CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 211 110 65.73 321 2 250 128 66.14 378 3 229 105 68.56 334 4 187 73 71.92 260 5 205 86 70.45 291 6 179 68 72.47 247 7 193 87 68.93 280 8 184 81 69.43 265 9 191 87 68.71 278 10 188 103 64.60 291 11 225 88 71.88 313 12 230 75 75.41 305 13 219 94 69.97 313 14 218 91 70.55 309 15 187 92 67.03 279 16 236 107 68.80 343 17 207 99 67.65 306 18 210 85 71.19 295 19 204 80 71.83 284 20 203 87 70.00 290 21 207 85 70.89 292 22 188 95 66.43 283 23 247 89 73.51 336 24 212 86 71.14 298 25 203 77 72.50 280 26 210 96 68.63 306 27 213 91 70.07 304 28 195 80 70.91 275 29 235 92 71.87 327 30 180 90 66.67 270 31 185 95 66.07 280 32 210 82 71.92 292 33 215 75 74.14 290 34 183 66 73.49 249 35 207 64 76.38 271 36 177 89 66.54 266 37 176 81 68.48 257 38 193 88 68.68 281 39 207 85 70.89 292 40 193 79 70.96 272 41 195 79 71.17 274 42 177 65 73.14 242 43 159 75 67.95 234 44 176 75 70.12 251 45 158 65 70.85 223 46 151 63 70.56 214 47 158 74 68.10 232 48 172 63 73.19 235 49 149 64 69.95 213 50 152 69 68.78 221 51 146 73 66.67 219 52 158 54 74.53 212 53 122 59 67.40 181 54 139 57 70.92 196 55 162 62 72.32 224 56 134 57 70.16 191 57 126 64 66.32 190 58 125 38 76.69 163 59 133 63 67.86 196 60 119 46 72.12 165 61 112 55 67.07 167 62 115 55 67.65 170 63 105 46 69.54 151 64 102 41 71.33 143 65 91 51 64.08 142 66 102 47 68.46 149 67 88 43 67.18 131 68 103 47 68.67 150 69 82 49 62.60 131 70 98 56 63.64 154 71 85 41 67.46 126 72 73 31 70.19 104 73 78 46 62.90 124 74 73 38 65.77 111 75 76 31 71.03 107 76 66 29 69.47 95 77 62 34 64.58 96 78 64 29 68.82 93 79 70 38 64.81 108 80 59 30 66.29 89 81 63 27 70.00 90 82 54 42 56.25 96 83 51 26 66.23 77 84 64 20 76.19 84 85 43 33 56.58 76 86 52 31 62.65 83 87 56 32 63.64 88 88 41 30 57.75 71 89 54 23 70.13 77 90 43 28 60.56 71 91 35 19 64.81 54 92 37 23 61.67 60 93 33 19 63.46 52 94 43 19 69.35 62 95 43 13 76.79 56 96 44 10 81.48 54 97 36 16 69.23 52 98 38 24 61.29 62 99 36 19 65.45 55 100 23 15 60.53 38 101 31 16 65.96 47 102 37 9 80.43 46 103 36 14 72.00 50 104 18 9 66.67 27 105 29 14 67.44 43 106 31 17 64.58 48 107 29 14 67.44 43 108 30 14 68.18 44 109 21 22 48.84 43 110 16 16 50.00 32 111 19 8 70.37 27 112 26 18 59.09 44 113 26 13 66.67 39 114 14 11 56.00 25 115 20 8 71.43 28 116 22 11 66.67 33 117 15 18 45.45 33 118 17 14 54.84 31 119 15 9 62.50 24 120 22 9 70.97 31 121 13 8 61.90 21 122 15 7 68.18 22 123 21 8 72.41 29 124 13 6 68.42 19 125 16 9 64.00 25 126 9 9 50.00 18 127 13 4 76.47 17 128 13 9 59.09 22 129 12 8 60.00 20 130 9 11 45.00 20 131 4 6 40.00 10 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 90 332 21.33 422 2 24 321 6.96 345 3 23 335 6.42 358 4 22 339 6.09 361 5 14 333 4.03 347 6 14 301 4.44 315 7 16 335 4.56 351 8 15 338 4.25 353 9 20 352 5.38 372 10 25 355 6.58 380 11 9 328 2.67 337 12 17 364 4.46 381 13 9 360 2.44 369 14 7 367 1.87 374 15 8 349 2.24 357 16 15 362 3.98 377 17 13 327 3.82 340 18 16 349 4.38 365 19 15 377 3.83 392 20 15 390 3.70 405 21 12 337 3.44 349 22 7 360 1.91 367 23 16 399 3.86 415 24 11 368 2.90 379 25 12 395 2.95 407 26 15 348 4.13 363 27 10 379 2.57 389 28 11 363 2.94 374 29 8 344 2.27 352 30 14 318 4.22 332 31 12 353 3.29 365 32 11 362 2.95 373 33 16 319 4.78 335 34 16 315 4.83 331 35 14 343 3.92 357 36 13 358 3.50 371 37 11 313 3.40 324 38 16 319 4.78 335 39 11 304 3.49 315 40 7 306 2.24 313 41 10 306 3.16 316 42 11 299 3.55 310 43 8 283 2.75 291 44 5 306 1.61 311 45 9 251 3.46 260 46 14 270 4.93 284 47 6 267 2.20 273 48 5 282 1.74 287 49 10 253 3.80 263 50 8 297 2.62 305 51 6 237 2.47 243 52 8 233 3.32 241 53 6 248 2.36 254 54 3 242 1.22 245 55 7 224 3.03 231 56 5 235 2.08 240 57 11 230 4.56 241 58 3 237 1.25 240 59 7 227 2.99 234 60 8 202 3.81 210 61 8 219 3.52 227 62 9 192 4.48 201 63 5 205 2.38 210 64 4 179 2.19 183 65 3 202 1.46 205 66 6 174 3.33 180 67 4 173 2.26 177 68 5 158 3.07 163 69 7 165 4.07 172 70 4 156 2.50 160 71 7 144 4.64 151 72 5 147 3.29 152 73 4 140 2.78 144 74 6 151 3.82 157 75 2 134 1.47 136 76 3 117 2.50 120 77 2 114 1.72 116 78 3 123 2.38 126 79 4 116 3.33 120 80 2 130 1.52 132 81 3 113 2.59 116 82 5 92 5.15 97 83 4 124 3.12 128 84 1 96 1.03 97 85 1 106 0.93 107 86 4 102 3.77 106 87 2 84 2.33 86 88 2 95 2.06 97 89 0 103 0.00 103 90 2 85 2.30 87 91 0 79 0.00 79 92 4 72 5.26 76 93 4 82 4.65 86 94 4 74 5.13 78 95 1 73 1.35 74 96 6 74 7.50 80 97 1 78 1.27 79 98 1 65 1.52 66 99 1 50 1.96 51 100 2 48 4.00 50 101 0 72 0.00 72 102 1 76 1.30 77 103 1 55 1.79 56 104 1 56 1.75 57 105 2 47 4.08 49 106 0 49 0.00 49 107 2 50 3.85 52 108 1 40 2.44 41 109 2 53 3.64 55 110 1 40 2.44 41 111 0 38 0.00 38 112 0 43 0.00 43 113 1 44 2.22 45 114 0 32 0.00 32 115 2 46 4.17 48 116 2 36 5.26 38 117 1 42 2.33 43 118 1 34 2.86 35 119 0 38 0.00 38 120 0 24 0.00 24 121 1 29 3.33 30 122 1 34 2.86 35 123 0 23 0.00 23 124 2 29 6.45 31 125 2 27 6.90 29 126 2 25 7.41 27 127 2 24 7.69 26 128 4 26 13.33 30 129 0 22 0.00 22 130 1 14 6.67 15 131 1 8 11.11 9 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 317 971 24.61 1288 2 251 985 20.31 1236 3 301 950 24.06 1251 4 334 988 25.26 1322 5 339 989 25.53 1328 6 278 1013 21.53 1291 7 327 947 25.67 1274 8 244 1014 19.40 1258 9 281 1052 21.08 1333 10 326 945 25.65 1271 11 335 975 25.57 1310 12 305 1006 23.26 1311 13 315 982 24.29 1297 14 331 1001 24.85 1332 15 332 988 25.15 1320 16 339 1041 24.57 1380 17 309 1099 21.95 1408 18 334 1019 24.69 1353 19 311 1077 22.41 1388 20 339 1045 24.49 1384 21 293 1098 21.06 1391 22 351 1042 25.20 1393 23 295 1080 21.45 1375 24 357 1079 24.86 1436 25 308 1066 22.42 1374 26 331 1048 24.00 1379 27 287 1066 21.21 1353 28 330 1068 23.61 1398 29 287 1032 21.76 1319 30 323 991 24.58 1314 31 276 1011 21.45 1287 32 305 1024 22.95 1329 33 278 1017 21.47 1295 34 288 975 22.80 1263 35 255 983 20.60 1238 36 280 951 22.75 1231 37 242 881 21.55 1123 38 271 946 22.27 1217 39 236 942 20.03 1178 40 270 938 22.35 1208 41 205 890 18.72 1095 42 244 910 21.14 1154 43 210 888 19.13 1098 44 233 852 21.47 1085 45 210 817 20.45 1027 46 233 825 22.02 1058 47 171 796 17.68 967 48 207 810 20.35 1017 49 187 794 19.06 981 50 198 754 20.80 952 51 156 739 17.43 895 52 190 747 20.28 937 53 153 723 17.47 876 54 204 752 21.34 956 55 146 693 17.40 839 56 186 673 21.65 859 57 155 618 20.05 773 58 163 623 20.74 786 59 133 605 18.02 738 60 183 628 22.56 811 61 136 570 19.26 706 62 155 600 20.53 755 63 121 567 17.59 688 64 167 582 22.30 749 65 118 548 17.72 666 66 165 544 23.27 709 67 118 493 19.31 611 68 140 524 21.08 664 69 125 513 19.59 638 70 144 490 22.71 634 71 100 459 17.89 559 72 126 468 21.21 594 73 105 463 18.49 568 74 124 473 20.77 597 75 89 439 16.86 528 76 125 394 24.08 519 77 94 439 17.64 533 78 116 421 21.60 537 79 103 415 19.88 518 80 101 380 21.00 481 81 89 356 20.00 445 82 97 369 20.82 466 83 79 320 19.80 399 84 95 342 21.74 437 85 79 298 20.95 377 86 80 313 20.36 393 87 70 329 17.54 399 88 81 272 22.95 353 89 72 306 19.05 378 90 74 258 22.29 332 91 65 268 19.52 333 92 65 278 18.95 343 93 59 260 18.50 319 94 64 260 19.75 324 95 51 247 17.11 298 96 52 250 17.22 302 97 55 249 18.09 304 98 59 221 21.07 280 99 46 211 17.90 257 100 53 232 18.60 285 101 38 220 14.73 258 102 48 213 18.39 261 103 38 214 15.08 252 104 56 196 22.22 252 105 34 199 14.59 233 106 51 196 20.65 247 107 27 181 12.98 208 108 52 199 20.72 251 109 33 158 17.28 191 110 39 180 17.81 219 111 25 161 13.44 186 112 41 173 19.16 214 113 27 155 14.84 182 114 45 150 23.08 195 115 27 160 14.44 187 116 30 146 17.05 176 117 24 139 14.72 163 118 33 150 18.03 183 119 27 129 17.31 156 120 23 154 12.99 177 121 23 120 16.08 143 122 23 111 17.16 134 123 22 113 16.30 135 124 30 124 19.48 154 125 24 110 17.91 134 126 23 124 15.65 147 127 17 120 12.41 137 128 25 123 16.89 148 129 23 90 20.35 113 130 18 97 15.65 115 131 16 68 19.05 84 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9 9 50.00 18 2 20 6 76.92 26 3 32 10 76.19 42 4 9 17 34.62 26 5 7 11 38.89 18 6 4 14 22.22 18 7 11 11 50.00 22 8 8 18 30.77 26 9 13 7 65.00 20 10 9 7 56.25 16 11 13 11 54.17 24 12 7 10 41.18 17 13 5 6 45.45 11 14 9 7 56.25 16 15 7 11 38.89 18 16 8 5 61.54 13 17 11 6 64.71 17 18 6 3 66.67 9 19 5 6 45.45 11 20 7 6 53.85 13 21 2 3 40.00 5 22 3 3 50.00 6 23 4 4 50.00 8 24 5 4 55.56 9 25 6 4 60.00 10 26 5 2 71.43 7 27 5 2 71.43 7 28 3 6 33.33 9 29 4 5 44.44 9 30 3 3 50.00 6 31 9 3 75.00 12 32 3 4 42.86 7 33 4 7 36.36 11 34 4 2 66.67 6 35 4 8 33.33 12 36 5 2 71.43 7 37 1 5 16.67 6 38 1 2 33.33 3 39 5 4 55.56 9 40 3 2 60.00 5 41 2 5 28.57 7 42 3 0 100.00 3 43 0 3 0.00 3 44 1 1 50.00 2 45 0 2 0.00 2 46 3 2 60.00 5 47 3 2 60.00 5 48 1 2 33.33 3 49 1 4 20.00 5 50 1 2 33.33 3 51 1 2 33.33 3 52 2 3 40.00 5 53 1 2 33.33 3 54 0 5 0.00 5 55 1 1 50.00 2 56 1 1 50.00 2 57 0 2 0.00 2 58 3 1 75.00 4 59 0 3 0.00 3 60 1 0 100.00 1 61 1 1 50.00 2 62 1 2 33.33 3 63 1 3 25.00 4 64 0 1 0.00 1 65 1 2 33.33 3 66 3 0 100.00 3 67 0 4 0.00 4 68 0 2 0.00 2 69 0 1 0.00 1 70 1 2 33.33 3 71 3 1 75.00 4 72 1 1 50.00 2 73 0 1 0.00 1 74 1 1 50.00 2 75 0 0 0 76 2 1 66.67 3 77 0 1 0.00 1 78 0 2 0.00 2 79 2 1 66.67 3 80 1 0 100.00 1 81 2 0 100.00 2 82 2 1 66.67 3 83 0 0 0 84 3 0 100.00 3 85 0 1 0.00 1 86 1 2 33.33 3 87 0 1 0.00 1 88 0 0 0 89 0 1 0.00 1 90 1 1 50.00 2 91 1 1 50.00 2 92 0 0 0 93 1 0 100.00 1 94 2 0 100.00 2 95 0 0 0 96 0 0 0 97 0 0 0 98 1 1 50.00 2 99 1 0 100.00 1 100 0 0 0 101 0 0 0 102 1 0 100.00 1 103 0 0 0 104 0 0 0 105 0 0 0 106 0 1 0.00 1 107 0 0 0 108 0 0 0 109 0 0 0 110 1 0 100.00 1 111 0 0 0 112 0 0 0 113 1 0 100.00 1 114 0 0 0 115 0 0 0 116 1 1 50.00 2 117 0 0 0 118 0 0 0 119 0 1 0.00 1 120 0 0 0 121 0 1 0.00 1 122 0 0 0 123 1 0 100.00 1 124 0 1 0.00 1 125 0 0 0 126 0 0 0 127 1 0 100.00 1 128 0 0 0 129 0 0 0 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 24 11.11 27 2 0 17 0.00 17 3 18 40 31.03 58 4 0 55 0.00 55 5 0 16 0.00 16 6 1 23 4.17 24 7 2 25 7.41 27 8 2 46 4.17 48 9 0 20 0.00 20 10 0 18 0.00 18 11 1 22 4.35 23 12 1 28 3.45 29 13 0 33 0.00 33 14 0 24 0.00 24 15 1 15 6.25 16 16 0 15 0.00 15 17 0 16 0.00 16 18 1 11 8.33 12 19 0 11 0.00 11 20 0 17 0.00 17 21 1 12 7.69 13 22 0 10 0.00 10 23 2 19 9.52 21 24 0 17 0.00 17 25 1 11 8.33 12 26 0 7 0.00 7 27 0 5 0.00 5 28 0 16 0.00 16 29 1 8 11.11 9 30 0 12 0.00 12 31 0 5 0.00 5 32 1 9 10.00 10 33 0 7 0.00 7 34 0 8 0.00 8 35 0 7 0.00 7 36 0 8 0.00 8 37 0 4 0.00 4 38 1 5 16.67 6 39 0 5 0.00 5 40 1 11 8.33 12 41 0 7 0.00 7 42 0 3 0.00 3 43 0 5 0.00 5 44 0 11 0.00 11 45 1 6 14.29 7 46 1 9 10.00 10 47 0 5 0.00 5 48 0 6 0.00 6 49 2 5 28.57 7 50 0 6 0.00 6 51 0 2 0.00 2 52 0 8 0.00 8 53 1 3 25.00 4 54 1 2 33.33 3 55 0 5 0.00 5 56 0 2 0.00 2 57 0 4 0.00 4 58 0 9 0.00 9 59 0 6 0.00 6 60 0 3 0.00 3 61 0 4 0.00 4 62 0 1 0.00 1 63 0 2 0.00 2 64 0 2 0.00 2 65 0 2 0.00 2 66 2 2 50.00 4 67 0 1 0.00 1 68 0 3 0.00 3 69 0 2 0.00 2 70 0 1 0.00 1 71 0 0 0 72 0 5 0.00 5 73 0 2 0.00 2 74 1 4 20.00 5 75 0 4 0.00 4 76 0 2 0.00 2 77 0 4 0.00 4 78 0 0 0 79 0 1 0.00 1 80 0 2 0.00 2 81 0 2 0.00 2 82 0 2 0.00 2 83 0 0 0 84 0 1 0.00 1 85 0 1 0.00 1 86 0 1 0.00 1 87 0 1 0.00 1 88 0 3 0.00 3 89 0 2 0.00 2 90 0 4 0.00 4 91 0 1 0.00 1 92 0 3 0.00 3 93 0 0 0 94 0 1 0.00 1 95 0 0 0 96 0 1 0.00 1 97 0 2 0.00 2 98 0 0 0 99 0 1 0.00 1 100 0 2 0.00 2 101 0 0 0 102 0 1 0.00 1 103 0 0 0 104 0 1 0.00 1 105 0 1 0.00 1 106 0 2 0.00 2 107 0 2 0.00 2 108 0 2 0.00 2 109 0 0 0 110 1 0 100.00 1 111 0 0 0 112 1 3 25.00 4 113 0 0 0 114 0 2 0.00 2 115 0 0 0 116 0 1 0.00 1 117 0 0 0 118 0 1 0.00 1 119 0 1 0.00 1 120 0 1 0.00 1 121 0 0 0 122 0 2 0.00 2 123 0 0 0 124 0 1 0.00 1 125 0 0 0 126 1 0 100.00 1 127 0 0 0 128 0 2 0.00 2 129 0 0 0 130 0 0 0 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 45 89 33.58 134 2 27 87 23.68 114 3 54 85 38.85 139 4 22 82 21.15 104 5 35 79 30.70 114 6 21 72 22.58 93 7 37 75 33.04 112 8 27 80 25.23 107 9 41 92 30.83 133 10 29 70 29.29 99 11 42 72 36.84 114 12 32 67 32.32 99 13 33 90 26.83 123 14 40 88 31.25 128 15 39 97 28.68 136 16 34 85 28.57 119 17 29 93 23.77 122 18 23 62 27.06 85 19 27 59 31.40 86 20 24 52 31.58 76 21 25 59 29.76 84 22 20 54 27.03 74 23 29 61 32.22 90 24 20 61 24.69 81 25 21 63 25.00 84 26 23 49 31.94 72 27 23 52 30.67 75 28 24 60 28.57 84 29 22 70 23.91 92 30 24 61 28.24 85 31 19 62 23.46 81 32 21 44 32.31 65 33 18 52 25.71 70 34 18 49 26.87 67 35 28 46 37.84 74 36 20 48 29.41 68 37 28 53 34.57 81 38 17 41 29.31 58 39 21 49 30.00 70 40 20 40 33.33 60 41 19 57 25.00 76 42 19 43 30.65 62 43 12 52 18.75 64 44 23 45 33.82 68 45 24 48 33.33 72 46 19 41 31.67 60 47 17 49 25.76 66 48 15 41 26.79 56 49 16 44 26.67 60 50 17 39 30.36 56 51 17 47 26.56 64 52 16 30 34.78 46 53 16 44 26.67 60 54 16 37 30.19 53 55 18 33 35.29 51 56 12 31 27.91 43 57 14 41 25.45 55 58 14 29 32.56 43 59 16 35 31.37 51 60 19 39 32.76 58 61 13 34 27.66 47 62 15 31 32.61 46 63 13 35 27.08 48 64 15 30 33.33 45 65 11 33 25.00 44 66 13 37 26.00 50 67 12 32 27.27 44 68 9 36 20.00 45 69 16 27 37.21 43 70 8 28 22.22 36 71 12 32 27.27 44 72 8 28 22.22 36 73 11 30 26.83 41 74 12 33 26.67 45 75 12 32 27.27 44 76 9 27 25.00 36 77 9 28 24.32 37 78 5 25 16.67 30 79 10 27 27.03 37 80 6 26 18.75 32 81 11 27 28.95 38 82 5 21 19.23 26 83 9 26 25.71 35 84 9 22 29.03 31 85 6 29 17.14 35 86 8 26 23.53 34 87 6 29 17.14 35 88 3 23 11.54 26 89 7 26 21.21 33 90 4 24 14.29 28 91 7 25 21.88 32 92 4 25 13.79 29 93 5 23 17.86 28 94 5 21 19.23 26 95 7 18 28.00 25 96 7 26 21.21 33 97 6 20 23.08 26 98 3 21 12.50 24 99 6 22 21.43 28 100 5 19 20.83 24 101 7 22 24.14 29 102 4 21 16.00 25 103 5 22 18.52 27 104 3 23 11.54 26 105 6 20 23.08 26 106 3 20 13.04 23 107 5 18 21.74 23 108 1 22 4.35 23 109 5 15 25.00 20 110 1 21 4.55 22 111 5 17 22.73 22 112 1 16 5.88 17 113 6 17 26.09 23 114 2 20 9.09 22 115 4 14 22.22 18 116 2 18 10.00 20 117 5 16 23.81 21 118 1 22 4.35 23 119 5 16 23.81 21 120 1 22 4.35 23 121 2 12 14.29 14 122 1 19 5.00 20 123 3 13 18.75 16 124 0 19 0.00 19 125 4 11 26.67 15 126 1 19 5.00 20 127 3 11 21.43 14 128 0 19 0.00 19 129 2 8 20.00 10 130 1 17 5.56 18 131 1 0 100.00 1