CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 261 85 75.43 346 2 277 86 76.31 363 3 232 90 72.05 322 4 236 96 71.08 332 5 252 80 75.90 332 6 247 86 74.17 333 7 251 93 72.97 344 8 254 96 72.57 350 9 241 81 74.84 322 10 270 97 73.57 367 11 253 89 73.98 342 12 268 84 76.14 352 13 254 86 74.71 340 14 257 113 69.46 370 15 254 73 77.68 327 16 254 95 72.78 349 17 261 94 73.52 355 18 220 72 75.34 292 19 216 88 71.05 304 20 276 94 74.59 370 21 248 92 72.94 340 22 236 76 75.64 312 23 252 81 75.68 333 24 274 88 75.69 362 25 275 90 75.34 365 26 255 94 73.07 349 27 284 89 76.14 373 28 276 100 73.40 376 29 234 93 71.56 327 30 265 84 75.93 349 31 240 75 76.19 315 32 252 85 74.78 337 33 246 110 69.10 356 34 257 71 78.35 328 35 240 95 71.64 335 36 280 82 77.35 362 37 231 71 76.49 302 38 239 83 74.22 322 39 241 82 74.61 323 40 231 72 76.24 303 41 231 86 72.87 317 42 240 90 72.73 330 43 245 75 76.56 320 44 224 73 75.42 297 45 256 79 76.42 335 46 218 88 71.24 306 47 219 74 74.74 293 48 226 97 69.97 323 49 239 63 79.14 302 50 221 55 80.07 276 51 246 57 81.19 303 52 219 69 76.04 288 53 196 58 77.17 254 54 197 67 74.62 264 55 212 77 73.36 289 56 213 68 75.80 281 57 184 61 75.10 245 58 206 53 79.54 259 59 188 71 72.59 259 60 214 68 75.89 282 61 197 62 76.06 259 62 207 70 74.73 277 63 187 50 78.90 237 64 171 56 75.33 227 65 180 58 75.63 238 66 175 66 72.61 241 67 174 56 75.65 230 68 144 49 74.61 193 69 156 63 71.23 219 70 156 53 74.64 209 71 171 41 80.66 212 72 157 57 73.36 214 73 139 41 77.22 180 74 130 52 71.43 182 75 154 52 74.76 206 76 158 55 74.18 213 77 127 47 72.99 174 78 149 49 75.25 198 79 147 48 75.38 195 80 146 47 75.65 193 81 136 42 76.40 178 82 119 37 76.28 156 83 125 46 73.10 171 84 129 34 79.14 163 85 123 28 81.46 151 86 113 45 71.52 158 87 121 40 75.16 161 88 105 51 67.31 156 89 128 35 78.53 163 90 116 53 68.64 169 91 90 43 67.67 133 92 106 30 77.94 136 93 98 34 74.24 132 94 87 29 75.00 116 95 110 28 79.71 138 96 94 24 79.66 118 97 99 24 80.49 123 98 110 36 75.34 146 99 87 29 75.00 116 100 85 32 72.65 117 101 80 35 69.57 115 102 82 32 71.93 114 103 77 30 71.96 107 104 81 26 75.70 107 105 61 27 69.32 88 106 61 31 66.30 92 107 74 22 77.08 96 108 73 19 79.35 92 109 74 19 79.57 93 110 76 18 80.85 94 111 56 24 70.00 80 112 64 27 70.33 91 113 58 27 68.24 85 114 74 15 83.15 89 115 59 25 70.24 84 116 66 29 69.47 95 117 53 20 72.60 73 118 49 25 66.22 74 119 50 24 67.57 74 120 56 20 73.68 76 121 47 16 74.60 63 122 58 14 80.56 72 123 40 21 65.57 61 124 39 22 63.93 61 125 59 9 86.76 68 126 48 22 68.57 70 127 60 22 73.17 82 128 41 14 74.55 55 129 42 24 63.64 66 130 38 17 69.09 55 131 39 12 76.47 51 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47 378 11.06 425 2 20 373 5.09 393 3 19 365 4.95 384 4 10 396 2.46 406 5 18 392 4.39 410 6 16 404 3.81 420 7 15 365 3.95 380 8 15 348 4.13 363 9 11 416 2.58 427 10 15 392 3.69 407 11 18 379 4.53 397 12 13 418 3.02 431 13 12 409 2.85 421 14 16 419 3.68 435 15 13 433 2.91 446 16 10 387 2.52 397 17 12 377 3.08 389 18 11 380 2.81 391 19 9 434 2.03 443 20 13 437 2.89 450 21 5 415 1.19 420 22 12 418 2.79 430 23 11 430 2.49 441 24 7 425 1.62 432 25 9 400 2.20 409 26 9 401 2.20 410 27 6 427 1.39 433 28 14 423 3.20 437 29 11 422 2.54 433 30 11 396 2.70 407 31 12 411 2.84 423 32 11 419 2.56 430 33 10 386 2.53 396 34 6 377 1.57 383 35 20 425 4.49 445 36 6 360 1.64 366 37 14 408 3.32 422 38 15 379 3.81 394 39 14 374 3.61 388 40 8 411 1.91 419 41 2 338 0.59 340 42 8 411 1.91 419 43 6 373 1.58 379 44 4 389 1.02 393 45 12 383 3.04 395 46 5 330 1.49 335 47 7 354 1.94 361 48 7 371 1.85 378 49 14 325 4.13 339 50 5 366 1.35 371 51 10 335 2.90 345 52 6 335 1.76 341 53 6 296 1.99 302 54 5 298 1.65 303 55 5 334 1.47 339 56 9 323 2.71 332 57 10 307 3.15 317 58 11 282 3.75 293 59 16 327 4.66 343 60 11 284 3.73 295 61 6 287 2.05 293 62 2 280 0.71 282 63 9 278 3.14 287 64 11 255 4.14 266 65 2 271 0.73 273 66 1 257 0.39 258 67 3 263 1.13 266 68 5 241 2.03 246 69 5 269 1.82 274 70 5 262 1.87 267 71 9 243 3.57 252 72 9 208 4.15 217 73 5 247 1.98 252 74 4 210 1.87 214 75 2 280 0.71 282 76 6 220 2.65 226 77 7 233 2.92 240 78 5 237 2.07 242 79 3 221 1.34 224 80 5 207 2.36 212 81 3 226 1.31 229 82 9 206 4.19 215 83 6 227 2.58 233 84 3 205 1.44 208 85 2 223 0.89 225 86 10 180 5.26 190 87 2 195 1.02 197 88 7 180 3.74 187 89 6 179 3.24 185 90 4 158 2.47 162 91 5 174 2.79 179 92 5 174 2.79 179 93 3 190 1.55 193 94 7 153 4.38 160 95 3 157 1.88 160 96 1 157 0.63 158 97 0 144 0.00 144 98 3 159 1.85 162 99 2 145 1.36 147 100 2 138 1.43 140 101 7 140 4.76 147 102 3 142 2.07 145 103 2 129 1.53 131 104 2 125 1.57 127 105 5 151 3.21 156 106 3 126 2.33 129 107 1 132 0.75 133 108 5 116 4.13 121 109 3 127 2.31 130 110 3 108 2.70 111 111 3 124 2.36 127 112 2 113 1.74 115 113 3 99 2.94 102 114 4 97 3.96 101 115 1 103 0.96 104 116 0 110 0.00 110 117 2 89 2.20 91 118 1 107 0.93 108 119 0 92 0.00 92 120 1 83 1.19 84 121 1 107 0.93 108 122 3 90 3.23 93 123 1 81 1.22 82 124 3 79 3.66 82 125 1 85 1.16 86 126 1 94 1.05 95 127 0 87 0.00 87 128 1 67 1.47 68 129 2 71 2.74 73 130 4 65 5.80 69 131 0 53 0.00 53 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 224 974 18.70 1198 2 217 1011 17.67 1228 3 211 1042 16.84 1253 4 211 1031 16.99 1242 5 172 1040 14.19 1212 6 187 995 15.82 1182 7 180 960 15.79 1140 8 194 994 16.33 1188 9 178 936 15.98 1114 10 198 994 16.61 1192 11 182 1000 15.40 1182 12 186 1057 14.96 1243 13 202 1065 15.94 1267 14 179 1084 14.17 1263 15 186 1017 15.46 1203 16 179 989 15.33 1168 17 180 1067 14.43 1247 18 209 1136 15.54 1345 19 178 1080 14.15 1258 20 183 1062 14.70 1245 21 185 1060 14.86 1245 22 182 1056 14.70 1238 23 176 1092 13.88 1268 24 225 1075 17.31 1300 25 178 1064 14.33 1242 26 176 1055 14.30 1231 27 188 1060 15.06 1248 28 191 1133 14.43 1324 29 191 1114 14.64 1305 30 182 1092 14.29 1274 31 185 1076 14.67 1261 32 152 1056 12.58 1208 33 165 1036 13.74 1201 34 167 1095 13.23 1262 35 155 1055 12.81 1210 36 169 1083 13.50 1252 37 151 999 13.13 1150 38 160 993 13.88 1153 39 151 1027 12.82 1178 40 121 1005 10.75 1126 41 135 1011 11.78 1146 42 124 1037 10.68 1161 43 151 969 13.48 1120 44 136 1030 11.66 1166 45 148 1020 12.67 1168 46 143 1034 12.15 1177 47 127 988 11.39 1115 48 131 917 12.50 1048 49 127 968 11.60 1095 50 102 951 9.69 1053 51 116 930 11.09 1046 52 114 863 11.67 977 53 122 923 11.67 1045 54 114 920 11.03 1034 55 108 886 10.87 994 56 110 888 11.02 998 57 112 858 11.55 970 58 103 897 10.30 1000 59 99 838 10.57 937 60 102 843 10.79 945 61 90 807 10.03 897 62 105 837 11.15 942 63 97 744 11.53 841 64 92 762 10.77 854 65 92 773 10.64 865 66 80 750 9.64 830 67 84 752 10.05 836 68 77 759 9.21 836 69 82 753 9.82 835 70 78 709 9.91 787 71 75 688 9.83 763 72 65 714 8.34 779 73 74 684 9.76 758 74 72 684 9.52 756 75 71 609 10.44 680 76 66 688 8.75 754 77 78 608 11.37 686 78 75 612 10.92 687 79 68 600 10.18 668 80 63 586 9.71 649 81 55 580 8.66 635 82 61 581 9.50 642 83 57 566 9.15 623 84 71 573 11.02 644 85 51 564 8.29 615 86 65 545 10.66 610 87 42 542 7.19 584 88 58 537 9.75 595 89 48 486 8.99 534 90 43 529 7.52 572 91 49 498 8.96 547 92 36 493 6.81 529 93 41 467 8.07 508 94 43 480 8.22 523 95 35 456 7.13 491 96 46 461 9.07 507 97 42 428 8.94 470 98 39 421 8.48 460 99 43 418 9.33 461 100 34 403 7.78 437 101 35 399 8.06 434 102 36 416 7.96 452 103 37 377 8.94 414 104 39 379 9.33 418 105 39 360 9.77 399 106 34 354 8.76 388 107 34 333 9.26 367 108 26 322 7.47 348 109 31 323 8.76 354 110 33 342 8.80 375 111 28 320 8.05 348 112 26 317 7.58 343 113 29 296 8.92 325 114 23 286 7.44 309 115 24 298 7.45 322 116 20 282 6.62 302 117 22 278 7.33 300 118 23 302 7.08 325 119 23 291 7.32 314 120 18 270 6.25 288 121 21 277 7.05 298 122 17 254 6.27 271 123 21 265 7.34 286 124 24 243 8.99 267 125 12 256 4.48 268 126 15 246 5.75 261 127 13 215 5.70 228 128 16 217 6.87 233 129 18 230 7.26 248 130 16 222 6.72 238 131 8 146 5.19 154 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 14 71.43 49 2 39 12 76.47 51 3 65 19 77.38 84 4 31 25 55.36 56 5 32 10 76.19 42 6 32 18 64.00 50 7 39 18 68.42 57 8 45 15 75.00 60 9 38 23 62.30 61 10 36 13 73.47 49 11 34 24 58.62 58 12 35 13 72.92 48 13 28 19 59.57 47 14 35 16 68.63 51 15 24 14 63.16 38 16 22 13 62.86 35 17 31 13 70.45 44 18 15 15 50.00 30 19 27 5 84.38 32 20 29 8 78.38 37 21 25 11 69.44 36 22 25 6 80.65 31 23 27 13 67.50 40 24 21 6 77.78 27 25 24 10 70.59 34 26 28 7 80.00 35 27 15 10 60.00 25 28 24 8 75.00 32 29 27 12 69.23 39 30 22 10 68.75 32 31 31 3 91.18 34 32 20 16 55.56 36 33 16 3 84.21 19 34 27 7 79.41 34 35 24 10 70.59 34 36 21 6 77.78 27 37 21 7 75.00 28 38 17 7 70.83 24 39 17 5 77.27 22 40 18 5 78.26 23 41 6 6 50.00 12 42 12 4 75.00 16 43 16 6 72.73 22 44 9 5 64.29 14 45 14 3 82.35 17 46 13 5 72.22 18 47 14 7 66.67 21 48 19 3 86.36 22 49 8 3 72.73 11 50 12 5 70.59 17 51 9 5 64.29 14 52 15 10 60.00 25 53 10 3 76.92 13 54 6 5 54.55 11 55 14 5 73.68 19 56 12 6 66.67 18 57 13 4 76.47 17 58 9 2 81.82 11 59 10 3 76.92 13 60 9 6 60.00 15 61 11 3 78.57 14 62 8 5 61.54 13 63 12 5 70.59 17 64 4 1 80.00 5 65 10 5 66.67 15 66 6 3 66.67 9 67 6 3 66.67 9 68 10 3 76.92 13 69 3 4 42.86 7 70 7 5 58.33 12 71 7 4 63.64 11 72 8 2 80.00 10 73 4 7 36.36 11 74 7 2 77.78 9 75 5 2 71.43 7 76 5 0 100.00 5 77 2 3 40.00 5 78 4 8 33.33 12 79 9 1 90.00 10 80 10 3 76.92 13 81 4 4 50.00 8 82 2 2 50.00 4 83 4 3 57.14 7 84 5 2 71.43 7 85 9 4 69.23 13 86 4 3 57.14 7 87 2 2 50.00 4 88 7 1 87.50 8 89 1 2 33.33 3 90 4 2 66.67 6 91 4 1 80.00 5 92 4 3 57.14 7 93 3 2 60.00 5 94 3 3 50.00 6 95 2 0 100.00 2 96 1 1 50.00 2 97 3 2 60.00 5 98 4 2 66.67 6 99 2 2 50.00 4 100 3 0 100.00 3 101 1 1 50.00 2 102 1 1 50.00 2 103 4 0 100.00 4 104 4 1 80.00 5 105 0 5 0.00 5 106 1 1 50.00 2 107 2 1 66.67 3 108 3 1 75.00 4 109 1 0 100.00 1 110 1 2 33.33 3 111 2 0 100.00 2 112 3 2 60.00 5 113 3 2 60.00 5 114 1 2 33.33 3 115 1 0 100.00 1 116 1 1 50.00 2 117 1 0 100.00 1 118 2 2 50.00 4 119 0 4 0.00 4 120 1 1 50.00 2 121 2 1 66.67 3 122 3 1 75.00 4 123 6 2 75.00 8 124 2 1 66.67 3 125 0 0 0 126 1 0 100.00 1 127 1 2 33.33 3 128 0 0 0 129 0 0 0 130 1 0 100.00 1 131 1 1 50.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 68 0.00 68 2 6 72 7.69 78 3 10 85 10.53 95 4 2 93 2.11 95 5 1 66 1.49 67 6 1 66 1.49 67 7 2 55 3.51 57 8 1 86 1.15 87 9 3 63 4.55 66 10 0 53 0.00 53 11 2 53 3.64 55 12 1 84 1.18 85 13 1 60 1.64 61 14 0 65 0.00 65 15 1 63 1.56 64 16 2 47 4.08 49 17 1 61 1.61 62 18 0 54 0.00 54 19 0 47 0.00 47 20 2 49 3.92 51 21 0 57 0.00 57 22 1 39 2.50 40 23 3 48 5.88 51 24 0 44 0.00 44 25 0 34 0.00 34 26 1 39 2.50 40 27 0 43 0.00 43 28 1 36 2.70 37 29 0 34 0.00 34 30 1 42 2.33 43 31 0 38 0.00 38 32 2 36 5.26 38 33 0 45 0.00 45 34 0 23 0.00 23 35 0 33 0.00 33 36 0 35 0.00 35 37 0 37 0.00 37 38 0 29 0.00 29 39 0 34 0.00 34 40 0 23 0.00 23 41 0 30 0.00 30 42 0 20 0.00 20 43 0 21 0.00 21 44 0 38 0.00 38 45 0 25 0.00 25 46 1 25 3.85 26 47 0 28 0.00 28 48 1 27 3.57 28 49 0 22 0.00 22 50 0 18 0.00 18 51 0 19 0.00 19 52 0 21 0.00 21 53 0 21 0.00 21 54 0 28 0.00 28 55 0 25 0.00 25 56 0 20 0.00 20 57 0 22 0.00 22 58 0 15 0.00 15 59 0 14 0.00 14 60 0 16 0.00 16 61 0 14 0.00 14 62 1 19 5.00 20 63 0 13 0.00 13 64 0 19 0.00 19 65 1 10 9.09 11 66 0 19 0.00 19 67 0 17 0.00 17 68 0 13 0.00 13 69 0 11 0.00 11 70 0 14 0.00 14 71 1 10 9.09 11 72 0 12 0.00 12 73 0 14 0.00 14 74 0 15 0.00 15 75 0 9 0.00 9 76 0 14 0.00 14 77 0 6 0.00 6 78 0 7 0.00 7 79 0 4 0.00 4 80 0 11 0.00 11 81 1 14 6.67 15 82 0 5 0.00 5 83 0 9 0.00 9 84 0 9 0.00 9 85 1 9 10.00 10 86 0 9 0.00 9 87 0 4 0.00 4 88 0 7 0.00 7 89 0 7 0.00 7 90 0 4 0.00 4 91 0 7 0.00 7 92 0 5 0.00 5 93 0 8 0.00 8 94 0 6 0.00 6 95 0 9 0.00 9 96 0 3 0.00 3 97 0 6 0.00 6 98 0 8 0.00 8 99 0 6 0.00 6 100 0 7 0.00 7 101 0 7 0.00 7 102 0 4 0.00 4 103 0 5 0.00 5 104 0 3 0.00 3 105 0 2 0.00 2 106 0 5 0.00 5 107 1 3 25.00 4 108 0 6 0.00 6 109 0 4 0.00 4 110 0 3 0.00 3 111 0 2 0.00 2 112 0 1 0.00 1 113 1 1 50.00 2 114 0 4 0.00 4 115 0 5 0.00 5 116 0 2 0.00 2 117 0 5 0.00 5 118 1 4 20.00 5 119 0 4 0.00 4 120 0 0 0 121 0 3 0.00 3 122 0 2 0.00 2 123 0 3 0.00 3 124 0 7 0.00 7 125 0 6 0.00 6 126 0 2 0.00 2 127 0 2 0.00 2 128 0 3 0.00 3 129 0 2 0.00 2 130 0 2 0.00 2 131 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 24 223 9.72 247 2 13 197 6.19 210 3 29 207 12.29 236 4 15 212 6.61 227 5 25 193 11.47 218 6 14 160 8.05 174 7 21 162 11.48 183 8 15 173 7.98 188 9 19 189 9.13 208 10 14 167 7.73 181 11 25 160 13.51 185 12 14 160 8.05 174 13 16 192 7.69 208 14 10 177 5.35 187 15 23 168 12.04 191 16 17 153 10.00 170 17 20 182 9.90 202 18 13 133 8.90 146 19 19 153 11.05 172 20 15 122 10.95 137 21 12 141 7.84 153 22 16 125 11.35 141 23 17 137 11.04 154 24 10 116 7.94 126 25 15 134 10.07 149 26 17 110 13.39 127 27 12 128 8.57 140 28 12 106 10.17 118 29 12 126 8.70 138 30 14 116 10.77 130 31 16 131 10.88 147 32 11 118 8.53 129 33 11 113 8.87 124 34 11 118 8.53 129 35 15 108 12.20 123 36 11 107 9.32 118 37 12 105 10.26 117 38 11 100 9.91 111 39 12 113 9.60 125 40 12 107 10.08 119 41 11 87 11.22 98 42 7 98 6.67 105 43 9 100 8.26 109 44 10 84 10.64 94 45 11 93 10.58 104 46 9 65 12.16 74 47 7 90 7.22 97 48 11 69 13.75 80 49 10 69 12.66 79 50 8 74 9.76 82 51 5 74 6.33 79 52 6 66 8.33 72 53 7 71 8.97 78 54 6 77 7.23 83 55 6 64 8.57 70 56 8 59 11.94 67 57 5 67 6.94 72 58 5 65 7.14 70 59 8 57 12.31 65 60 6 55 9.84 61 61 8 51 13.56 59 62 6 46 11.54 52 63 8 64 11.11 72 64 5 46 9.80 51 65 6 49 10.91 55 66 9 53 14.52 62 67 7 61 10.29 68 68 4 47 7.84 51 69 10 48 17.24 58 70 3 56 5.08 59 71 7 47 12.96 54 72 3 41 6.82 44 73 4 42 8.70 46 74 6 42 12.50 48 75 5 46 9.80 51 76 5 41 10.87 46 77 6 44 12.00 50 78 4 45 8.16 49 79 7 47 12.96 54 80 2 38 5.00 40 81 8 42 16.00 50 82 5 51 8.93 56 83 5 34 12.82 39 84 3 32 8.57 35 85 4 39 9.30 43 86 3 48 5.88 51 87 5 39 11.36 44 88 4 35 10.26 39 89 5 36 12.20 41 90 3 25 10.71 28 91 5 32 13.51 37 92 2 33 5.71 35 93 6 27 18.18 33 94 3 26 10.34 29 95 2 22 8.33 24 96 1 30 3.23 31 97 3 25 10.71 28 98 1 24 4.00 25 99 4 22 15.38 26 100 1 21 4.55 22 101 3 21 12.50 24 102 0 25 0.00 25 103 4 24 14.29 28 104 2 18 10.00 20 105 2 22 8.33 24 106 3 22 12.00 25 107 3 19 13.64 22 108 1 16 5.88 17 109 3 24 11.11 27 110 0 17 0.00 17 111 1 17 5.56 18 112 1 15 6.25 16 113 2 18 10.00 20 114 1 14 6.67 15 115 3 14 17.65 17 116 1 20 4.76 21 117 3 18 14.29 21 118 0 16 0.00 16 119 3 20 13.04 23 120 0 20 0.00 20 121 2 15 11.76 17 122 2 13 13.33 15 123 3 16 15.79 19 124 2 14 12.50 16 125 1 12 7.69 13 126 0 16 0.00 16 127 2 17 10.53 19 128 1 13 7.14 14 129 1 14 6.67 15 130 0 9 0.00 9 131 1 0 100.00 1