/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11495
Pairs without alignments under any condition
23734
Pairs that did not map uniquely
4771
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
391393
Methylated C's in CpG context
35981
Methylated C's in CHG context
2219
Methylated C's in CHH context
49721
Methylated C's in Unknown context
588
Unmethylated C's in CpG context
19350
Unmethylated C's in CHG context
74795
Unmethylated C's in CHH context
209327
Unmethylated C's in Unknown context
1278
Percentage methylation (CpG context)
65.0%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
19.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5900
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5595
original bottom strand
Deduplication
Alignments analysed
11495
Unique alignments
9209
Duplicates removed
2286
Duplicated alignments were found at 1720 different positions
