CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 266 84 76.00 350 2 277 105 72.51 382 3 261 111 70.16 372 4 231 95 70.86 326 5 230 99 69.91 329 6 248 99 71.47 347 7 245 82 74.92 327 8 240 89 72.95 329 9 247 83 74.85 330 10 271 99 73.24 370 11 232 100 69.88 332 12 270 91 74.79 361 13 280 91 75.47 371 14 272 101 72.92 373 15 272 99 73.32 371 16 272 100 73.12 372 17 270 90 75.00 360 18 297 83 78.16 380 19 273 96 73.98 369 20 242 105 69.74 347 21 239 79 75.16 318 22 238 106 69.19 344 23 247 87 73.95 334 24 273 88 75.62 361 25 270 92 74.59 362 26 250 89 73.75 339 27 273 84 76.47 357 28 248 86 74.25 334 29 244 92 72.62 336 30 259 107 70.77 366 31 220 69 76.12 289 32 240 84 74.07 324 33 231 95 70.86 326 34 230 91 71.65 321 35 239 79 75.16 318 36 235 79 74.84 314 37 219 92 70.42 311 38 241 63 79.28 304 39 230 66 77.70 296 40 219 81 73.00 300 41 245 77 76.09 322 42 212 72 74.65 284 43 191 80 70.48 271 44 231 57 80.21 288 45 169 84 66.80 253 46 194 52 78.86 246 47 213 60 78.02 273 48 201 85 70.28 286 49 208 68 75.36 276 50 187 55 77.27 242 51 187 65 74.21 252 52 181 55 76.69 236 53 164 62 72.57 226 54 153 63 70.83 216 55 157 47 76.96 204 56 170 56 75.22 226 57 159 59 72.94 218 58 164 50 76.64 214 59 140 54 72.16 194 60 137 46 74.86 183 61 134 49 73.22 183 62 156 41 79.19 197 63 140 47 74.87 187 64 135 46 74.59 181 65 116 57 67.05 173 66 136 38 78.16 174 67 144 55 72.36 199 68 127 43 74.71 170 69 117 37 75.97 154 70 111 46 70.70 157 71 101 37 73.19 138 72 117 43 73.12 160 73 115 35 76.67 150 74 122 48 71.76 170 75 103 39 72.54 142 76 80 39 67.23 119 77 102 35 74.45 137 78 102 36 73.91 138 79 84 30 73.68 114 80 103 39 72.54 142 81 81 45 64.29 126 82 77 31 71.30 108 83 76 34 69.09 110 84 80 25 76.19 105 85 66 29 69.47 95 86 79 25 75.96 104 87 70 41 63.06 111 88 70 34 67.31 104 89 79 36 68.70 115 90 66 19 77.65 85 91 74 21 77.89 95 92 57 29 66.28 86 93 58 20 74.36 78 94 55 22 71.43 77 95 57 15 79.17 72 96 42 24 63.64 66 97 35 30 53.85 65 98 48 20 70.59 68 99 51 20 71.83 71 100 51 19 72.86 70 101 36 19 65.45 55 102 43 14 75.44 57 103 39 23 62.90 62 104 36 18 66.67 54 105 39 11 78.00 50 106 34 16 68.00 50 107 22 15 59.46 37 108 36 17 67.92 53 109 35 16 68.63 51 110 27 12 69.23 39 111 31 19 62.00 50 112 31 16 65.96 47 113 29 17 63.04 46 114 29 18 61.70 47 115 22 20 52.38 42 116 20 8 71.43 28 117 34 18 65.38 52 118 31 15 67.39 46 119 26 14 65.00 40 120 23 12 65.71 35 121 24 10 70.59 34 122 18 12 60.00 30 123 23 12 65.71 35 124 22 9 70.97 31 125 17 12 58.62 29 126 19 6 76.00 25 127 16 12 57.14 28 128 11 12 47.83 23 129 15 8 65.22 23 130 11 11 50.00 22 131 9 5 64.29 14 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 65 381 14.57 446 2 26 388 6.28 414 3 20 365 5.19 385 4 25 375 6.25 400 5 31 391 7.35 422 6 24 408 5.56 432 7 14 417 3.25 431 8 17 408 4.00 425 9 15 384 3.76 399 10 16 442 3.49 458 11 18 412 4.19 430 12 15 428 3.39 443 13 15 389 3.71 404 14 9 388 2.27 397 15 15 366 3.94 381 16 11 426 2.52 437 17 14 425 3.19 439 18 17 400 4.08 417 19 13 409 3.08 422 20 11 445 2.41 456 21 17 408 4.00 425 22 10 382 2.55 392 23 23 405 5.37 428 24 17 421 3.88 438 25 12 407 2.86 419 26 10 391 2.49 401 27 13 397 3.17 410 28 14 378 3.57 392 29 15 430 3.37 445 30 12 409 2.85 421 31 11 382 2.80 393 32 11 378 2.83 389 33 14 399 3.39 413 34 12 423 2.76 435 35 16 389 3.95 405 36 10 368 2.65 378 37 9 370 2.37 379 38 15 369 3.91 384 39 6 357 1.65 363 40 14 384 3.52 398 41 11 349 3.06 360 42 11 334 3.19 345 43 11 358 2.98 369 44 9 332 2.64 341 45 17 296 5.43 313 46 8 353 2.22 361 47 10 302 3.21 312 48 6 341 1.73 347 49 9 318 2.75 327 50 10 297 3.26 307 51 4 330 1.20 334 52 11 262 4.03 273 53 4 268 1.47 272 54 9 293 2.98 302 55 7 261 2.61 268 56 6 262 2.24 268 57 10 265 3.64 275 58 5 267 1.84 272 59 6 263 2.23 269 60 8 248 3.12 256 61 4 244 1.61 248 62 4 234 1.68 238 63 6 228 2.56 234 64 5 240 2.04 245 65 3 209 1.42 212 66 3 220 1.35 223 67 3 216 1.37 219 68 5 206 2.37 211 69 7 202 3.35 209 70 6 209 2.79 215 71 7 226 3.00 233 72 4 180 2.17 184 73 5 159 3.05 164 74 7 189 3.57 196 75 4 158 2.47 162 76 7 180 3.74 187 77 2 173 1.14 175 78 5 157 3.09 162 79 4 161 2.42 165 80 7 154 4.35 161 81 3 160 1.84 163 82 6 145 3.97 151 83 1 135 0.74 136 84 4 123 3.15 127 85 6 161 3.59 167 86 1 126 0.79 127 87 4 141 2.76 145 88 2 119 1.65 121 89 4 129 3.01 133 90 5 115 4.17 120 91 2 107 1.83 109 92 4 108 3.57 112 93 0 101 0.00 101 94 4 112 3.45 116 95 4 99 3.88 103 96 1 102 0.97 103 97 1 102 0.97 103 98 0 76 0.00 76 99 1 84 1.18 85 100 1 86 1.15 87 101 0 82 0.00 82 102 2 87 2.25 89 103 2 78 2.50 80 104 6 80 6.98 86 105 2 63 3.08 65 106 2 77 2.53 79 107 4 61 6.15 65 108 0 75 0.00 75 109 4 65 5.80 69 110 0 59 0.00 59 111 4 59 6.35 63 112 1 54 1.82 55 113 1 63 1.56 64 114 1 64 1.54 65 115 2 41 4.65 43 116 3 68 4.23 71 117 1 65 1.52 66 118 1 50 1.96 51 119 2 39 4.88 41 120 4 52 7.14 56 121 2 43 4.44 45 122 1 36 2.70 37 123 1 44 2.22 45 124 0 20 0.00 20 125 3 50 5.66 53 126 1 41 2.38 42 127 2 34 5.56 36 128 1 45 2.17 46 129 3 27 10.00 30 130 2 27 6.90 29 131 2 21 8.70 23 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 351 906 27.92 1257 2 309 938 24.78 1247 3 321 915 25.97 1236 4 285 1017 21.89 1302 5 310 960 24.41 1270 6 319 981 24.54 1300 7 315 905 25.82 1220 8 299 941 24.11 1240 9 321 935 25.56 1256 10 330 903 26.76 1233 11 266 926 22.32 1192 12 308 957 24.35 1265 13 342 968 26.11 1310 14 322 1011 24.16 1333 15 312 1039 23.09 1351 16 315 1034 23.35 1349 17 295 977 23.19 1272 18 320 1052 23.32 1372 19 335 1007 24.96 1342 20 312 1078 22.45 1390 21 302 1076 21.92 1378 22 294 1070 21.55 1364 23 308 1002 23.51 1310 24 330 1085 23.32 1415 25 268 1010 20.97 1278 26 313 1053 22.91 1366 27 303 1079 21.92 1382 28 321 1028 23.80 1349 29 328 1046 23.87 1374 30 301 1023 22.73 1324 31 282 959 22.72 1241 32 293 995 22.75 1288 33 297 979 23.28 1276 34 310 989 23.86 1299 35 265 910 22.55 1175 36 264 951 21.73 1215 37 246 925 21.01 1171 38 298 923 24.41 1221 39 259 909 22.17 1168 40 243 881 21.62 1124 41 242 893 21.32 1135 42 246 860 22.24 1106 43 222 911 19.59 1133 44 233 887 20.80 1120 45 214 889 19.40 1103 46 240 829 22.45 1069 47 219 864 20.22 1083 48 237 760 23.77 997 49 217 762 22.17 979 50 201 803 20.02 1004 51 192 784 19.67 976 52 207 761 21.38 968 53 210 733 22.27 943 54 216 730 22.83 946 55 178 689 20.53 867 56 181 746 19.53 927 57 164 676 19.52 840 58 187 655 22.21 842 59 165 683 19.46 848 60 174 670 20.62 844 61 162 660 19.71 822 62 156 642 19.55 798 63 144 605 19.23 749 64 158 578 21.47 736 65 150 548 21.49 698 66 169 579 22.59 748 67 127 556 18.59 683 68 138 567 19.57 705 69 149 488 23.39 637 70 139 531 20.75 670 71 124 503 19.78 627 72 141 521 21.30 662 73 114 451 20.18 565 74 132 477 21.67 609 75 115 476 19.46 591 76 114 461 19.83 575 77 98 443 18.11 541 78 116 454 20.35 570 79 107 452 19.14 559 80 114 414 21.59 528 81 95 412 18.74 507 82 103 412 20.00 515 83 95 367 20.56 462 84 107 391 21.49 498 85 83 368 18.40 451 86 95 360 20.88 455 87 77 360 17.62 437 88 93 319 22.57 412 89 78 329 19.16 407 90 75 309 19.53 384 91 72 316 18.56 388 92 75 288 20.66 363 93 78 313 19.95 391 94 76 288 20.88 364 95 63 278 18.48 341 96 68 289 19.05 357 97 52 240 17.81 292 98 60 244 19.74 304 99 58 251 18.77 309 100 51 250 16.94 301 101 59 214 21.61 273 102 66 205 24.35 271 103 52 215 19.48 267 104 60 207 22.47 267 105 48 209 18.68 257 106 45 193 18.91 238 107 39 212 15.54 251 108 42 190 18.10 232 109 39 195 16.67 234 110 42 197 17.57 239 111 36 193 15.72 229 112 45 178 20.18 223 113 35 159 18.04 194 114 52 149 25.87 201 115 40 155 20.51 195 116 41 153 21.13 194 117 37 139 21.02 176 118 46 127 26.59 173 119 35 133 20.83 168 120 41 127 24.40 168 121 26 141 15.57 167 122 41 123 25.00 164 123 31 133 18.90 164 124 30 119 20.13 149 125 31 132 19.02 163 126 35 118 22.88 153 127 29 128 18.47 157 128 25 92 21.37 117 129 29 96 23.20 125 130 25 78 24.27 103 131 13 84 13.40 97 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 15 10 60.00 25 2 13 11 54.17 24 3 71 11 86.59 82 4 15 19 44.12 34 5 13 13 50.00 26 6 10 4 71.43 14 7 11 11 50.00 22 8 16 9 64.00 25 9 22 13 62.86 35 10 25 14 64.10 39 11 12 8 60.00 20 12 23 15 60.53 38 13 20 3 86.96 23 14 17 16 51.52 33 15 20 9 68.97 29 16 8 9 47.06 17 17 12 4 75.00 16 18 11 7 61.11 18 19 9 4 69.23 13 20 4 5 44.44 9 21 4 3 57.14 7 22 14 4 77.78 18 23 10 3 76.92 13 24 4 6 40.00 10 25 5 4 55.56 9 26 5 9 35.71 14 27 7 0 100.00 7 28 10 7 58.82 17 29 1 2 33.33 3 30 5 3 62.50 8 31 5 5 50.00 10 32 3 4 42.86 7 33 8 8 50.00 16 34 6 4 60.00 10 35 9 3 75.00 12 36 2 2 50.00 4 37 5 4 55.56 9 38 3 5 37.50 8 39 4 1 80.00 5 40 5 0 100.00 5 41 6 3 66.67 9 42 7 3 70.00 10 43 3 1 75.00 4 44 8 2 80.00 10 45 4 3 57.14 7 46 3 2 60.00 5 47 2 1 66.67 3 48 3 1 75.00 4 49 3 1 75.00 4 50 4 1 80.00 5 51 5 4 55.56 9 52 4 0 100.00 4 53 3 3 50.00 6 54 2 1 66.67 3 55 4 0 100.00 4 56 2 0 100.00 2 57 2 3 40.00 5 58 3 2 60.00 5 59 1 1 50.00 2 60 3 1 75.00 4 61 2 0 100.00 2 62 4 1 80.00 5 63 2 2 50.00 4 64 3 3 50.00 6 65 2 0 100.00 2 66 2 2 50.00 4 67 1 1 50.00 2 68 1 1 50.00 2 69 1 0 100.00 1 70 3 2 60.00 5 71 1 0 100.00 1 72 1 1 50.00 2 73 3 0 100.00 3 74 1 1 50.00 2 75 1 1 50.00 2 76 0 0 0 77 0 0 0 78 3 2 60.00 5 79 2 0 100.00 2 80 1 2 33.33 3 81 1 1 50.00 2 82 0 0 0 83 2 0 100.00 2 84 2 1 66.67 3 85 1 1 50.00 2 86 1 0 100.00 1 87 2 0 100.00 2 88 2 1 66.67 3 89 2 1 66.67 3 90 2 0 100.00 2 91 1 0 100.00 1 92 1 0 100.00 1 93 2 0 100.00 2 94 0 1 0.00 1 95 1 1 50.00 2 96 1 1 50.00 2 97 2 0 100.00 2 98 1 0 100.00 1 99 0 1 0.00 1 100 1 2 33.33 3 101 0 1 0.00 1 102 0 0 0 103 1 0 100.00 1 104 1 0 100.00 1 105 0 1 0.00 1 106 1 1 50.00 2 107 0 0 0 108 0 1 0.00 1 109 0 0 0 110 0 0 0 111 0 1 0.00 1 112 0 1 0.00 1 113 2 3 40.00 5 114 0 0 0 115 0 0 0 116 0 0 0 117 0 0 0 118 0 0 0 119 0 1 0.00 1 120 1 0 100.00 1 121 0 0 0 122 0 1 0.00 1 123 0 0 0 124 0 0 0 125 0 0 0 126 0 0 0 127 1 0 100.00 1 128 0 1 0.00 1 129 1 0 100.00 1 130 0 0 0 131 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 31 16.22 37 2 3 28 9.68 31 3 21 51 29.17 72 4 4 92 4.17 96 5 1 29 3.33 30 6 3 36 7.69 39 7 1 34 2.86 35 8 8 60 11.76 68 9 1 33 2.94 34 10 2 21 8.70 23 11 0 44 0.00 44 12 1 51 1.92 52 13 1 44 2.22 45 14 0 45 0.00 45 15 0 47 0.00 47 16 2 47 4.08 49 17 0 31 0.00 31 18 0 17 0.00 17 19 1 22 4.35 23 20 0 22 0.00 22 21 0 22 0.00 22 22 0 18 0.00 18 23 0 16 0.00 16 24 0 30 0.00 30 25 1 9 10.00 10 26 1 18 5.26 19 27 1 20 4.76 21 28 0 12 0.00 12 29 1 14 6.67 15 30 2 13 13.33 15 31 0 7 0.00 7 32 0 9 0.00 9 33 0 8 0.00 8 34 1 11 8.33 12 35 0 12 0.00 12 36 0 15 0.00 15 37 0 11 0.00 11 38 0 10 0.00 10 39 1 9 10.00 10 40 0 9 0.00 9 41 0 13 0.00 13 42 1 7 12.50 8 43 1 8 11.11 9 44 1 13 7.14 14 45 0 7 0.00 7 46 1 6 14.29 7 47 0 7 0.00 7 48 1 5 16.67 6 49 0 16 0.00 16 50 1 6 14.29 7 51 0 3 0.00 3 52 0 8 0.00 8 53 1 6 14.29 7 54 0 4 0.00 4 55 0 6 0.00 6 56 0 4 0.00 4 57 1 8 11.11 9 58 0 5 0.00 5 59 0 1 0.00 1 60 0 5 0.00 5 61 0 5 0.00 5 62 0 2 0.00 2 63 0 6 0.00 6 64 1 3 25.00 4 65 0 5 0.00 5 66 0 2 0.00 2 67 0 4 0.00 4 68 1 5 16.67 6 69 1 4 20.00 5 70 0 4 0.00 4 71 1 10 9.09 11 72 0 4 0.00 4 73 0 1 0.00 1 74 0 6 0.00 6 75 0 4 0.00 4 76 0 4 0.00 4 77 0 3 0.00 3 78 0 2 0.00 2 79 0 3 0.00 3 80 0 2 0.00 2 81 0 3 0.00 3 82 0 1 0.00 1 83 0 3 0.00 3 84 0 5 0.00 5 85 0 3 0.00 3 86 0 3 0.00 3 87 0 2 0.00 2 88 0 4 0.00 4 89 0 1 0.00 1 90 0 1 0.00 1 91 0 1 0.00 1 92 0 3 0.00 3 93 0 4 0.00 4 94 0 3 0.00 3 95 0 0 0 96 0 2 0.00 2 97 0 1 0.00 1 98 0 4 0.00 4 99 0 1 0.00 1 100 0 2 0.00 2 101 0 2 0.00 2 102 0 2 0.00 2 103 0 2 0.00 2 104 0 5 0.00 5 105 0 1 0.00 1 106 0 4 0.00 4 107 0 1 0.00 1 108 0 1 0.00 1 109 0 1 0.00 1 110 0 1 0.00 1 111 0 1 0.00 1 112 0 3 0.00 3 113 0 1 0.00 1 114 0 1 0.00 1 115 0 2 0.00 2 116 0 0 0 117 0 1 0.00 1 118 0 1 0.00 1 119 0 1 0.00 1 120 0 1 0.00 1 121 0 0 0 122 0 0 0 123 0 0 0 124 0 3 0.00 3 125 0 0 0 126 0 0 0 127 0 1 0.00 1 128 0 2 0.00 2 129 1 0 100.00 1 130 0 1 0.00 1 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 53 108 32.92 161 2 26 109 19.26 135 3 67 88 43.23 155 4 18 118 13.24 136 5 45 108 29.41 153 6 17 84 16.83 101 7 45 79 36.29 124 8 20 91 18.02 111 9 52 122 29.89 174 10 33 83 28.45 116 11 58 83 41.13 141 12 28 92 23.33 120 13 52 95 35.37 147 14 31 110 21.99 141 15 51 108 32.08 159 16 23 107 17.69 130 17 45 94 32.37 139 18 15 71 17.44 86 19 42 56 42.86 98 20 17 58 22.67 75 21 45 55 45.00 100 22 22 51 30.14 73 23 39 53 42.39 92 24 14 58 19.44 72 25 34 57 37.36 91 26 14 49 22.22 63 27 39 45 46.43 84 28 15 55 21.43 70 29 41 54 43.16 95 30 13 62 17.33 75 31 37 40 48.05 77 32 19 45 29.69 64 33 40 38 51.28 78 34 16 35 31.37 51 35 37 42 46.84 79 36 18 39 31.58 57 37 36 39 48.00 75 38 15 37 28.85 52 39 38 37 50.67 75 40 13 28 31.71 41 41 35 38 47.95 73 42 13 41 24.07 54 43 31 30 50.82 61 44 13 29 30.95 42 45 31 39 44.29 70 46 11 38 22.45 49 47 34 29 53.97 63 48 15 38 28.30 53 49 27 24 52.94 51 50 12 28 30.00 40 51 32 29 52.46 61 52 8 19 29.63 27 53 26 28 48.15 54 54 15 31 32.61 46 55 23 18 56.10 41 56 10 26 27.78 36 57 21 40 34.43 61 58 14 24 36.84 38 59 26 26 50.00 52 60 9 25 26.47 34 61 17 21 44.74 38 62 12 27 30.77 39 63 24 27 47.06 51 64 12 18 40.00 30 65 22 22 50.00 44 66 12 27 30.77 39 67 14 24 36.84 38 68 10 24 29.41 34 69 11 17 39.29 28 70 11 15 42.31 26 71 15 20 42.86 35 72 11 24 31.43 35 73 14 15 48.28 29 74 12 15 44.44 27 75 15 18 45.45 33 76 9 17 34.62 26 77 13 16 44.83 29 78 9 14 39.13 23 79 10 14 41.67 24 80 10 15 40.00 25 81 10 14 41.67 24 82 13 8 61.90 21 83 12 15 44.44 27 84 8 20 28.57 28 85 11 16 40.74 27 86 13 11 54.17 24 87 10 15 40.00 25 88 9 13 40.91 22 89 8 10 44.44 18 90 11 15 42.31 26 91 8 13 38.10 21 92 9 12 42.86 21 93 8 13 38.10 21 94 6 12 33.33 18 95 7 10 41.18 17 96 5 13 27.78 18 97 6 9 40.00 15 98 11 12 47.83 23 99 6 11 35.29 17 100 6 17 26.09 23 101 4 7 36.36 11 102 6 13 31.58 19 103 4 8 33.33 12 104 6 10 37.50 16 105 8 9 47.06 17 106 5 10 33.33 15 107 7 6 53.85 13 108 5 10 33.33 15 109 5 10 33.33 15 110 5 9 35.71 14 111 5 9 35.71 14 112 3 8 27.27 11 113 6 5 54.55 11 114 4 11 26.67 15 115 4 7 36.36 11 116 4 8 33.33 12 117 5 10 33.33 15 118 2 8 20.00 10 119 5 6 45.45 11 120 4 8 33.33 12 121 3 9 25.00 12 122 3 8 27.27 11 123 2 11 15.38 13 124 3 8 27.27 11 125 1 7 12.50 8 126 1 8 11.11 9 127 2 7 22.22 9 128 3 8 27.27 11 129 2 7 22.22 9 130 1 4 20.00 5 131 2 1 66.67 3