/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7390
Pairs without alignments under any condition
27436
Pairs that did not map uniquely
5174
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
257936
Methylated C's in CpG context
2668
Methylated C's in CHG context
936
Methylated C's in CHH context
31250
Methylated C's in Unknown context
409
Unmethylated C's in CpG context
29821
Unmethylated C's in CHG context
42819
Unmethylated C's in CHH context
150442
Unmethylated C's in Unknown context
899
Percentage methylation (CpG context)
8.2%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
17.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3690
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3700
original bottom strand
Deduplication
Alignments analysed
7390
Unique alignments
6079
Duplicates removed
1311
Duplicated alignments were found at 964 different positions
