/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11652
Pairs without alignments under any condition
22565
Pairs that did not map uniquely
5783
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
344906
Methylated C's in CpG context
35429
Methylated C's in CHG context
2289
Methylated C's in CHH context
46367
Methylated C's in Unknown context
802
Unmethylated C's in CpG context
15640
Unmethylated C's in CHG context
61851
Unmethylated C's in CHH context
183330
Unmethylated C's in Unknown context
1440
Percentage methylation (CpG context)
69.4%
Percentage methylation (CHG context)
3.6%
Percentage methylation (CHH context)
20.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5772
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5880
original bottom strand
Deduplication
Alignments analysed
11652
Unique alignments
9702
Duplicates removed
1950
Duplicated alignments were found at 1526 different positions
