/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10961
Pairs without alignments under any condition
24453
Pairs that did not map uniquely
4586
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
384102
Methylated C's in CpG context
41302
Methylated C's in CHG context
2207
Methylated C's in CHH context
40387
Methylated C's in Unknown context
604
Unmethylated C's in CpG context
20246
Unmethylated C's in CHG context
73378
Unmethylated C's in CHH context
206582
Unmethylated C's in Unknown context
1290
Percentage methylation (CpG context)
67.1%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
16.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5491
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5470
original bottom strand
Deduplication
Alignments analysed
10961
Unique alignments
8981
Duplicates removed
1980
Duplicated alignments were found at 1512 different positions
