/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10099
Pairs without alignments under any condition
23201
Pairs that did not map uniquely
6700
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
285343
Methylated C's in CpG context
18750
Methylated C's in CHG context
1839
Methylated C's in CHH context
61919
Methylated C's in Unknown context
713
Unmethylated C's in CpG context
17118
Unmethylated C's in CHG context
48319
Unmethylated C's in CHH context
137398
Unmethylated C's in Unknown context
1139
Percentage methylation (CpG context)
52.3%
Percentage methylation (CHG context)
3.7%
Percentage methylation (CHH context)
31.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5077
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5022
original bottom strand
Deduplication
Alignments analysed
10099
Unique alignments
8574
Duplicates removed
1525
Duplicated alignments were found at 1205 different positions
