CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 160 80 66.67 240 2 200 112 64.10 312 3 173 93 65.04 266 4 172 104 62.32 276 5 167 107 60.95 274 6 150 104 59.06 254 7 141 97 59.24 238 8 155 91 63.01 246 9 163 81 66.80 244 10 174 106 62.14 280 11 180 90 66.67 270 12 178 93 65.68 271 13 187 86 68.50 273 14 171 99 63.33 270 15 165 100 62.26 265 16 185 98 65.37 283 17 176 91 65.92 267 18 172 92 65.15 264 19 184 84 68.66 268 20 171 103 62.41 274 21 191 96 66.55 287 22 164 89 64.82 253 23 178 99 64.26 277 24 150 107 58.37 257 25 195 87 69.15 282 26 184 103 64.11 287 27 181 92 66.30 273 28 152 83 64.68 235 29 182 84 68.42 266 30 175 99 63.87 274 31 164 96 63.08 260 32 211 95 68.95 306 33 169 75 69.26 244 34 152 83 64.68 235 35 177 78 69.41 255 36 160 79 66.95 239 37 159 94 62.85 253 38 160 87 64.78 247 39 166 98 62.88 264 40 146 75 66.06 221 41 166 76 68.60 242 42 153 80 65.67 233 43 151 89 62.92 240 44 165 80 67.35 245 45 142 76 65.14 218 46 140 78 64.22 218 47 149 100 59.84 249 48 130 61 68.06 191 49 151 70 68.33 221 50 149 76 66.22 225 51 140 72 66.04 212 52 149 78 65.64 227 53 124 53 70.06 177 54 141 60 70.15 201 55 139 69 66.83 208 56 111 67 62.36 178 57 121 84 59.02 205 58 121 51 70.35 172 59 113 55 67.26 168 60 128 61 67.72 189 61 117 64 64.64 181 62 121 62 66.12 183 63 105 55 65.62 160 64 91 63 59.09 154 65 112 62 64.37 174 66 112 55 67.07 167 67 101 68 59.76 169 68 102 64 61.45 166 69 108 42 72.00 150 70 100 50 66.67 150 71 93 38 70.99 131 72 115 62 64.97 177 73 89 43 67.42 132 74 96 51 65.31 147 75 93 53 63.70 146 76 86 44 66.15 130 77 94 35 72.87 129 78 65 52 55.56 117 79 83 44 65.35 127 80 74 42 63.79 116 81 100 38 72.46 138 82 77 38 66.96 115 83 67 34 66.34 101 84 96 41 70.07 137 85 89 34 72.36 123 86 72 49 59.50 121 87 64 35 64.65 99 88 74 38 66.07 112 89 78 41 65.55 119 90 81 27 75.00 108 91 60 34 63.83 94 92 61 31 66.30 92 93 62 35 63.92 97 94 65 34 65.66 99 95 70 30 70.00 100 96 63 30 67.74 93 97 68 29 70.10 97 98 59 39 60.20 98 99 55 36 60.44 91 100 46 22 67.65 68 101 57 29 66.28 86 102 51 36 58.62 87 103 37 28 56.92 65 104 50 20 71.43 70 105 53 32 62.35 85 106 47 24 66.20 71 107 51 24 68.00 75 108 46 36 56.10 82 109 32 25 56.14 57 110 28 29 49.12 57 111 43 21 67.19 64 112 36 20 64.29 56 113 39 20 66.10 59 114 36 26 58.06 62 115 31 23 57.41 54 116 40 13 75.47 53 117 39 23 62.90 62 118 29 21 58.00 50 119 24 20 54.55 44 120 36 27 57.14 63 121 28 16 63.64 44 122 22 19 53.66 41 123 32 18 64.00 50 124 33 27 55.00 60 125 29 13 69.05 42 126 30 16 65.22 46 127 19 14 57.58 33 128 25 12 67.57 37 129 33 16 67.35 49 130 17 20 45.95 37 131 13 8 61.90 21 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53 362 12.77 415 2 19 345 5.22 364 3 10 306 3.16 316 4 20 336 5.62 356 5 17 311 5.18 328 6 21 320 6.16 341 7 9 356 2.47 365 8 8 344 2.27 352 9 10 325 2.99 335 10 14 385 3.51 399 11 11 365 2.93 376 12 9 351 2.50 360 13 10 365 2.67 375 14 6 353 1.67 359 15 11 346 3.08 357 16 18 323 5.28 341 17 7 320 2.14 327 18 13 351 3.57 364 19 9 379 2.32 388 20 10 382 2.55 392 21 13 342 3.66 355 22 8 376 2.08 384 23 9 371 2.37 380 24 5 363 1.36 368 25 9 381 2.31 390 26 4 349 1.13 353 27 10 354 2.75 364 28 12 359 3.23 371 29 14 339 3.97 353 30 13 327 3.82 340 31 13 340 3.68 353 32 17 362 4.49 379 33 10 336 2.89 346 34 14 332 4.05 346 35 16 305 4.98 321 36 14 342 3.93 356 37 12 340 3.41 352 38 16 350 4.37 366 39 5 293 1.68 298 40 12 347 3.34 359 41 5 316 1.56 321 42 14 314 4.27 328 43 14 313 4.28 327 44 10 291 3.32 301 45 5 269 1.82 274 46 7 299 2.29 306 47 4 257 1.53 261 48 2 299 0.66 301 49 15 287 4.97 302 50 10 255 3.77 265 51 9 310 2.82 319 52 8 273 2.85 281 53 6 267 2.20 273 54 7 264 2.58 271 55 3 257 1.15 260 56 6 279 2.11 285 57 5 241 2.03 246 58 6 259 2.26 265 59 4 255 1.54 259 60 4 260 1.52 264 61 2 244 0.81 246 62 7 244 2.79 251 63 7 257 2.65 264 64 10 259 3.72 269 65 9 225 3.85 234 66 7 246 2.77 253 67 7 205 3.30 212 68 5 231 2.12 236 69 3 220 1.35 223 70 5 190 2.56 195 71 10 203 4.69 213 72 3 192 1.54 195 73 3 204 1.45 207 74 5 199 2.45 204 75 8 210 3.67 218 76 5 199 2.45 204 77 5 170 2.86 175 78 3 191 1.55 194 79 6 160 3.61 166 80 6 181 3.21 187 81 7 176 3.83 183 82 3 157 1.88 160 83 3 176 1.68 179 84 0 138 0.00 138 85 3 179 1.65 182 86 6 165 3.51 171 87 3 154 1.91 157 88 1 131 0.76 132 89 3 144 2.04 147 90 4 132 2.94 136 91 1 144 0.69 145 92 3 149 1.97 152 93 4 140 2.78 144 94 1 119 0.83 120 95 2 145 1.36 147 96 5 136 3.55 141 97 1 115 0.86 116 98 3 112 2.61 115 99 1 108 0.92 109 100 1 113 0.88 114 101 2 113 1.74 115 102 5 106 4.50 111 103 0 88 0.00 88 104 3 109 2.68 112 105 1 109 0.91 110 106 1 89 1.11 90 107 1 116 0.85 117 108 0 74 0.00 74 109 1 109 0.91 110 110 0 113 0.00 113 111 2 79 2.47 81 112 2 81 2.41 83 113 2 90 2.17 92 114 3 91 3.19 94 115 3 62 4.62 65 116 5 76 6.17 81 117 1 75 1.32 76 118 2 64 3.03 66 119 0 75 0.00 75 120 3 79 3.66 82 121 0 54 0.00 54 122 2 65 2.99 67 123 6 62 8.82 68 124 2 66 2.94 68 125 3 53 5.36 56 126 3 47 6.00 50 127 2 68 2.86 70 128 1 69 1.43 70 129 2 75 2.60 77 130 3 51 5.56 54 131 1 30 3.23 31 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 292 877 24.98 1169 2 299 841 26.23 1140 3 320 900 26.23 1220 4 305 910 25.10 1215 5 277 923 23.08 1200 6 288 908 24.08 1196 7 285 901 24.03 1186 8 305 813 27.28 1118 9 277 921 23.12 1198 10 287 888 24.43 1175 11 264 830 24.13 1094 12 287 907 24.04 1194 13 304 855 26.23 1159 14 309 891 25.75 1200 15 253 914 21.68 1167 16 285 904 23.97 1189 17 262 927 22.04 1189 18 323 942 25.53 1265 19 313 988 24.06 1301 20 292 967 23.19 1259 21 265 988 21.15 1253 22 300 968 23.66 1268 23 282 935 23.17 1217 24 335 948 26.11 1283 25 295 989 22.98 1284 26 296 989 23.04 1285 27 272 979 21.74 1251 28 317 989 24.27 1306 29 289 964 23.06 1253 30 305 951 24.28 1256 31 264 965 21.48 1229 32 272 932 22.59 1204 33 240 949 20.19 1189 34 302 944 24.24 1246 35 223 933 19.29 1156 36 241 972 19.87 1213 37 243 937 20.59 1180 38 258 915 21.99 1173 39 233 872 21.09 1105 40 243 883 21.58 1126 41 240 882 21.39 1122 42 233 871 21.11 1104 43 224 871 20.46 1095 44 251 901 21.79 1152 45 192 855 18.34 1047 46 231 839 21.59 1070 47 190 843 18.39 1033 48 237 830 22.21 1067 49 240 837 22.28 1077 50 197 834 19.11 1031 51 185 785 19.07 970 52 208 765 21.38 973 53 200 756 20.92 956 54 207 780 20.97 987 55 196 753 20.65 949 56 188 717 20.77 905 57 172 781 18.05 953 58 190 701 21.32 891 59 180 686 20.79 866 60 185 702 20.86 887 61 165 696 19.16 861 62 161 682 19.10 843 63 170 683 19.93 853 64 168 617 21.40 785 65 144 647 18.20 791 66 156 647 19.43 803 67 145 641 18.45 786 68 150 637 19.06 787 69 155 603 20.45 758 70 139 609 18.58 748 71 122 636 16.09 758 72 127 590 17.71 717 73 151 647 18.92 798 74 140 573 19.64 713 75 139 546 20.29 685 76 121 523 18.79 644 77 111 514 17.76 625 78 137 533 20.45 670 79 120 570 17.39 690 80 117 512 18.60 629 81 115 540 17.56 655 82 106 489 17.82 595 83 113 498 18.49 611 84 110 450 19.64 560 85 116 462 20.07 578 86 108 477 18.46 585 87 105 462 18.52 567 88 108 449 19.39 557 89 111 461 19.41 572 90 105 429 19.66 534 91 111 452 19.72 563 92 73 419 14.84 492 93 94 383 19.71 477 94 101 373 21.31 474 95 93 389 19.29 482 96 80 373 17.66 453 97 94 351 21.12 445 98 77 369 17.26 446 99 82 355 18.76 437 100 86 349 19.77 435 101 83 366 18.49 449 102 69 320 17.74 389 103 90 338 21.03 428 104 61 319 16.05 380 105 78 328 19.21 406 106 65 321 16.84 386 107 58 283 17.01 341 108 59 280 17.40 339 109 78 279 21.85 357 110 54 267 16.82 321 111 60 293 17.00 353 112 58 288 16.76 346 113 62 281 18.08 343 114 64 264 19.51 328 115 57 245 18.87 302 116 53 255 17.21 308 117 57 243 19.00 300 118 55 229 19.37 284 119 56 235 19.24 291 120 49 232 17.44 281 121 48 213 18.39 261 122 50 240 17.24 290 123 33 213 13.41 246 124 36 211 14.57 247 125 46 208 18.11 254 126 39 201 16.25 240 127 44 215 16.99 259 128 38 207 15.51 245 129 39 196 16.60 235 130 36 176 16.98 212 131 27 138 16.36 165 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 23 16 58.97 39 2 24 18 57.14 42 3 28 21 57.14 49 4 23 15 60.53 38 5 25 21 54.35 46 6 16 10 61.54 26 7 18 20 47.37 38 8 21 11 65.62 32 9 22 10 68.75 32 10 17 17 50.00 34 11 14 15 48.28 29 12 16 12 57.14 28 13 12 15 44.44 27 14 13 11 54.17 24 15 22 14 61.11 36 16 24 15 61.54 39 17 18 12 60.00 30 18 17 10 62.96 27 19 11 12 47.83 23 20 17 8 68.00 25 21 20 8 71.43 28 22 11 5 68.75 16 23 16 6 72.73 22 24 16 12 57.14 28 25 15 14 51.72 29 26 12 7 63.16 19 27 14 14 50.00 28 28 15 9 62.50 24 29 15 2 88.24 17 30 7 11 38.89 18 31 10 8 55.56 18 32 17 9 65.38 26 33 6 12 33.33 18 34 16 13 55.17 29 35 6 11 35.29 17 36 10 3 76.92 13 37 15 10 60.00 25 38 5 2 71.43 7 39 14 6 70.00 20 40 7 5 58.33 12 41 5 4 55.56 9 42 4 5 44.44 9 43 6 7 46.15 13 44 7 5 58.33 12 45 9 4 69.23 13 46 11 3 78.57 14 47 8 4 66.67 12 48 9 7 56.25 16 49 5 5 50.00 10 50 2 8 20.00 10 51 10 6 62.50 16 52 6 3 66.67 9 53 6 2 75.00 8 54 6 8 42.86 14 55 9 3 75.00 12 56 4 7 36.36 11 57 9 2 81.82 11 58 8 6 57.14 14 59 6 4 60.00 10 60 0 4 0.00 4 61 9 2 81.82 11 62 6 5 54.55 11 63 4 2 66.67 6 64 4 4 50.00 8 65 5 5 50.00 10 66 5 3 62.50 8 67 6 5 54.55 11 68 4 3 57.14 7 69 1 3 25.00 4 70 2 4 33.33 6 71 3 0 100.00 3 72 3 4 42.86 7 73 8 5 61.54 13 74 4 4 50.00 8 75 6 4 60.00 10 76 4 4 50.00 8 77 1 7 12.50 8 78 4 4 50.00 8 79 3 3 50.00 6 80 0 1 0.00 1 81 4 0 100.00 4 82 3 3 50.00 6 83 3 1 75.00 4 84 3 2 60.00 5 85 2 0 100.00 2 86 5 0 100.00 5 87 5 2 71.43 7 88 3 4 42.86 7 89 0 0 0 90 2 1 66.67 3 91 1 1 50.00 2 92 2 2 50.00 4 93 0 2 0.00 2 94 3 3 50.00 6 95 2 1 66.67 3 96 2 2 50.00 4 97 2 1 66.67 3 98 1 1 50.00 2 99 2 1 66.67 3 100 2 3 40.00 5 101 0 1 0.00 1 102 1 1 50.00 2 103 2 0 100.00 2 104 1 1 50.00 2 105 1 4 20.00 5 106 1 0 100.00 1 107 1 3 25.00 4 108 1 3 25.00 4 109 2 1 66.67 3 110 2 1 66.67 3 111 2 1 66.67 3 112 1 1 50.00 2 113 1 1 50.00 2 114 2 2 50.00 4 115 0 0 0 116 2 0 100.00 2 117 1 0 100.00 1 118 1 2 33.33 3 119 0 0 0 120 0 2 0.00 2 121 1 2 33.33 3 122 1 2 33.33 3 123 1 0 100.00 1 124 1 2 33.33 3 125 0 1 0.00 1 126 1 1 50.00 2 127 1 1 50.00 2 128 0 0 0 129 1 1 50.00 2 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 48 9.43 53 2 5 56 8.20 61 3 6 67 8.22 73 4 3 63 4.55 66 5 3 55 5.17 58 6 1 50 1.96 51 7 1 55 1.79 56 8 6 66 8.33 72 9 2 51 3.77 53 10 4 50 7.41 54 11 1 45 2.17 46 12 0 49 0.00 49 13 0 52 0.00 52 14 1 64 1.54 65 15 2 35 5.41 37 16 0 39 0.00 39 17 1 57 1.72 58 18 1 42 2.33 43 19 0 34 0.00 34 20 0 39 0.00 39 21 1 37 2.63 38 22 1 38 2.56 39 23 0 40 0.00 40 24 0 31 0.00 31 25 2 34 5.56 36 26 0 40 0.00 40 27 0 24 0.00 24 28 2 31 6.06 33 29 0 32 0.00 32 30 0 20 0.00 20 31 1 21 4.55 22 32 2 27 6.90 29 33 2 27 6.90 29 34 1 23 4.17 24 35 0 29 0.00 29 36 0 26 0.00 26 37 0 23 0.00 23 38 1 27 3.57 28 39 0 17 0.00 17 40 0 23 0.00 23 41 0 23 0.00 23 42 0 16 0.00 16 43 1 15 6.25 16 44 0 17 0.00 17 45 0 23 0.00 23 46 0 21 0.00 21 47 0 23 0.00 23 48 0 14 0.00 14 49 1 12 7.69 13 50 0 15 0.00 15 51 0 17 0.00 17 52 0 15 0.00 15 53 1 10 9.09 11 54 0 17 0.00 17 55 0 12 0.00 12 56 0 13 0.00 13 57 1 18 5.26 19 58 0 13 0.00 13 59 1 10 9.09 11 60 1 14 6.67 15 61 0 6 0.00 6 62 0 16 0.00 16 63 0 8 0.00 8 64 0 9 0.00 9 65 0 11 0.00 11 66 0 6 0.00 6 67 0 13 0.00 13 68 0 12 0.00 12 69 0 11 0.00 11 70 0 15 0.00 15 71 0 8 0.00 8 72 0 7 0.00 7 73 1 7 12.50 8 74 0 8 0.00 8 75 1 10 9.09 11 76 0 4 0.00 4 77 0 10 0.00 10 78 0 11 0.00 11 79 0 11 0.00 11 80 0 6 0.00 6 81 0 8 0.00 8 82 0 10 0.00 10 83 0 7 0.00 7 84 0 8 0.00 8 85 0 5 0.00 5 86 0 8 0.00 8 87 0 8 0.00 8 88 0 8 0.00 8 89 0 7 0.00 7 90 0 3 0.00 3 91 0 6 0.00 6 92 1 10 9.09 11 93 1 6 14.29 7 94 0 6 0.00 6 95 0 11 0.00 11 96 0 7 0.00 7 97 0 3 0.00 3 98 0 4 0.00 4 99 0 4 0.00 4 100 0 5 0.00 5 101 0 4 0.00 4 102 0 4 0.00 4 103 0 7 0.00 7 104 0 5 0.00 5 105 0 3 0.00 3 106 0 3 0.00 3 107 0 6 0.00 6 108 0 4 0.00 4 109 0 8 0.00 8 110 0 5 0.00 5 111 0 9 0.00 9 112 0 2 0.00 2 113 0 2 0.00 2 114 0 6 0.00 6 115 0 3 0.00 3 116 0 1 0.00 1 117 0 4 0.00 4 118 0 4 0.00 4 119 0 3 0.00 3 120 1 0 100.00 1 121 0 5 0.00 5 122 0 4 0.00 4 123 0 1 0.00 1 124 0 4 0.00 4 125 0 4 0.00 4 126 0 4 0.00 4 127 0 1 0.00 1 128 0 1 0.00 1 129 0 0 0 130 0 3 0.00 3 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52 170 23.42 222 2 32 167 16.08 199 3 68 168 28.81 236 4 32 187 14.61 219 5 50 149 25.13 199 6 24 150 13.79 174 7 55 165 25.00 220 8 30 160 15.79 190 9 56 143 28.14 199 10 32 171 15.76 203 11 55 147 27.23 202 12 38 142 21.11 180 13 55 156 26.07 211 14 37 152 19.58 189 15 54 129 29.51 183 16 37 138 21.14 175 17 60 107 35.93 167 18 26 115 18.44 141 19 46 116 28.40 162 20 15 127 10.56 142 21 56 107 34.36 163 22 25 103 19.53 128 23 40 102 28.17 142 24 14 102 12.07 116 25 46 107 30.07 153 26 19 99 16.10 118 27 46 114 28.75 160 28 17 104 14.05 121 29 48 108 30.77 156 30 13 87 13.00 100 31 38 84 31.15 122 32 18 93 16.22 111 33 47 84 35.88 131 34 16 82 16.33 98 35 35 82 29.91 117 36 20 79 20.20 99 37 43 76 36.13 119 38 17 61 21.79 78 39 37 80 31.62 117 40 13 82 13.68 95 41 31 87 26.27 118 42 18 78 18.75 96 43 31 79 28.18 110 44 10 72 12.20 82 45 31 78 28.44 109 46 16 68 19.05 84 47 29 51 36.25 80 48 15 64 18.99 79 49 36 61 37.11 97 50 10 56 15.15 66 51 30 50 37.50 80 52 17 68 20.00 85 53 28 49 36.36 77 54 10 50 16.67 60 55 22 52 29.73 74 56 10 49 16.95 59 57 20 39 33.90 59 58 10 49 16.95 59 59 25 44 36.23 69 60 11 61 15.28 72 61 24 44 35.29 68 62 13 47 21.67 60 63 21 47 30.88 68 64 11 53 17.19 64 65 18 41 30.51 59 66 10 45 18.18 55 67 23 38 37.70 61 68 7 36 16.28 43 69 20 48 29.41 68 70 6 39 13.33 45 71 16 50 24.24 66 72 5 30 14.29 35 73 19 39 32.76 58 74 6 40 13.04 46 75 15 40 27.27 55 76 9 35 20.45 44 77 15 31 32.61 46 78 11 24 31.43 35 79 18 36 33.33 54 80 7 30 18.92 37 81 16 36 30.77 52 82 7 26 21.21 33 83 18 45 28.57 63 84 8 22 26.67 30 85 17 27 38.64 44 86 10 23 30.30 33 87 13 36 26.53 49 88 12 26 31.58 38 89 15 32 31.91 47 90 5 33 13.16 38 91 14 30 31.82 44 92 9 24 27.27 33 93 13 33 28.26 46 94 9 22 29.03 31 95 10 24 29.41 34 96 6 17 26.09 23 97 16 31 34.04 47 98 8 21 27.59 29 99 13 33 28.26 46 100 10 21 32.26 31 101 11 35 23.91 46 102 5 27 15.62 32 103 13 23 36.11 36 104 10 24 29.41 34 105 10 26 27.78 36 106 7 24 22.58 31 107 8 18 30.77 26 108 6 16 27.27 22 109 10 21 32.26 31 110 5 12 29.41 17 111 9 18 33.33 27 112 8 17 32.00 25 113 8 19 29.63 27 114 7 15 31.82 22 115 11 18 37.93 29 116 5 11 31.25 16 117 10 17 37.04 27 118 7 15 31.82 22 119 8 13 38.10 21 120 6 13 31.58 19 121 13 21 38.24 34 122 5 9 35.71 14 123 6 15 28.57 21 124 3 12 20.00 15 125 8 16 33.33 24 126 3 17 15.00 20 127 10 17 37.04 27 128 3 12 20.00 15 129 7 20 25.93 27 130 5 9 35.71 14 131 2 2 50.00 4