CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 194 124 61.01 318 2 200 106 65.36 306 3 195 102 65.66 297 4 194 90 68.31 284 5 197 96 67.24 293 6 173 98 63.84 271 7 198 105 65.35 303 8 193 93 67.48 286 9 191 88 68.46 279 10 163 99 62.21 262 11 209 102 67.20 311 12 195 83 70.14 278 13 204 90 69.39 294 14 200 124 61.73 324 15 213 109 66.15 322 16 198 93 68.04 291 17 183 96 65.59 279 18 212 120 63.86 332 19 194 88 68.79 282 20 194 106 64.67 300 21 218 89 71.01 307 22 206 103 66.67 309 23 199 89 69.10 288 24 222 97 69.59 319 25 199 104 65.68 303 26 168 99 62.92 267 27 223 101 68.83 324 28 193 100 65.87 293 29 201 92 68.60 293 30 218 96 69.43 314 31 182 93 66.18 275 32 198 95 67.58 293 33 188 85 68.86 273 34 203 84 70.73 287 35 192 103 65.08 295 36 216 94 69.68 310 37 169 94 64.26 263 38 217 106 67.18 323 39 214 102 67.72 316 40 178 94 65.44 272 41 191 88 68.46 279 42 201 87 69.79 288 43 176 71 71.26 247 44 194 87 69.04 281 45 177 78 69.41 255 46 203 87 70.00 290 47 184 80 69.70 264 48 181 73 71.26 254 49 168 91 64.86 259 50 147 92 61.51 239 51 155 73 67.98 228 52 155 79 66.24 234 53 166 74 69.17 240 54 147 88 62.55 235 55 155 69 69.20 224 56 173 62 73.62 235 57 158 62 71.82 220 58 145 86 62.77 231 59 144 68 67.92 212 60 139 78 64.06 217 61 154 73 67.84 227 62 145 67 68.40 212 63 130 59 68.78 189 64 134 63 68.02 197 65 152 55 73.43 207 66 144 73 66.36 217 67 138 59 70.05 197 68 126 67 65.28 193 69 128 61 67.72 189 70 129 58 68.98 187 71 112 47 70.44 159 72 105 47 69.08 152 73 108 57 65.45 165 74 106 47 69.28 153 75 113 48 70.19 161 76 117 52 69.23 169 77 105 49 68.18 154 78 85 45 65.38 130 79 79 46 63.20 125 80 102 53 65.81 155 81 97 56 63.40 153 82 100 44 69.44 144 83 100 35 74.07 135 84 87 42 67.44 129 85 82 40 67.21 122 86 70 57 55.12 127 87 81 48 62.79 129 88 75 33 69.44 108 89 76 46 62.30 122 90 73 44 62.39 117 91 57 41 58.16 98 92 54 33 62.07 87 93 70 29 70.71 99 94 85 34 71.43 119 95 63 38 62.38 101 96 75 39 65.79 114 97 72 28 72.00 100 98 55 40 57.89 95 99 67 32 67.68 99 100 69 34 66.99 103 101 55 22 71.43 77 102 64 24 72.73 88 103 55 35 61.11 90 104 63 13 82.89 76 105 37 33 52.86 70 106 56 32 63.64 88 107 42 20 67.74 62 108 58 29 66.67 87 109 45 24 65.22 69 110 46 27 63.01 73 111 55 23 70.51 78 112 45 18 71.43 63 113 46 25 64.79 71 114 47 22 68.12 69 115 33 21 61.11 54 116 50 15 76.92 65 117 34 34 50.00 68 118 38 28 57.58 66 119 44 15 74.58 59 120 41 22 65.08 63 121 38 17 69.09 55 122 36 19 65.45 55 123 37 17 68.52 54 124 39 18 68.42 57 125 36 13 73.47 49 126 32 8 80.00 40 127 33 16 67.35 49 128 31 17 64.58 48 129 27 14 65.85 41 130 30 12 71.43 42 131 26 9 74.29 35 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 56 348 13.86 404 2 18 350 4.89 368 3 12 347 3.34 359 4 16 333 4.58 349 5 18 337 5.07 355 6 22 332 6.21 354 7 15 377 3.83 392 8 9 381 2.31 390 9 18 346 4.95 364 10 14 344 3.91 358 11 15 362 3.98 377 12 13 369 3.40 382 13 14 390 3.47 404 14 15 359 4.01 374 15 8 359 2.18 367 16 9 375 2.34 384 17 8 377 2.08 385 18 17 371 4.38 388 19 10 384 2.54 394 20 10 348 2.79 358 21 15 378 3.82 393 22 13 351 3.57 364 23 12 415 2.81 427 24 7 398 1.73 405 25 9 325 2.69 334 26 9 390 2.26 399 27 14 393 3.44 407 28 12 379 3.07 391 29 5 378 1.31 383 30 8 348 2.25 356 31 12 332 3.49 344 32 13 344 3.64 357 33 12 324 3.57 336 34 14 346 3.89 360 35 6 361 1.63 367 36 11 352 3.03 363 37 5 352 1.40 357 38 5 374 1.32 379 39 12 293 3.93 305 40 12 329 3.52 341 41 10 334 2.91 344 42 8 317 2.46 325 43 11 337 3.16 348 44 9 305 2.87 314 45 4 281 1.40 285 46 15 325 4.41 340 47 9 269 3.24 278 48 6 298 1.97 304 49 12 307 3.76 319 50 5 266 1.85 271 51 10 306 3.16 316 52 7 279 2.45 286 53 5 269 1.82 274 54 9 281 3.10 290 55 3 267 1.11 270 56 3 247 1.20 250 57 8 254 3.05 262 58 5 258 1.90 263 59 7 252 2.70 259 60 4 273 1.44 277 61 5 263 1.87 268 62 10 240 4.00 250 63 6 243 2.41 249 64 10 237 4.05 247 65 6 219 2.67 225 66 9 224 3.86 233 67 9 242 3.59 251 68 5 215 2.27 220 69 5 228 2.15 233 70 4 204 1.92 208 71 0 183 0.00 183 72 13 193 6.31 206 73 6 221 2.64 227 74 9 175 4.89 184 75 5 203 2.40 208 76 3 182 1.62 185 77 3 180 1.64 183 78 5 171 2.84 176 79 3 178 1.66 181 80 6 190 3.06 196 81 6 191 3.05 197 82 4 145 2.68 149 83 2 128 1.54 130 84 6 152 3.80 158 85 2 154 1.28 156 86 6 153 3.77 159 87 5 159 3.05 164 88 5 135 3.57 140 89 3 140 2.10 143 90 7 130 5.11 137 91 3 139 2.11 142 92 4 134 2.90 138 93 2 153 1.29 155 94 6 133 4.32 139 95 1 125 0.79 126 96 1 133 0.75 134 97 5 130 3.70 135 98 2 101 1.94 103 99 1 113 0.88 114 100 3 102 2.86 105 101 0 115 0.00 115 102 0 98 0.00 98 103 2 93 2.11 95 104 3 100 2.91 103 105 1 101 0.98 102 106 0 85 0.00 85 107 1 90 1.10 91 108 0 87 0.00 87 109 5 92 5.15 97 110 3 94 3.09 97 111 1 76 1.30 77 112 0 80 0.00 80 113 3 74 3.90 77 114 4 70 5.41 74 115 6 80 6.98 86 116 0 85 0.00 85 117 0 64 0.00 64 118 1 69 1.43 70 119 1 70 1.41 71 120 2 70 2.78 72 121 0 54 0.00 54 122 2 62 3.12 64 123 2 68 2.86 70 124 1 35 2.78 36 125 0 59 0.00 59 126 2 67 2.90 69 127 1 59 1.67 60 128 2 46 4.17 48 129 4 58 6.45 62 130 2 48 4.00 50 131 1 49 2.00 50 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 302 993 23.32 1295 2 212 971 17.92 1183 3 272 996 21.45 1268 4 262 942 21.76 1204 5 264 1014 20.66 1278 6 218 981 18.18 1199 7 262 958 21.48 1220 8 213 976 17.91 1189 9 249 952 20.73 1201 10 257 926 21.72 1183 11 288 942 23.41 1230 12 254 956 20.99 1210 13 258 977 20.89 1235 14 271 951 22.18 1222 15 246 972 20.20 1218 16 233 1020 18.60 1253 17 247 983 20.08 1230 18 265 987 21.17 1252 19 289 1004 22.35 1293 20 251 1013 19.86 1264 21 240 1062 18.43 1302 22 239 1021 18.97 1260 23 244 1015 19.38 1259 24 236 1014 18.88 1250 25 247 1002 19.78 1249 26 226 1042 17.82 1268 27 231 1044 18.12 1275 28 256 1062 19.42 1318 29 219 1025 17.60 1244 30 225 1006 18.28 1231 31 232 1005 18.76 1237 32 231 961 19.38 1192 33 206 984 17.31 1190 34 228 974 18.97 1202 35 210 974 17.74 1184 36 213 983 17.81 1196 37 209 987 17.47 1196 38 214 946 18.45 1160 39 210 888 19.13 1098 40 204 873 18.94 1077 41 191 912 17.32 1103 42 184 944 16.31 1128 43 193 928 17.22 1121 44 190 883 17.71 1073 45 176 881 16.65 1057 46 185 839 18.07 1024 47 168 878 16.06 1046 48 191 814 19.00 1005 49 184 877 17.34 1061 50 175 825 17.50 1000 51 163 795 17.01 958 52 169 768 18.04 937 53 163 847 16.14 1010 54 157 768 16.97 925 55 162 812 16.63 974 56 139 773 15.24 912 57 146 735 16.57 881 58 161 736 17.95 897 59 138 722 16.05 860 60 147 752 16.35 899 61 129 725 15.11 854 62 148 707 17.31 855 63 142 650 17.93 792 64 144 644 18.27 788 65 107 648 14.17 755 66 121 619 16.35 740 67 111 636 14.86 747 68 138 616 18.30 754 69 120 626 16.09 746 70 116 597 16.27 713 71 99 595 14.27 694 72 98 582 14.41 680 73 114 565 16.79 679 74 111 573 16.23 684 75 95 516 15.55 611 76 108 583 15.63 691 77 74 538 12.09 612 78 117 510 18.66 627 79 97 548 15.04 645 80 99 491 16.78 590 81 75 513 12.76 588 82 84 476 15.00 560 83 81 476 14.54 557 84 99 495 16.67 594 85 72 501 12.57 573 86 83 437 15.96 520 87 67 440 13.21 507 88 83 440 15.87 523 89 79 437 15.31 516 90 76 453 14.37 529 91 60 387 13.42 447 92 53 434 10.88 487 93 65 413 13.60 478 94 74 361 17.01 435 95 55 365 13.10 420 96 59 367 13.85 426 97 61 346 14.99 407 98 67 383 14.89 450 99 48 332 12.63 380 100 58 367 13.65 425 101 44 362 10.84 406 102 56 336 14.29 392 103 52 314 14.21 366 104 55 318 14.75 373 105 39 317 10.96 356 106 45 289 13.47 334 107 39 290 11.85 329 108 53 289 15.50 342 109 54 277 16.31 331 110 41 257 13.76 298 111 33 267 11.00 300 112 33 266 11.04 299 113 33 270 10.89 303 114 33 262 11.19 295 115 34 243 12.27 277 116 32 255 11.15 287 117 31 226 12.06 257 118 40 222 15.27 262 119 33 216 13.25 249 120 33 203 13.98 236 121 36 218 14.17 254 122 32 231 12.17 263 123 32 206 13.45 238 124 34 191 15.11 225 125 27 213 11.25 240 126 29 205 12.39 234 127 21 207 9.21 228 128 33 168 16.42 201 129 31 163 15.98 194 130 23 158 12.71 181 131 11 108 9.24 119 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 26 11 70.27 37 2 31 14 68.89 45 3 39 11 78.00 50 4 19 17 52.78 36 5 24 18 57.14 42 6 18 4 81.82 22 7 25 15 62.50 40 8 24 23 51.06 47 9 14 20 41.18 34 10 28 12 70.00 40 11 21 23 47.73 44 12 26 13 66.67 39 13 18 8 69.23 26 14 25 12 67.57 37 15 19 11 63.33 30 16 13 12 52.00 25 17 19 18 51.35 37 18 15 10 60.00 25 19 11 6 64.71 17 20 12 12 50.00 24 21 17 11 60.71 28 22 11 11 50.00 22 23 14 13 51.85 27 24 14 12 53.85 26 25 15 11 57.69 26 26 16 7 69.57 23 27 5 8 38.46 13 28 8 6 57.14 14 29 9 10 47.37 19 30 14 4 77.78 18 31 14 9 60.87 23 32 6 11 35.29 17 33 9 3 75.00 12 34 17 7 70.83 24 35 9 3 75.00 12 36 17 5 77.27 22 37 9 9 50.00 18 38 8 6 57.14 14 39 11 7 61.11 18 40 11 7 61.11 18 41 4 3 57.14 7 42 7 3 70.00 10 43 11 5 68.75 16 44 7 6 53.85 13 45 9 6 60.00 15 46 9 3 75.00 12 47 11 3 78.57 14 48 7 5 58.33 12 49 12 11 52.17 23 50 6 4 60.00 10 51 4 2 66.67 6 52 7 7 50.00 14 53 9 4 69.23 13 54 8 2 80.00 10 55 5 4 55.56 9 56 3 6 33.33 9 57 6 1 85.71 7 58 7 4 63.64 11 59 7 1 87.50 8 60 4 3 57.14 7 61 3 3 50.00 6 62 2 2 50.00 4 63 5 3 62.50 8 64 5 7 41.67 12 65 2 1 66.67 3 66 5 6 45.45 11 67 2 3 40.00 5 68 2 2 50.00 4 69 6 2 75.00 8 70 2 6 25.00 8 71 4 1 80.00 5 72 2 3 40.00 5 73 7 2 77.78 9 74 3 2 60.00 5 75 3 2 60.00 5 76 4 3 57.14 7 77 3 1 75.00 4 78 2 1 66.67 3 79 2 5 28.57 7 80 5 2 71.43 7 81 1 1 50.00 2 82 1 3 25.00 4 83 4 0 100.00 4 84 2 1 66.67 3 85 3 4 42.86 7 86 2 2 50.00 4 87 2 0 100.00 2 88 2 2 50.00 4 89 2 1 66.67 3 90 1 2 33.33 3 91 0 4 0.00 4 92 2 0 100.00 2 93 0 1 0.00 1 94 2 1 66.67 3 95 1 0 100.00 1 96 2 0 100.00 2 97 1 2 33.33 3 98 2 0 100.00 2 99 0 0 0 100 1 1 50.00 2 101 2 1 66.67 3 102 1 1 50.00 2 103 2 0 100.00 2 104 4 1 80.00 5 105 1 0 100.00 1 106 2 1 66.67 3 107 3 2 60.00 5 108 2 0 100.00 2 109 1 1 50.00 2 110 1 2 33.33 3 111 1 1 50.00 2 112 0 3 0.00 3 113 3 3 50.00 6 114 1 1 50.00 2 115 0 0 0 116 0 1 0.00 1 117 0 0 0 118 1 1 50.00 2 119 1 1 50.00 2 120 2 2 50.00 4 121 0 0 0 122 1 1 50.00 2 123 3 1 75.00 4 124 1 1 50.00 2 125 0 0 0 126 1 2 33.33 3 127 0 0 0 128 2 2 50.00 4 129 1 1 50.00 2 130 1 0 100.00 1 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 55 3.51 57 2 2 59 3.28 61 3 11 70 13.58 81 4 2 72 2.70 74 5 1 58 1.69 59 6 1 46 2.13 47 7 0 35 0.00 35 8 1 83 1.19 84 9 1 47 2.08 48 10 1 43 2.27 44 11 2 57 3.39 59 12 1 54 1.82 55 13 1 51 1.92 52 14 2 50 3.85 52 15 1 40 2.44 41 16 0 40 0.00 40 17 2 52 3.70 54 18 2 36 5.26 38 19 1 35 2.78 36 20 0 25 0.00 25 21 0 32 0.00 32 22 1 26 3.70 27 23 1 31 3.12 32 24 0 29 0.00 29 25 0 21 0.00 21 26 0 34 0.00 34 27 1 27 3.57 28 28 1 23 4.17 24 29 1 27 3.57 28 30 1 18 5.26 19 31 0 25 0.00 25 32 0 32 0.00 32 33 0 25 0.00 25 34 0 21 0.00 21 35 0 19 0.00 19 36 0 16 0.00 16 37 0 20 0.00 20 38 1 18 5.26 19 39 1 20 4.76 21 40 0 27 0.00 27 41 0 15 0.00 15 42 1 17 5.56 18 43 0 12 0.00 12 44 1 26 3.70 27 45 0 18 0.00 18 46 0 15 0.00 15 47 1 15 6.25 16 48 1 17 5.56 18 49 0 14 0.00 14 50 0 18 0.00 18 51 1 12 7.69 13 52 2 8 20.00 10 53 0 12 0.00 12 54 1 7 12.50 8 55 0 16 0.00 16 56 1 14 6.67 15 57 0 8 0.00 8 58 0 13 0.00 13 59 0 13 0.00 13 60 0 8 0.00 8 61 0 10 0.00 10 62 1 9 10.00 10 63 0 6 0.00 6 64 0 12 0.00 12 65 1 5 16.67 6 66 0 5 0.00 5 67 0 12 0.00 12 68 0 4 0.00 4 69 0 9 0.00 9 70 0 12 0.00 12 71 1 10 9.09 11 72 0 5 0.00 5 73 0 8 0.00 8 74 0 11 0.00 11 75 0 6 0.00 6 76 0 7 0.00 7 77 0 9 0.00 9 78 0 6 0.00 6 79 0 5 0.00 5 80 0 7 0.00 7 81 0 5 0.00 5 82 0 6 0.00 6 83 0 4 0.00 4 84 0 4 0.00 4 85 0 4 0.00 4 86 1 10 9.09 11 87 0 3 0.00 3 88 0 4 0.00 4 89 0 7 0.00 7 90 0 2 0.00 2 91 0 2 0.00 2 92 0 4 0.00 4 93 0 5 0.00 5 94 0 3 0.00 3 95 0 2 0.00 2 96 0 3 0.00 3 97 0 5 0.00 5 98 0 2 0.00 2 99 0 6 0.00 6 100 0 0 0 101 0 3 0.00 3 102 0 3 0.00 3 103 0 4 0.00 4 104 0 1 0.00 1 105 0 4 0.00 4 106 0 2 0.00 2 107 0 6 0.00 6 108 0 2 0.00 2 109 0 3 0.00 3 110 0 8 0.00 8 111 0 2 0.00 2 112 0 1 0.00 1 113 0 3 0.00 3 114 0 3 0.00 3 115 0 6 0.00 6 116 0 3 0.00 3 117 0 0 0 118 0 1 0.00 1 119 0 2 0.00 2 120 0 2 0.00 2 121 0 4 0.00 4 122 0 1 0.00 1 123 0 2 0.00 2 124 0 4 0.00 4 125 0 1 0.00 1 126 0 0 0 127 0 2 0.00 2 128 0 0 0 129 0 2 0.00 2 130 0 3 0.00 3 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40 156 20.41 196 2 33 165 16.67 198 3 44 165 21.05 209 4 23 189 10.85 212 5 36 153 19.05 189 6 26 123 17.45 149 7 29 142 16.96 171 8 19 124 13.29 143 9 34 138 19.77 172 10 20 152 11.63 172 11 30 152 16.48 182 12 18 160 10.11 178 13 33 157 17.37 190 14 22 147 13.02 169 15 35 153 18.62 188 16 16 135 10.60 151 17 27 132 16.98 159 18 18 107 14.40 125 19 29 122 19.21 151 20 25 117 17.61 142 21 21 97 17.80 118 22 15 90 14.29 105 23 23 107 17.69 130 24 17 97 14.91 114 25 22 83 20.95 105 26 17 108 13.60 125 27 26 82 24.07 108 28 10 101 9.01 111 29 24 102 19.05 126 30 18 87 17.14 105 31 19 72 20.88 91 32 11 94 10.48 105 33 15 82 15.46 97 34 15 100 13.04 115 35 25 81 23.58 106 36 9 88 9.28 97 37 16 71 18.39 87 38 12 69 14.81 81 39 18 75 19.35 93 40 13 74 14.94 87 41 18 80 18.37 98 42 9 74 10.84 83 43 18 71 20.22 89 44 11 72 13.25 83 45 18 65 21.69 83 46 8 63 11.27 71 47 12 60 16.67 72 48 9 63 12.50 72 49 16 59 21.33 75 50 10 66 13.16 76 51 18 61 22.78 79 52 6 60 9.09 66 53 11 47 18.97 58 54 6 55 9.84 61 55 15 59 20.27 74 56 5 58 7.94 63 57 8 52 13.33 60 58 7 56 11.11 63 59 10 48 17.24 58 60 9 58 13.43 67 61 9 58 13.43 67 62 9 49 15.52 58 63 5 46 9.80 51 64 7 55 11.29 62 65 7 47 12.96 54 66 7 51 12.07 58 67 7 47 12.96 54 68 4 46 8.00 50 69 8 42 16.00 50 70 6 43 12.24 49 71 6 42 12.50 48 72 7 36 16.28 43 73 6 42 12.50 48 74 7 42 14.29 49 75 7 39 15.22 46 76 5 43 10.42 48 77 5 44 10.20 49 78 2 41 4.65 43 79 4 39 9.30 43 80 4 33 10.81 37 81 5 38 11.63 43 82 3 32 8.57 35 83 5 31 13.89 36 84 2 29 6.45 31 85 4 35 10.26 39 86 2 30 6.25 32 87 5 34 12.82 39 88 2 32 5.88 34 89 5 33 13.16 38 90 6 28 17.65 34 91 6 26 18.75 32 92 3 21 12.50 24 93 3 20 13.04 23 94 3 21 12.50 24 95 3 22 12.00 25 96 2 26 7.14 28 97 3 27 10.00 30 98 1 23 4.17 24 99 3 33 8.33 36 100 2 26 7.14 28 101 3 22 12.00 25 102 1 24 4.00 25 103 2 31 6.06 33 104 1 22 4.35 23 105 4 25 13.79 29 106 2 19 9.52 21 107 3 21 12.50 24 108 0 20 0.00 20 109 2 30 6.25 32 110 1 18 5.26 19 111 2 18 10.00 20 112 0 23 0.00 23 113 5 21 19.23 26 114 1 17 5.56 18 115 3 27 10.00 30 116 0 16 0.00 16 117 3 25 10.71 28 118 0 23 0.00 23 119 3 19 13.64 22 120 3 16 15.79 19 121 3 16 15.79 19 122 0 17 0.00 17 123 3 12 20.00 15 124 1 18 5.26 19 125 3 16 15.79 19 126 1 18 5.26 19 127 2 13 13.33 15 128 0 14 0.00 14 129 1 12 7.69 13 130 1 14 6.67 15 131 0 1 0.00 1