/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
8112
Pairs without alignments under any condition
24346
Pairs that did not map uniquely
7542
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
219722
Methylated C's in CpG context
3253
Methylated C's in CHG context
1297
Methylated C's in CHH context
64705
Methylated C's in Unknown context
752
Unmethylated C's in CpG context
23088
Unmethylated C's in CHG context
29805
Unmethylated C's in CHH context
97574
Unmethylated C's in Unknown context
1081
Percentage methylation (CpG context)
12.3%
Percentage methylation (CHG context)
4.2%
Percentage methylation (CHH context)
39.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4105
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4006
original bottom strand
Deduplication
Alignments analysed
8111
Unique alignments
7039
Duplicates removed
1072
Duplicated alignments were found at 845 different positions
