CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 39 117 25.00 156 2 50 116 30.12 166 3 16 93 14.68 109 4 15 126 10.64 141 5 22 115 16.06 137 6 26 119 17.93 145 7 28 127 18.06 155 8 17 121 12.32 138 9 16 113 12.40 129 10 24 138 14.81 162 11 16 103 13.45 119 12 23 133 14.74 156 13 16 119 11.85 135 14 18 125 12.59 143 15 17 126 11.89 143 16 21 121 14.79 142 17 12 117 9.30 129 18 19 130 12.75 149 19 15 129 10.42 144 20 18 141 11.32 159 21 15 120 11.11 135 22 14 156 8.24 170 23 19 122 13.48 141 24 25 118 17.48 143 25 15 125 10.71 140 26 11 128 7.91 139 27 13 128 9.22 141 28 18 128 12.33 146 29 23 123 15.75 146 30 20 127 13.61 147 31 17 120 12.41 137 32 7 125 5.30 132 33 12 91 11.65 103 34 19 138 12.10 157 35 11 105 9.48 116 36 20 125 13.79 145 37 21 113 15.67 134 38 15 131 10.27 146 39 21 111 15.91 132 40 17 114 12.98 131 41 15 89 14.42 104 42 15 116 11.45 131 43 11 82 11.83 93 44 17 111 13.28 128 45 15 106 12.40 121 46 14 101 12.17 115 47 16 95 14.41 111 48 7 108 6.09 115 49 12 102 10.53 114 50 13 102 11.30 115 51 6 84 6.67 90 52 6 111 5.13 117 53 11 75 12.79 86 54 19 110 14.73 129 55 8 82 8.89 90 56 12 89 11.88 101 57 9 77 10.47 86 58 14 82 14.58 96 59 8 76 9.52 84 60 8 67 10.67 75 61 9 78 10.34 87 62 13 68 16.05 81 63 20 89 18.35 109 64 6 72 7.69 78 65 8 66 10.81 74 66 12 84 12.50 96 67 15 81 15.62 96 68 10 70 12.50 80 69 9 77 10.47 86 70 6 77 7.23 83 71 5 74 6.33 79 72 10 80 11.11 90 73 9 53 14.52 62 74 8 68 10.53 76 75 6 59 9.23 65 76 6 56 9.68 62 77 4 54 6.90 58 78 7 45 13.46 52 79 7 67 9.46 74 80 2 37 5.13 39 81 8 61 11.59 69 82 4 56 6.67 60 83 4 61 6.15 65 84 4 44 8.33 48 85 6 62 8.82 68 86 8 50 13.79 58 87 4 45 8.16 49 88 2 45 4.26 47 89 2 43 4.44 45 90 10 51 16.39 61 91 2 45 4.26 47 92 0 46 0.00 46 93 5 47 9.62 52 94 7 43 14.00 50 95 4 45 8.16 49 96 4 37 9.76 41 97 2 42 4.55 44 98 4 43 8.51 47 99 5 37 11.90 42 100 3 31 8.82 34 101 4 37 9.76 41 102 5 36 12.20 41 103 6 32 15.79 38 104 2 29 6.45 31 105 6 22 21.43 28 106 5 36 12.20 41 107 3 36 7.69 39 108 2 34 5.56 36 109 5 23 17.86 28 110 7 27 20.59 34 111 4 32 11.11 36 112 6 33 15.38 39 113 2 22 8.33 24 114 5 28 15.15 33 115 3 28 9.68 31 116 6 21 22.22 27 117 5 20 20.00 25 118 5 17 22.73 22 119 3 22 12.00 25 120 5 26 16.13 31 121 7 17 29.17 24 122 1 21 4.55 22 123 2 20 9.09 22 124 4 14 22.22 18 125 5 15 25.00 20 126 1 25 3.85 26 127 3 21 12.50 24 128 1 17 5.56 18 129 1 19 5.00 20 130 5 10 33.33 15 131 1 11 8.33 12 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72 148 32.73 220 2 17 152 10.06 169 3 14 135 9.40 149 4 15 173 7.98 188 5 11 159 6.47 170 6 24 150 13.79 174 7 10 162 5.81 172 8 9 153 5.56 162 9 7 146 4.58 153 10 8 140 5.41 148 11 5 179 2.72 184 12 7 163 4.12 170 13 7 144 4.64 151 14 10 159 5.92 169 15 6 145 3.97 151 16 8 157 4.85 165 17 8 172 4.44 180 18 7 147 4.55 154 19 5 162 2.99 167 20 8 143 5.30 151 21 6 155 3.73 161 22 11 149 6.88 160 23 12 157 7.10 169 24 5 149 3.25 154 25 9 179 4.79 188 26 3 171 1.72 174 27 6 159 3.64 165 28 11 152 6.75 163 29 7 151 4.43 158 30 7 160 4.19 167 31 6 159 3.64 165 32 4 149 2.61 153 33 5 152 3.18 157 34 6 141 4.08 147 35 6 166 3.49 172 36 5 173 2.81 178 37 3 143 2.05 146 38 5 124 3.88 129 39 3 136 2.16 139 40 6 122 4.69 128 41 3 136 2.16 139 42 2 163 1.21 165 43 7 129 5.15 136 44 6 140 4.11 146 45 6 142 4.05 148 46 3 133 2.21 136 47 6 129 4.44 135 48 2 120 1.64 122 49 5 134 3.60 139 50 3 117 2.50 120 51 5 113 4.24 118 52 3 122 2.40 125 53 7 147 4.55 154 54 6 109 5.22 115 55 4 101 3.81 105 56 4 110 3.51 114 57 6 131 4.38 137 58 1 120 0.83 121 59 3 98 2.97 101 60 6 92 6.12 98 61 2 82 2.38 84 62 4 115 3.36 119 63 1 90 1.10 91 64 4 97 3.96 101 65 1 111 0.89 112 66 3 95 3.06 98 67 5 93 5.10 98 68 3 91 3.19 94 69 3 102 2.86 105 70 0 94 0.00 94 71 2 88 2.22 90 72 3 77 3.75 80 73 0 80 0.00 80 74 1 87 1.14 88 75 0 74 0.00 74 76 2 70 2.78 72 77 3 66 4.35 69 78 2 62 3.12 64 79 2 68 2.86 70 80 3 68 4.23 71 81 1 56 1.75 57 82 0 68 0.00 68 83 3 73 3.95 76 84 3 72 4.00 75 85 2 58 3.33 60 86 1 58 1.69 59 87 0 63 0.00 63 88 2 65 2.99 67 89 1 54 1.82 55 90 1 49 2.00 50 91 2 41 4.65 43 92 2 49 3.92 51 93 2 55 3.51 57 94 1 44 2.22 45 95 4 49 7.55 53 96 2 44 4.35 46 97 0 43 0.00 43 98 1 43 2.27 44 99 1 39 2.50 40 100 0 36 0.00 36 101 2 49 3.92 51 102 3 47 6.00 50 103 0 42 0.00 42 104 0 26 0.00 26 105 2 40 4.76 42 106 3 36 7.69 39 107 4 41 8.89 45 108 4 39 9.30 43 109 0 30 0.00 30 110 0 31 0.00 31 111 0 25 0.00 25 112 3 31 8.82 34 113 0 32 0.00 32 114 1 44 2.22 45 115 0 24 0.00 24 116 0 22 0.00 22 117 1 32 3.03 33 118 2 33 5.71 35 119 3 27 10.00 30 120 2 23 8.00 25 121 1 17 5.56 18 122 2 22 8.33 24 123 4 24 14.29 28 124 3 18 14.29 21 125 0 18 0.00 18 126 2 26 7.14 28 127 5 10 33.33 15 128 4 19 17.39 23 129 1 24 4.00 25 130 2 18 10.00 20 131 0 9 0.00 9 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 371 464 44.43 835 2 354 476 42.65 830 3 298 483 38.16 781 4 346 537 39.18 883 5 311 524 37.25 835 6 381 489 43.79 870 7 300 508 37.13 808 8 354 498 41.55 852 9 396 477 45.36 873 10 368 505 42.15 873 11 353 480 42.38 833 12 376 465 44.71 841 13 378 473 44.42 851 14 389 487 44.41 876 15 348 518 40.18 866 16 379 519 42.20 898 17 365 541 40.29 906 18 405 539 42.90 944 19 407 529 43.48 936 20 375 572 39.60 947 21 374 540 40.92 914 22 395 560 41.36 955 23 381 531 41.78 912 24 421 550 43.36 971 25 376 496 43.12 872 26 371 486 43.29 857 27 367 512 41.75 879 28 386 517 42.75 903 29 416 512 44.83 928 30 393 506 43.72 899 31 371 476 43.80 847 32 390 528 42.48 918 33 373 499 42.78 872 34 375 480 43.86 855 35 362 483 42.84 845 36 374 492 43.19 866 37 364 450 44.72 814 38 373 497 42.87 870 39 368 456 44.66 824 40 338 463 42.20 801 41 329 456 41.91 785 42 333 453 42.37 786 43 318 465 40.61 783 44 355 461 43.50 816 45 303 434 41.11 737 46 348 428 44.85 776 47 313 418 42.82 731 48 319 442 41.92 761 49 331 389 45.97 720 50 315 399 44.12 714 51 288 402 41.74 690 52 312 396 44.07 708 53 295 385 43.38 680 54 303 367 45.22 670 55 282 345 44.98 627 56 287 370 43.68 657 57 265 346 43.37 611 58 288 334 46.30 622 59 270 364 42.59 634 60 270 353 43.34 623 61 248 333 42.69 581 62 277 352 44.04 629 63 255 303 45.70 558 64 277 319 46.48 596 65 241 316 43.27 557 66 248 325 43.28 573 67 216 330 39.56 546 68 240 279 46.24 519 69 226 294 43.46 520 70 228 263 46.44 491 71 224 279 44.53 503 72 230 276 45.45 506 73 212 278 43.27 490 74 218 259 45.70 477 75 191 243 44.01 434 76 212 255 45.40 467 77 180 270 40.00 450 78 209 241 46.44 450 79 171 234 42.22 405 80 189 226 45.54 415 81 150 247 37.78 397 82 193 225 46.17 418 83 156 209 42.74 365 84 195 210 48.15 405 85 147 201 42.24 348 86 172 195 46.87 367 87 132 213 38.26 345 88 161 216 42.71 377 89 139 199 41.12 338 90 161 181 47.08 342 91 121 200 37.69 321 92 159 180 46.90 339 93 110 172 39.01 282 94 164 175 48.38 339 95 101 148 40.56 249 96 146 156 48.34 302 97 96 178 35.04 274 98 139 163 46.03 302 99 91 164 35.69 255 100 131 144 47.64 275 101 85 154 35.56 239 102 120 127 48.58 247 103 88 144 37.93 232 104 112 140 44.44 252 105 59 147 28.64 206 106 110 140 44.00 250 107 61 121 33.52 182 108 108 128 45.76 236 109 71 128 35.68 199 110 90 122 42.45 212 111 63 136 31.66 199 112 84 126 40.00 210 113 58 109 34.73 167 114 96 97 49.74 193 115 50 98 33.78 148 116 86 89 49.14 175 117 54 119 31.21 173 118 88 88 50.00 176 119 62 91 40.52 153 120 67 108 38.29 175 121 49 107 31.41 156 122 74 101 42.29 175 123 42 92 31.34 134 124 64 98 39.51 162 125 40 83 32.52 123 126 66 95 40.99 161 127 48 86 35.82 134 128 63 77 45.00 140 129 41 77 34.75 118 130 41 71 36.61 112 131 18 53 25.35 71 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 26 16.13 31 2 13 16 44.83 29 3 21 24 46.67 45 4 3 20 13.04 23 5 3 10 23.08 13 6 2 16 11.11 18 7 2 15 11.76 17 8 1 18 5.26 19 9 1 21 4.55 22 10 2 16 11.11 18 11 1 22 4.35 23 12 3 19 13.64 22 13 1 14 6.67 15 14 0 14 0.00 14 15 7 13 35.00 20 16 2 16 11.11 18 17 1 12 7.69 13 18 2 9 18.18 11 19 0 13 0.00 13 20 1 11 8.33 12 21 3 12 20.00 15 22 0 1 0.00 1 23 0 14 0.00 14 24 1 4 20.00 5 25 3 9 25.00 12 26 0 9 0.00 9 27 1 10 9.09 11 28 3 8 27.27 11 29 0 7 0.00 7 30 0 10 0.00 10 31 0 5 0.00 5 32 1 9 10.00 10 33 0 11 0.00 11 34 0 4 0.00 4 35 0 5 0.00 5 36 0 9 0.00 9 37 0 5 0.00 5 38 1 7 12.50 8 39 0 8 0.00 8 40 1 2 33.33 3 41 1 7 12.50 8 42 1 4 20.00 5 43 1 3 25.00 4 44 1 4 20.00 5 45 0 5 0.00 5 46 0 5 0.00 5 47 1 4 20.00 5 48 0 5 0.00 5 49 0 4 0.00 4 50 0 6 0.00 6 51 1 6 14.29 7 52 0 1 0.00 1 53 0 5 0.00 5 54 0 5 0.00 5 55 1 6 14.29 7 56 1 1 50.00 2 57 0 3 0.00 3 58 0 3 0.00 3 59 0 4 0.00 4 60 0 5 0.00 5 61 0 2 0.00 2 62 0 3 0.00 3 63 1 5 16.67 6 64 1 3 25.00 4 65 1 3 25.00 4 66 1 4 20.00 5 67 0 1 0.00 1 68 0 3 0.00 3 69 1 1 50.00 2 70 0 1 0.00 1 71 1 1 50.00 2 72 2 3 40.00 5 73 0 2 0.00 2 74 0 7 0.00 7 75 0 2 0.00 2 76 0 3 0.00 3 77 0 3 0.00 3 78 0 2 0.00 2 79 0 1 0.00 1 80 0 1 0.00 1 81 0 1 0.00 1 82 0 3 0.00 3 83 0 1 0.00 1 84 1 3 25.00 4 85 0 1 0.00 1 86 1 1 50.00 2 87 0 3 0.00 3 88 0 0 0 89 0 2 0.00 2 90 0 3 0.00 3 91 0 1 0.00 1 92 0 2 0.00 2 93 0 2 0.00 2 94 1 1 50.00 2 95 0 2 0.00 2 96 0 1 0.00 1 97 0 1 0.00 1 98 0 1 0.00 1 99 0 3 0.00 3 100 0 0 0 101 0 1 0.00 1 102 0 1 0.00 1 103 0 1 0.00 1 104 1 0 100.00 1 105 0 1 0.00 1 106 0 0 0 107 0 2 0.00 2 108 0 1 0.00 1 109 0 0 0 110 0 2 0.00 2 111 0 0 0 112 0 2 0.00 2 113 0 0 0 114 0 2 0.00 2 115 1 0 100.00 1 116 0 0 0 117 1 0 100.00 1 118 0 3 0.00 3 119 1 0 100.00 1 120 0 0 0 121 1 2 33.33 3 122 0 0 0 123 0 0 0 124 0 1 0.00 1 125 0 0 0 126 0 1 0.00 1 127 0 0 0 128 0 1 0.00 1 129 0 0 0 130 0 1 0.00 1 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 14 0.00 14 2 4 28 12.50 32 3 10 39 20.41 49 4 2 60 3.23 62 5 3 16 15.79 19 6 0 13 0.00 13 7 2 26 7.14 28 8 8 18 30.77 26 9 0 24 0.00 24 10 0 15 0.00 15 11 0 21 0.00 21 12 1 30 3.23 31 13 0 22 0.00 22 14 1 18 5.26 19 15 1 16 5.88 17 16 0 14 0.00 14 17 2 15 11.76 17 18 2 13 13.33 15 19 2 12 14.29 14 20 0 13 0.00 13 21 1 19 5.00 20 22 0 14 0.00 14 23 0 11 0.00 11 24 0 11 0.00 11 25 0 9 0.00 9 26 2 7 22.22 9 27 1 6 14.29 7 28 0 8 0.00 8 29 1 9 10.00 10 30 0 12 0.00 12 31 0 16 0.00 16 32 0 5 0.00 5 33 0 8 0.00 8 34 0 10 0.00 10 35 1 6 14.29 7 36 0 7 0.00 7 37 1 4 20.00 5 38 1 8 11.11 9 39 0 8 0.00 8 40 0 2 0.00 2 41 0 5 0.00 5 42 1 9 10.00 10 43 1 8 11.11 9 44 0 7 0.00 7 45 0 7 0.00 7 46 0 7 0.00 7 47 0 2 0.00 2 48 1 7 12.50 8 49 1 2 33.33 3 50 0 3 0.00 3 51 0 3 0.00 3 52 0 2 0.00 2 53 0 3 0.00 3 54 0 4 0.00 4 55 0 3 0.00 3 56 0 2 0.00 2 57 1 0 100.00 1 58 1 2 33.33 3 59 0 2 0.00 2 60 1 4 20.00 5 61 0 6 0.00 6 62 0 1 0.00 1 63 0 4 0.00 4 64 1 2 33.33 3 65 0 1 0.00 1 66 0 3 0.00 3 67 0 3 0.00 3 68 0 4 0.00 4 69 0 3 0.00 3 70 0 0 0 71 0 3 0.00 3 72 1 0 100.00 1 73 0 5 0.00 5 74 0 3 0.00 3 75 0 2 0.00 2 76 0 4 0.00 4 77 0 2 0.00 2 78 0 2 0.00 2 79 0 1 0.00 1 80 0 2 0.00 2 81 1 0 100.00 1 82 0 2 0.00 2 83 0 5 0.00 5 84 0 0 0 85 0 2 0.00 2 86 0 3 0.00 3 87 0 1 0.00 1 88 0 2 0.00 2 89 0 2 0.00 2 90 0 1 0.00 1 91 0 0 0 92 0 1 0.00 1 93 1 1 50.00 2 94 0 0 0 95 0 1 0.00 1 96 0 0 0 97 2 2 50.00 4 98 0 2 0.00 2 99 1 1 50.00 2 100 0 1 0.00 1 101 1 1 50.00 2 102 0 2 0.00 2 103 0 1 0.00 1 104 0 1 0.00 1 105 1 2 33.33 3 106 0 0 0 107 2 1 66.67 3 108 0 2 0.00 2 109 0 0 0 110 0 1 0.00 1 111 0 1 0.00 1 112 0 1 0.00 1 113 0 2 0.00 2 114 0 1 0.00 1 115 1 1 50.00 2 116 0 1 0.00 1 117 0 1 0.00 1 118 0 0 0 119 0 2 0.00 2 120 0 1 0.00 1 121 1 0 100.00 1 122 0 2 0.00 2 123 0 1 0.00 1 124 0 0 0 125 0 0 0 126 0 0 0 127 0 0 0 128 1 1 50.00 2 129 0 1 0.00 1 130 0 1 0.00 1 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 94 84 52.81 178 2 51 76 40.16 127 3 93 77 54.71 170 4 46 110 29.49 156 5 81 74 52.26 155 6 38 73 34.23 111 7 91 61 59.87 152 8 57 60 48.72 117 9 89 57 60.96 146 10 65 60 52.00 125 11 87 61 58.78 148 12 64 74 46.38 138 13 93 64 59.24 157 14 65 76 46.10 141 15 77 56 57.89 133 16 67 81 45.27 148 17 71 51 58.20 122 18 51 58 46.79 109 19 68 46 59.65 114 20 53 50 51.46 103 21 69 46 60.00 115 22 49 50 49.49 99 23 69 47 59.48 116 24 46 51 47.42 97 25 66 50 56.90 116 26 45 54 45.45 99 27 60 43 58.25 103 28 45 63 41.67 108 29 56 47 54.37 103 30 40 51 43.96 91 31 69 45 60.53 114 32 40 45 47.06 85 33 62 47 56.88 109 34 37 45 45.12 82 35 63 45 58.33 108 36 44 40 52.38 84 37 52 44 54.17 96 38 41 41 50.00 82 39 55 47 53.92 102 40 39 37 51.32 76 41 52 37 58.43 89 42 35 31 53.03 66 43 56 35 61.54 91 44 36 30 54.55 66 45 53 36 59.55 89 46 33 35 48.53 68 47 50 29 63.29 79 48 32 24 57.14 56 49 43 30 58.90 73 50 31 37 45.59 68 51 39 36 52.00 75 52 31 33 48.44 64 53 44 28 61.11 72 54 31 29 51.67 60 55 51 30 62.96 81 56 32 30 51.61 62 57 40 25 61.54 65 58 32 29 52.46 61 59 41 29 58.57 70 60 33 30 52.38 63 61 40 23 63.49 63 62 27 27 50.00 54 63 37 25 59.68 62 64 21 26 44.68 47 65 41 25 62.12 66 66 22 20 52.38 42 67 37 22 62.71 59 68 23 22 51.11 45 69 34 19 64.15 53 70 20 25 44.44 45 71 32 22 59.26 54 72 25 16 60.98 41 73 34 16 68.00 50 74 17 20 45.95 37 75 29 21 58.00 50 76 16 18 47.06 34 77 28 18 60.87 46 78 17 16 51.52 33 79 25 13 65.79 38 80 18 17 51.43 35 81 24 13 64.86 37 82 15 10 60.00 25 83 24 14 63.16 38 84 10 17 37.04 27 85 26 13 66.67 39 86 11 15 42.31 26 87 19 12 61.29 31 88 13 15 46.43 28 89 15 15 50.00 30 90 14 9 60.87 23 91 16 9 64.00 25 92 10 14 41.67 24 93 15 8 65.22 23 94 12 19 38.71 31 95 19 7 73.08 26 96 14 13 51.85 27 97 13 11 54.17 24 98 11 13 45.83 24 99 9 10 47.37 19 100 13 15 46.43 28 101 12 8 60.00 20 102 6 14 30.00 20 103 13 8 61.90 21 104 4 13 23.53 17 105 13 6 68.42 19 106 7 13 35.00 20 107 11 7 61.11 18 108 6 12 33.33 18 109 10 8 55.56 18 110 6 14 30.00 20 111 11 5 68.75 16 112 4 13 23.53 17 113 12 2 85.71 14 114 3 14 17.65 17 115 8 5 61.54 13 116 5 12 29.41 17 117 7 4 63.64 11 118 3 14 17.65 17 119 6 3 66.67 9 120 4 14 22.22 18 121 9 5 64.29 14 122 2 13 13.33 15 123 7 4 63.64 11 124 3 15 16.67 18 125 9 5 64.29 14 126 4 12 25.00 16 127 8 3 72.73 11 128 3 10 23.08 13 129 6 4 60.00 10 130 0 12 0.00 12 131 5 1 83.33 6