 6 0.00 6 93 0 9 0.00 9 94 0 8 0.00 8 95 0 5 0.00 5 96 0 2 0.00 2 97 2 7 22.22 9 98 0 6 0.00 6 99 1 5 16.67 6 100 0 5 0.00 5 101 0 5 0.00 5 102 1 4 20.00 5 103 0 10 0.00 10 104 0 5 0.00 5 105 0 2 0.00 2 106 0 7 0.00 7 107 0 5 0.00 5 108 0 4 0.00 4 109 0 3 0.00 3 110 0 1 0.00 1 111 0 4 0.00 4 112 0 3 0.00 3 113 0 4 0.00 4 114 0 3 0.00 3 115 0 3 0.00 3 116 0 6 0.00 6 117 0 1 0.00 1 118 0 2 0.00 2 119 0 4 0.00 4 120 0 2 0.00 2 121 0 0 0 122 0 3 0.00 3 123 0 1 0.00 1 124 0 6 0.00 6 125 0 4 0.00 4 126 0 3 0.00 3 127 0 3 0.00 3 128 0 2 0.00 2 129 0 5 0.00 5 130 0 2 0.00 2 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 168 17.24 203 2 22 183 10.73 205 3 53 154 25.60 207 4 17 199 7.87 216 5 20 144 12.20 164 6 16 139 10.32 155 7 27 134 16.77 161 8 26 134 16.25 160 9 20 173 10.36 193 10 28 140 16.67 168 11 17 143 10.62 160 12 28 163 14.66 191 13 24 173 12.18 197 14 35 217 13.89 252 15 16 179 8.21 195 16 21 172 10.88 193 17 22 126 14.86 148 18 12 103 10.43 115 19 19 112 14.50 131 20 19 108 14.96 127 21 16 115 12.21 131 22 15 109 12.10 124 23 16 109 12.80 125 24 17 110 13.39 127 25 16 105 13.22 121 26 13 98 11.71 111 27 14 85 14.14 99 28 18 90 16.67 108 29 9 111 7.50 120 30 12 90 11.76 102 31 13 82 13.68 95 32 10 79 11.24 89 33 10 87 10.31 97 34 16 93 14.68 109 35 13 87 13.00 100 36 12 84 12.50 96 37 15 90 14.29 105 38 12 96 11.11 108 39 16 76 17.39 92 40 11 84 11.58 95 41 11 85 11.46 96 42 6 72 7.69 78 43 17 79 17.71 96 44 12 71 14.46 83 45 13 86 13.13 99 46 8 69 10.39 77 47 15 85 15.00 100 48 7 69 9.21 76 49 17 64 20.99 81 50 11 63 14.86 74 51 11 64 14.67 75 52 5 67 6.94 72 53 11 67 14.10 78 54 12 61 16.44 73 55 13 64 16.88 77 56 6 52 10.34 58 57 9 58 13.43 67 58 8 67 10.67 75 59 13 52 20.00 65 60 6 54 10.00 60 61 12 50 19.35 62 62 2 56 3.45 58 63 8 52 13.33 60 64 8 58 12.12 66 65 10 45 18.18 55 66 4 51 7.27 55 67 13 38 25.49 51 68 3 54 5.26 57 69 10 33 23.26 43 70 5 46 9.80 51 71 10 34 22.73 44 72 3 53 5.36 56 73 11 26 29.73 37 74 6 42 12.50 48 75 8 38 17.39 46 76 7 34 17.07 41 77 3 37 7.50 40 78 4 35 10.26 39 79 9 33 21.43 42 80 2 41 4.65 43 81 5 28 15.15 33 82 2 33 5.71 35 83 9 40 18.37 49 84 3 39 7.14 42 85 5 34 12.82 39 86 2 30 6.25 32 87 7 39 15.22 46 88 2 34 5.56 36 89 8 34 19.05 42 90 2 32 5.88 34 91 6 29 17.14 35 92 3 30 9.09 33 93 3 30 9.09 33 94 4 33 10.81 37 95 7 27 20.59 34 96 2 19 9.52 21 97 3 33 8.33 36 98 4 25 13.79 29 99 6 27 18.18 33 100 5 30 14.29 35 101 6 20 23.08 26 102 3 26 10.34 29 103 5 21 19.23 26 104 4 24 14.29 28 105 6 19 24.00 25 106 1 28 3.45 29 107 4 26 13.33 30 108 3 26 10.34 29 109 3 20 13.04 23 110 4 28 12.50 32 111 2 17 10.53 19 112 3 24 11.11 27 113 4 23 14.81 27 114 2 27 6.90 29 115 5 21 19.23 26 116 2 23 8.00 25 117 1 18 5.26 19 118 2 17 10.53 19 119 5 13 27.78 18 120 2 20 9.09 22 121 2 17 10.53 19 122 2 18 10.00 20 123 2 9 18.18 11 124 0 16 0.00 16 125 3 12 20.00 15 126 2 18 10.00 20 127 1 13 7.14 14 128 2 18 10.00 20 129 0 9 0.00 9 130 1 16 5.88 17 131 1 4 20.00 5