/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
12165
Pairs without alignments under any condition
22303
Pairs that did not map uniquely
5532
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
377297
Methylated C's in CpG context
45207
Methylated C's in CHG context
2534
Methylated C's in CHH context
47787
Methylated C's in Unknown context
638
Unmethylated C's in CpG context
16846
Unmethylated C's in CHG context
75176
Unmethylated C's in CHH context
189747
Unmethylated C's in Unknown context
1186
Percentage methylation (CpG context)
72.9%
Percentage methylation (CHG context)
3.3%
Percentage methylation (CHH context)
20.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6060
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6104
original bottom strand
Deduplication
Alignments analysed
12164
Unique alignments
9991
Duplicates removed
2173
Duplicated alignments were found at 1655 different positions
