/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11131
Pairs without alignments under any condition
25146
Pairs that did not map uniquely
3723
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
426598
Methylated C's in CpG context
53915
Methylated C's in CHG context
2172
Methylated C's in CHH context
29619
Methylated C's in Unknown context
433
Unmethylated C's in CpG context
18673
Unmethylated C's in CHG context
87164
Unmethylated C's in CHH context
235055
Unmethylated C's in Unknown context
1115
Percentage methylation (CpG context)
74.3%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
11.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5486
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5645
original bottom strand
Deduplication
Alignments analysed
11131
Unique alignments
9059
Duplicates removed
2072
Duplicated alignments were found at 1584 different positions
