/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11389
Pairs without alignments under any condition
24502
Pairs that did not map uniquely
4109
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
390514
Methylated C's in CpG context
40925
Methylated C's in CHG context
2928
Methylated C's in CHH context
39564
Methylated C's in Unknown context
580
Unmethylated C's in CpG context
18433
Unmethylated C's in CHG context
76034
Unmethylated C's in CHH context
212630
Unmethylated C's in Unknown context
1250
Percentage methylation (CpG context)
68.9%
Percentage methylation (CHG context)
3.7%
Percentage methylation (CHH context)
15.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5707
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5682
original bottom strand
Deduplication
Alignments analysed
11389
Unique alignments
9280
Duplicates removed
2109
Duplicated alignments were found at 1643 different positions
