CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 116 91 56.04 207 2 152 103 59.61 255 3 110 74 59.78 184 4 108 90 54.55 198 5 107 89 54.59 196 6 110 100 52.38 210 7 85 97 46.70 182 8 97 84 53.59 181 9 103 72 58.86 175 10 89 96 48.11 185 11 101 90 52.88 191 12 84 84 50.00 168 13 114 77 59.69 191 14 88 87 50.29 175 15 98 86 53.26 184 16 116 94 55.24 210 17 105 72 59.32 177 18 104 96 52.00 200 19 91 90 50.28 181 20 107 87 55.15 194 21 106 99 51.71 205 22 97 94 50.79 191 23 85 83 50.60 168 24 102 93 52.31 195 25 113 83 57.65 196 26 103 111 48.13 214 27 119 93 56.13 212 28 117 95 55.19 212 29 109 85 56.19 194 30 101 95 51.53 196 31 107 78 57.84 185 32 113 84 57.36 197 33 104 87 54.45 191 34 97 97 50.00 194 35 96 89 51.89 185 36 77 92 45.56 169 37 101 81 55.49 182 38 90 76 54.22 166 39 98 66 59.76 164 40 88 85 50.87 173 41 93 70 57.06 163 42 91 86 51.41 177 43 91 84 52.00 175 44 81 89 47.65 170 45 96 71 57.49 167 46 79 71 52.67 150 47 92 73 55.76 165 48 74 88 45.68 162 49 77 66 53.85 143 50 73 77 48.67 150 51 61 77 44.20 138 52 71 74 48.97 145 53 82 51 61.65 133 54 78 83 48.45 161 55 81 65 55.48 146 56 74 95 43.79 169 57 72 62 53.73 134 58 61 64 48.80 125 59 57 49 53.77 106 60 58 63 47.93 121 61 55 46 54.46 101 62 55 58 48.67 113 63 63 69 47.73 132 64 47 71 39.83 118 65 71 49 59.17 120 66 51 51 50.00 102 67 49 59 45.37 108 68 57 61 48.31 118 69 62 36 63.27 98 70 59 56 51.30 115 71 61 49 55.45 110 72 50 49 50.51 99 73 46 50 47.92 96 74 53 42 55.79 95 75 44 45 49.44 89 76 39 46 45.88 85 77 43 37 53.75 80 78 41 49 45.56 90 79 47 48 49.47 95 80 28 39 41.79 67 81 28 45 38.36 73 82 42 54 43.75 96 83 44 34 56.41 78 84 28 33 45.90 61 85 48 37 56.47 85 86 35 35 50.00 70 87 32 31 50.79 63 88 36 39 48.00 75 89 32 39 45.07 71 90 31 24 56.36 55 91 40 29 57.97 69 92 25 40 38.46 65 93 29 33 46.77 62 94 23 32 41.82 55 95 18 27 40.00 45 96 17 33 34.00 50 97 27 25 51.92 52 98 30 27 52.63 57 99 24 22 52.17 46 100 20 30 40.00 50 101 32 25 56.14 57 102 28 20 58.33 48 103 17 22 43.59 39 104 16 24 40.00 40 105 20 18 52.63 38 106 18 21 46.15 39 107 16 19 45.71 35 108 9 23 28.12 32 109 22 18 55.00 40 110 14 16 46.67 30 111 20 15 57.14 35 112 12 20 37.50 32 113 22 10 68.75 32 114 9 14 39.13 23 115 16 19 45.71 35 116 17 18 48.57 35 117 23 19 54.76 42 118 17 12 58.62 29 119 14 18 43.75 32 120 11 19 36.67 30 121 11 7 61.11 18 122 14 17 45.16 31 123 19 7 73.08 26 124 16 9 64.00 25 125 16 13 55.17 29 126 7 13 35.00 20 127 19 11 63.33 30 128 10 5 66.67 15 129 11 6 64.71 17 130 9 7 56.25 16 131 9 4 69.23 13 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 83 248 25.08 331 2 19 222 7.88 241 3 19 223 7.85 242 4 18 268 6.29 286 5 29 240 10.78 269 6 25 227 9.92 252 7 14 257 5.17 271 8 10 248 3.88 258 9 11 252 4.18 263 10 14 274 4.86 288 11 9 254 3.42 263 12 10 273 3.53 283 13 11 246 4.28 257 14 11 251 4.20 262 15 10 270 3.57 280 16 9 242 3.59 251 17 7 252 2.70 259 18 12 263 4.36 275 19 6 253 2.32 259 20 3 293 1.01 296 21 14 274 4.86 288 22 16 260 5.80 276 23 12 266 4.32 278 24 13 257 4.81 270 25 13 261 4.74 274 26 13 276 4.50 289 27 10 276 3.50 286 28 7 259 2.63 266 29 6 273 2.15 279 30 7 268 2.55 275 31 8 245 3.16 253 32 7 249 2.73 256 33 10 272 3.55 282 34 5 222 2.20 227 35 10 223 4.29 233 36 8 245 3.16 253 37 8 227 3.40 235 38 9 212 4.07 221 39 6 241 2.43 247 40 6 238 2.46 244 41 8 258 3.01 266 42 6 234 2.50 240 43 5 212 2.30 217 44 6 193 3.02 199 45 6 220 2.65 226 46 6 201 2.90 207 47 6 180 3.23 186 48 5 210 2.33 215 49 15 226 6.22 241 50 13 213 5.75 226 51 3 187 1.58 190 52 5 204 2.39 209 53 6 216 2.70 222 54 6 198 2.94 204 55 9 165 5.17 174 56 5 178 2.73 183 57 9 169 5.06 178 58 7 149 4.49 156 59 3 147 2.00 150 60 7 167 4.02 174 61 4 175 2.23 179 62 2 175 1.13 177 63 4 169 2.31 173 64 6 156 3.70 162 65 3 156 1.89 159 66 5 141 3.42 146 67 3 138 2.13 141 68 3 138 2.13 141 69 4 126 3.08 130 70 2 149 1.32 151 71 4 132 2.94 136 72 4 129 3.01 133 73 2 117 1.68 119 74 4 137 2.84 141 75 3 138 2.13 141 76 2 102 1.92 104 77 3 109 2.68 112 78 4 103 3.74 107 79 5 100 4.76 105 80 1 116 0.85 117 81 5 128 3.76 133 82 3 96 3.03 99 83 3 98 2.97 101 84 6 102 5.56 108 85 0 82 0.00 82 86 3 85 3.41 88 87 5 89 5.32 94 88 0 76 0.00 76 89 0 81 0.00 81 90 0 94 0.00 94 91 2 75 2.60 77 92 1 94 1.05 95 93 0 71 0.00 71 94 2 71 2.74 73 95 0 86 0.00 86 96 1 76 1.30 77 97 3 72 4.00 75 98 0 76 0.00 76 99 1 74 1.33 75 100 1 56 1.75 57 101 2 66 2.94 68 102 2 58 3.33 60 103 3 58 4.92 61 104 2 57 3.39 59 105 1 46 2.13 47 106 2 47 4.08 49 107 1 61 1.61 62 108 1 53 1.85 54 109 0 50 0.00 50 110 1 50 1.96 51 111 2 48 4.00 50 112 1 30 3.23 31 113 0 41 0.00 41 114 0 42 0.00 42 115 0 60 0.00 60 116 0 54 0.00 54 117 1 36 2.70 37 118 1 36 2.70 37 119 1 31 3.12 32 120 1 29 3.33 30 121 0 43 0.00 43 122 2 30 6.25 32 123 0 28 0.00 28 124 2 34 5.56 36 125 3 21 12.50 24 126 3 26 10.34 29 127 2 35 5.41 37 128 1 23 4.17 24 129 1 35 2.78 36 130 2 27 6.90 29 131 3 17 15.00 20 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 408 626 39.46 1034 2 354 674 34.44 1028 3 346 632 35.38 978 4 340 707 32.47 1047 5 354 741 32.33 1095 6 369 659 35.89 1028 7 334 628 34.72 962 8 380 644 37.11 1024 9 394 672 36.96 1066 10 376 675 35.78 1051 11 362 657 35.53 1019 12 372 684 35.23 1056 13 362 713 33.67 1075 14 389 724 34.95 1113 15 364 702 34.15 1066 16 404 731 35.59 1135 17 344 733 31.94 1077 18 372 743 33.36 1115 19 395 744 34.68 1139 20 406 744 35.30 1150 21 388 705 35.50 1093 22 382 741 34.02 1123 23 386 739 34.31 1125 24 402 747 34.99 1149 25 379 751 33.54 1130 26 371 702 34.58 1073 27 375 682 35.48 1057 28 389 690 36.05 1079 29 380 716 34.67 1096 30 385 774 33.22 1159 31 388 715 35.18 1103 32 358 745 32.46 1103 33 378 685 35.56 1063 34 385 693 35.71 1078 35 348 668 34.25 1016 36 360 705 33.80 1065 37 372 676 35.50 1048 38 341 714 32.32 1055 39 358 663 35.06 1021 40 332 671 33.10 1003 41 326 624 34.32 950 42 350 630 35.71 980 43 326 611 34.79 937 44 317 706 30.99 1023 45 312 657 32.20 969 46 306 649 32.04 955 47 287 632 31.23 919 48 331 651 33.71 982 49 303 591 33.89 894 50 282 598 32.05 880 51 267 535 33.29 802 52 281 525 34.86 806 53 284 504 36.04 788 54 295 522 36.11 817 55 258 500 34.04 758 56 257 503 33.82 760 57 249 510 32.81 759 58 245 516 32.19 761 59 228 500 31.32 728 60 240 472 33.71 712 61 218 441 33.08 659 62 219 452 32.64 671 63 205 411 33.28 616 64 227 426 34.76 653 65 201 436 31.55 637 66 207 414 33.33 621 67 201 413 32.74 614 68 211 403 34.36 614 69 188 373 33.51 561 70 214 388 35.55 602 71 174 385 31.13 559 72 200 354 36.10 554 73 169 332 33.73 501 74 195 331 37.07 526 75 166 366 31.20 532 76 171 334 33.86 505 77 159 345 31.55 504 78 152 370 29.12 522 79 147 357 29.17 504 80 159 345 31.55 504 81 137 276 33.17 413 82 163 294 35.67 457 83 140 273 33.90 413 84 141 271 34.22 412 85 141 272 34.14 413 86 148 313 32.10 461 87 118 250 32.07 368 88 128 274 31.84 402 89 121 262 31.59 383 90 124 230 35.03 354 91 109 245 30.79 354 92 118 224 34.50 342 93 106 214 33.12 320 94 105 210 33.33 315 95 96 224 30.00 320 96 104 205 33.66 309 97 100 204 32.89 304 98 105 220 32.31 325 99 88 187 32.00 275 100 103 201 33.88 304 101 93 172 35.09 265 102 94 206 31.33 300 103 78 178 30.47 256 104 87 184 32.10 271 105 69 199 25.75 268 106 89 177 33.46 266 107 81 166 32.79 247 108 82 180 31.30 262 109 73 153 32.30 226 110 81 152 34.76 233 111 64 166 27.83 230 112 74 172 30.08 246 113 80 156 33.90 236 114 66 148 30.84 214 115 63 138 31.34 201 116 68 121 35.98 189 117 50 111 31.06 161 118 62 110 36.05 172 119 54 126 30.00 180 120 67 122 35.45 189 121 66 113 36.87 179 122 62 119 34.25 181 123 52 92 36.11 144 124 50 124 28.74 174 125 50 110 31.25 160 126 50 116 30.12 166 127 42 93 31.11 135 128 45 109 29.22 154 129 38 84 31.15 122 130 44 104 29.73 148 131 32 52 38.10 84 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11 12 47.83 23 2 25 9 73.53 34 3 51 13 79.69 64 4 4 14 22.22 18 5 4 18 18.18 22 6 4 12 25.00 16 7 4 9 30.77 13 8 8 9 47.06 17 9 12 14 46.15 26 10 13 13 50.00 26 11 8 13 38.10 21 12 6 14 30.00 20 13 12 13 48.00 25 14 6 13 31.58 19 15 7 11 38.89 18 16 4 9 30.77 13 17 8 11 42.11 19 18 7 12 36.84 19 19 7 10 41.18 17 20 4 8 33.33 12 21 2 11 15.38 13 22 4 7 36.36 11 23 1 8 11.11 9 24 3 5 37.50 8 25 3 3 50.00 6 26 1 6 14.29 7 27 6 3 66.67 9 28 9 7 56.25 16 29 1 9 10.00 10 30 2 8 20.00 10 31 2 5 28.57 7 32 2 2 50.00 4 33 1 3 25.00 4 34 3 3 50.00 6 35 1 4 20.00 5 36 1 1 50.00 2 37 0 6 0.00 6 38 1 9 10.00 10 39 3 6 33.33 9 40 1 3 25.00 4 41 4 7 36.36 11 42 0 4 0.00 4 43 6 5 54.55 11 44 1 3 25.00 4 45 1 9 10.00 10 46 2 6 25.00 8 47 3 5 37.50 8 48 0 7 0.00 7 49 2 5 28.57 7 50 1 2 33.33 3 51 1 6 14.29 7 52 1 4 20.00 5 53 2 2 50.00 4 54 1 3 25.00 4 55 0 6 0.00 6 56 2 3 40.00 5 57 0 5 0.00 5 58 2 0 100.00 2 59 2 3 40.00 5 60 1 3 25.00 4 61 1 3 25.00 4 62 1 3 25.00 4 63 2 3 40.00 5 64 0 2 0.00 2 65 1 2 33.33 3 66 0 2 0.00 2 67 2 6 25.00 8 68 0 1 0.00 1 69 0 4 0.00 4 70 0 2 0.00 2 71 0 3 0.00 3 72 0 5 0.00 5 73 0 1 0.00 1 74 4 2 66.67 6 75 0 2 0.00 2 76 3 4 42.86 7 77 0 1 0.00 1 78 0 0 0 79 1 3 25.00 4 80 1 3 25.00 4 81 0 0 0 82 1 0 100.00 1 83 1 1 50.00 2 84 2 0 100.00 2 85 1 0 100.00 1 86 0 2 0.00 2 87 0 1 0.00 1 88 1 1 50.00 2 89 0 2 0.00 2 90 0 0 0 91 1 1 50.00 2 92 2 1 66.67 3 93 2 2 50.00 4 94 0 0 0 95 0 4 0.00 4 96 0 0 0 97 0 2 0.00 2 98 0 0 0 99 2 3 40.00 5 100 1 0 100.00 1 101 0 1 0.00 1 102 1 0 100.00 1 103 0 3 0.00 3 104 0 1 0.00 1 105 0 1 0.00 1 106 0 0 0 107 1 2 33.33 3 108 0 0 0 109 0 0 0 110 0 0 0 111 0 2 0.00 2 112 0 0 0 113 0 2 0.00 2 114 0 0 0 115 0 1 0.00 1 116 0 1 0.00 1 117 0 0 0 118 1 0 100.00 1 119 0 0 0 120 0 1 0.00 1 121 0 0 0 122 0 0 0 123 0 1 0.00 1 124 0 0 0 125 0 1 0.00 1 126 0 0 0 127 0 0 0 128 0 0 0 129 0 0 0 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 26 18.75 32 2 2 24 7.69 26 3 18 55 24.66 73 4 0 81 0.00 81 5 4 30 11.76 34 6 2 26 7.14 28 7 3 22 12.00 25 8 19 51 27.14 70 9 2 25 7.41 27 10 1 21 4.55 22 11 1 26 3.70 27 12 5 39 11.36 44 13 0 31 0.00 31 14 2 21 8.70 23 15 3 23 11.54 26 16 0 27 0.00 27 17 0 21 0.00 21 18 0 13 0.00 13 19 0 17 0.00 17 20 0 20 0.00 20 21 1 15 6.25 16 22 0 16 0.00 16 23 1 15 6.25 16 24 1 12 7.69 13 25 0 20 0.00 20 26 0 10 0.00 10 27 0 11 0.00 11 28 2 15 11.76 17 29 0 13 0.00 13 30 0 13 0.00 13 31 1 8 11.11 9 32 0 6 0.00 6 33 1 8 11.11 9 34 1 4 20.00 5 35 0 12 0.00 12 36 1 10 9.09 11 37 1 12 7.69 13 38 0 6 0.00 6 39 0 7 0.00 7 40 0 10 0.00 10 41 0 8 0.00 8 42 0 12 0.00 12 43 0 3 0.00 3 44 0 11 0.00 11 45 0 7 0.00 7 46 0 3 0.00 3 47 0 11 0.00 11 48 1 2 33.33 3 49 0 5 0.00 5 50 1 5 16.67 6 51 0 7 0.00 7 52 0 3 0.00 3 53 0 9 0.00 9 54 0 13 0.00 13 55 0 4 0.00 4 56 1 3 25.00 4 57 0 4 0.00 4 58 1 3 25.00 4 59 0 4 0.00 4 60 0 3 0.00 3 61 0 3 0.00 3 62 0 5 0.00 5 63 0 5 0.00 5 64 0 1 0.00 1 65 0 4 0.00 4 66 0 3 0.00 3 67 0 5 0.00 5 68 0 2 0.00 2 69 0 3 0.00 3 70 0 3 0.00 3 71 0 3 0.00 3 72 0 3 0.00 3 73 0 1 0.00 1 74 0 2 0.00 2 75 0 5 0.00 5 76 0 3 0.00 3 77 0 8 0.00 8 78 0 2 0.00 2 79 0 2 0.00 2 80 0 2 0.00 2 81 0 3 0.00 3 82 0 6 0.00 6 83 0 1 0.00 1 84 0 5 0.00 5 85 0 4 0.00 4 86 0 1 0.00 1 87 0 3 0.00 3 88 0 4 0.00 4 89 0 0 0 90 0 2 0.00 2 91 0 1 0.00 1 92 0 3 0.00 3 93 0 1 0.00 1 94 0 3 0.00 3 95 0 0 0 96 0 0 0 97 0 2 0.00 2 98 0 1 0.00 1 99 0 1 0.00 1 100 0 2 0.00 2 101 0 0 0 102 0 0 0 103 0 1 0.00 1 104 0 1 0.00 1 105 0 1 0.00 1 106 0 6 0.00 6 107 0 0 0 108 0 2 0.00 2 109 1 2 33.33 3 110 0 0 0 111 0 1 0.00 1 112 0 2 0.00 2 113 0 1 0.00 1 114 0 2 0.00 2 115 0 2 0.00 2 116 0 1 0.00 1 117 0 0 0 118 0 2 0.00 2 119 0 0 0 120 0 1 0.00 1 121 0 2 0.00 2 122 0 1 0.00 1 123 0 1 0.00 1 124 0 3 0.00 3 125 1 0 100.00 1 126 0 0 0 127 0 1 0.00 1 128 0 1 0.00 1 129 0 0 0 130 0 0 0 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 86 83 50.89 169 2 36 108 25.00 144 3 92 87 51.40 179 4 32 118 21.33 150 5 66 66 50.00 132 6 29 89 24.58 118 7 83 83 50.00 166 8 46 82 35.94 128 9 95 82 53.67 177 10 64 72 47.06 136 11 90 61 59.60 151 12 60 78 43.48 138 13 91 76 54.49 167 14 65 88 42.48 153 15 93 79 54.07 172 16 58 88 39.73 146 17 74 87 45.96 161 18 45 59 43.27 104 19 78 53 59.54 131 20 46 36 56.10 82 21 72 47 60.50 119 22 40 61 39.60 101 23 64 55 53.78 119 24 42 52 44.68 94 25 65 46 58.56 111 26 42 51 45.16 93 27 63 57 52.50 120 28 44 39 53.01 83 29 55 47 53.92 102 30 38 46 45.24 84 31 62 49 55.86 111 32 36 37 49.32 73 33 64 43 59.81 107 34 35 39 47.30 74 35 47 40 54.02 87 36 33 42 44.00 75 37 52 37 58.43 89 38 35 41 46.05 76 39 54 33 62.07 87 40 34 40 45.95 74 41 48 26 64.86 74 42 39 38 50.65 77 43 50 32 60.98 82 44 37 29 56.06 66 45 44 21 67.69 65 46 36 38 48.65 74 47 42 32 56.76 74 48 32 35 47.76 67 49 46 21 68.66 67 50 24 30 44.44 54 51 44 22 66.67 66 52 27 25 51.92 52 53 44 20 68.75 64 54 27 26 50.94 53 55 37 24 60.66 61 56 27 28 49.09 55 57 33 29 53.23 62 58 24 24 50.00 48 59 34 26 56.67 60 60 24 23 51.06 47 61 33 25 56.90 58 62 20 28 41.67 48 63 37 22 62.71 59 64 23 17 57.50 40 65 30 24 55.56 54 66 23 17 57.50 40 67 27 19 58.70 46 68 21 23 47.73 44 69 29 17 63.04 46 70 21 15 58.33 36 71 27 20 57.45 47 72 18 15 54.55 33 73 28 20 58.33 48 74 18 18 50.00 36 75 23 21 52.27 44 76 23 19 54.76 42 77 22 18 55.00 40 78 21 16 56.76 37 79 21 23 47.73 44 80 18 14 56.25 32 81 23 20 53.49 43 82 18 14 56.25 32 83 18 16 52.94 34 84 16 14 53.33 30 85 20 16 55.56 36 86 15 12 55.56 27 87 18 17 51.43 35 88 14 13 51.85 27 89 16 14 53.33 30 90 10 12 45.45 22 91 14 18 43.75 32 92 9 9 50.00 18 93 13 12 52.00 25 94 8 12 40.00 20 95 8 15 34.78 23 96 10 11 47.62 21 97 11 9 55.00 20 98 11 10 52.38 21 99 8 9 47.06 17 100 9 12 42.86 21 101 11 9 55.00 20 102 7 14 33.33 21 103 12 9 57.14 21 104 9 11 45.00 20 105 8 8 50.00 16 106 10 12 45.45 22 107 7 9 43.75 16 108 10 9 52.63 19 109 7 8 46.67 15 110 6 10 37.50 16 111 8 5 61.54 13 112 7 10 41.18 17 113 9 5 64.29 14 114 5 10 33.33 15 115 4 10 28.57 14 116 5 8 38.46 13 117 3 8 27.27 11 118 8 9 47.06 17 119 6 8 42.86 14 120 6 7 46.15 13 121 3 9 25.00 12 122 6 6 50.00 12 123 4 7 36.36 11 124 4 11 26.67 15 125 5 4 55.56 9 126 2 7 22.22 9 127 3 8 27.27 11 128 3 7 30.00 10 129 2 8 20.00 10 130 3 7 30.00 10 131 4 0 100.00 4