/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7785
Pairs without alignments under any condition
26800
Pairs that did not map uniquely
5415
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
250884
Methylated C's in CpG context
7454
Methylated C's in CHG context
1258
Methylated C's in CHH context
43702
Methylated C's in Unknown context
475
Unmethylated C's in CpG context
25801
Unmethylated C's in CHG context
40628
Unmethylated C's in CHH context
132041
Unmethylated C's in Unknown context
1014
Percentage methylation (CpG context)
22.4%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
24.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3813
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3972
original bottom strand
Deduplication
Alignments analysed
7785
Unique alignments
6387
Duplicates removed
1398
Duplicated alignments were found at 1082 different positions
