/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
8340
Pairs without alignments under any condition
25093
Pairs that did not map uniquely
6567
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
275227
Methylated C's in CpG context
2517
Methylated C's in CHG context
1156
Methylated C's in CHH context
34682
Methylated C's in Unknown context
562
Unmethylated C's in CpG context
28233
Unmethylated C's in CHG context
40274
Unmethylated C's in CHH context
168365
Unmethylated C's in Unknown context
1195
Percentage methylation (CpG context)
8.2%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
17.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4168
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4171
original bottom strand
Deduplication
Alignments analysed
8339
Unique alignments
7013
Duplicates removed
1326
Duplicated alignments were found at 1037 different positions
