/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7412
Pairs without alignments under any condition
27584
Pairs that did not map uniquely
5004
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
252312
Methylated C's in CpG context
2793
Methylated C's in CHG context
1416
Methylated C's in CHH context
32894
Methylated C's in Unknown context
505
Unmethylated C's in CpG context
28059
Unmethylated C's in CHG context
41207
Unmethylated C's in CHH context
145943
Unmethylated C's in Unknown context
966
Percentage methylation (CpG context)
9.1%
Percentage methylation (CHG context)
3.3%
Percentage methylation (CHH context)
18.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3797
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3615
original bottom strand
Deduplication
Alignments analysed
7412
Unique alignments
6031
Duplicates removed
1381
Duplicated alignments were found at 984 different positions
