/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11972
Pairs without alignments under any condition
22519
Pairs that did not map uniquely
5509
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
440645
Methylated C's in CpG context
25717
Methylated C's in CHG context
2097
Methylated C's in CHH context
47452
Methylated C's in Unknown context
663
Unmethylated C's in CpG context
25259
Unmethylated C's in CHG context
74135
Unmethylated C's in CHH context
265985
Unmethylated C's in Unknown context
1407
Percentage methylation (CpG context)
50.4%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
15.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6003
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5969
original bottom strand
Deduplication
Alignments analysed
11972
Unique alignments
9901
Duplicates removed
2071
Duplicated alignments were found at 1570 different positions
