CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 226 93 70.85 319 2 234 92 71.78 326 3 189 94 66.78 283 4 202 98 67.33 300 5 182 101 64.31 283 6 191 99 65.86 290 7 170 75 69.39 245 8 190 111 63.12 301 9 204 95 68.23 299 10 201 98 67.22 299 11 206 87 70.31 293 12 216 86 71.52 302 13 213 101 67.83 314 14 229 89 72.01 318 15 202 82 71.13 284 16 207 104 66.56 311 17 243 90 72.97 333 18 189 90 67.74 279 19 210 95 68.85 305 20 180 112 61.64 292 21 200 76 72.46 276 22 195 85 69.64 280 23 187 87 68.25 274 24 184 84 68.66 268 25 207 91 69.46 298 26 210 87 70.71 297 27 206 77 72.79 283 28 204 95 68.23 299 29 196 78 71.53 274 30 188 69 73.15 257 31 199 86 69.82 285 32 190 84 69.34 274 33 185 89 67.52 274 34 174 77 69.32 251 35 176 86 67.18 262 36 184 71 72.16 255 37 184 78 70.23 262 38 191 81 70.22 272 39 176 79 69.02 255 40 208 72 74.29 280 41 178 75 70.36 253 42 153 50 75.37 203 43 135 65 67.50 200 44 173 88 66.28 261 45 160 62 72.07 222 46 191 70 73.18 261 47 178 65 73.25 243 48 160 71 69.26 231 49 149 73 67.12 222 50 124 79 61.08 203 51 133 60 68.91 193 52 149 67 68.98 216 53 161 63 71.88 224 54 119 51 70.00 170 55 127 47 72.99 174 56 123 62 66.49 185 57 136 50 73.12 186 58 140 52 72.92 192 59 125 51 71.02 176 60 103 40 72.03 143 61 121 61 66.48 182 62 115 47 70.99 162 63 109 43 71.71 152 64 95 54 63.76 149 65 105 40 72.41 145 66 85 54 61.15 139 67 94 42 69.12 136 68 96 43 69.06 139 69 89 52 63.12 141 70 107 37 74.31 144 71 113 34 76.87 147 72 81 51 61.36 132 73 92 32 74.19 124 74 77 53 59.23 130 75 82 43 65.60 125 76 75 37 66.96 112 77 85 31 73.28 116 78 60 36 62.50 96 79 64 46 58.18 110 80 57 40 58.76 97 81 58 36 61.70 94 82 72 39 64.86 111 83 65 25 72.22 90 84 54 23 70.13 77 85 65 41 61.32 106 86 42 39 51.85 81 87 48 34 58.54 82 88 62 28 68.89 90 89 51 30 62.96 81 90 44 26 62.86 70 91 44 25 63.77 69 92 44 26 62.86 70 93 57 30 65.52 87 94 41 14 74.55 55 95 40 21 65.57 61 96 33 23 58.93 56 97 26 20 56.52 46 98 38 33 53.52 71 99 30 11 73.17 41 100 46 20 69.70 66 101 37 22 62.71 59 102 43 16 72.88 59 103 41 19 68.33 60 104 33 24 57.89 57 105 29 14 67.44 43 106 32 12 72.73 44 107 33 13 71.74 46 108 22 17 56.41 39 109 29 19 60.42 48 110 23 19 54.76 42 111 32 11 74.42 43 112 27 16 62.79 43 113 23 15 60.53 38 114 26 14 65.00 40 115 19 10 65.52 29 116 25 17 59.52 42 117 31 11 73.81 42 118 13 13 50.00 26 119 16 9 64.00 25 120 19 11 63.33 30 121 19 12 61.29 31 122 13 10 56.52 23 123 19 8 70.37 27 124 13 8 61.90 21 125 11 6 64.71 17 126 11 12 47.83 23 127 18 11 62.07 29 128 17 8 68.00 25 129 13 9 59.09 22 130 10 10 50.00 20 131 8 5 61.54 13 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72 337 17.60 409 2 20 341 5.54 361 3 24 329 6.80 353 4 18 346 4.95 364 5 21 338 5.85 359 6 22 368 5.64 390 7 15 379 3.81 394 8 10 332 2.92 342 9 15 353 4.08 368 10 24 369 6.11 393 11 10 340 2.86 350 12 9 349 2.51 358 13 11 358 2.98 369 14 14 333 4.03 347 15 11 387 2.76 398 16 14 372 3.63 386 17 12 380 3.06 392 18 11 371 2.88 382 19 10 346 2.81 356 20 6 362 1.63 368 21 7 375 1.83 382 22 12 372 3.12 384 23 4 378 1.05 382 24 13 376 3.34 389 25 16 348 4.40 364 26 12 369 3.15 381 27 13 355 3.53 368 28 12 354 3.28 366 29 8 327 2.39 335 30 12 343 3.38 355 31 10 351 2.77 361 32 9 345 2.54 354 33 12 349 3.32 361 34 9 347 2.53 356 35 7 333 2.06 340 36 11 350 3.05 361 37 9 346 2.54 355 38 12 316 3.66 328 39 8 309 2.52 317 40 2 311 0.64 313 41 8 325 2.40 333 42 11 299 3.55 310 43 8 302 2.58 310 44 9 276 3.16 285 45 10 304 3.18 314 46 13 303 4.11 316 47 5 259 1.89 264 48 3 295 1.01 298 49 6 292 2.01 298 50 6 252 2.33 258 51 5 267 1.84 272 52 5 260 1.89 265 53 9 250 3.47 259 54 5 248 1.98 253 55 9 240 3.61 249 56 6 228 2.56 234 57 9 225 3.85 234 58 5 227 2.16 232 59 3 232 1.28 235 60 6 235 2.49 241 61 6 228 2.56 234 62 5 227 2.16 232 63 4 197 1.99 201 64 3 198 1.49 201 65 6 222 2.63 228 66 3 185 1.60 188 67 4 182 2.15 186 68 6 174 3.33 180 69 4 184 2.13 188 70 4 175 2.23 179 71 2 175 1.13 177 72 3 182 1.62 185 73 3 154 1.91 157 74 2 157 1.26 159 75 7 141 4.73 148 76 4 156 2.50 160 77 2 135 1.46 137 78 4 129 3.01 133 79 6 134 4.29 140 80 4 119 3.25 123 81 2 133 1.48 135 82 5 138 3.50 143 83 0 112 0.00 112 84 3 120 2.44 123 85 2 116 1.69 118 86 1 113 0.88 114 87 2 112 1.75 114 88 4 105 3.67 109 89 1 90 1.10 91 90 2 106 1.85 108 91 0 109 0.00 109 92 3 87 3.33 90 93 2 81 2.41 83 94 2 104 1.89 106 95 5 85 5.56 90 96 2 76 2.56 78 97 2 82 2.38 84 98 0 77 0.00 77 99 0 72 0.00 72 100 2 86 2.27 88 101 4 70 5.41 74 102 3 88 3.30 91 103 0 73 0.00 73 104 2 63 3.08 65 105 1 67 1.47 68 106 6 62 8.82 68 107 0 62 0.00 62 108 3 58 4.92 61 109 3 53 5.36 56 110 2 49 3.92 51 111 0 57 0.00 57 112 1 57 1.72 58 113 2 54 3.57 56 114 0 45 0.00 45 115 0 52 0.00 52 116 1 57 1.72 58 117 1 42 2.33 43 118 0 41 0.00 41 119 0 56 0.00 56 120 1 40 2.44 41 121 0 33 0.00 33 122 2 39 4.88 41 123 1 39 2.50 40 124 2 23 8.00 25 125 0 36 0.00 36 126 1 35 2.78 36 127 3 41 6.82 44 128 0 34 0.00 34 129 2 43 4.44 45 130 1 34 2.86 35 131 1 15 6.25 16 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 280 899 23.75 1179 2 252 990 20.29 1242 3 247 894 21.65 1141 4 253 924 21.50 1177 5 255 971 20.80 1226 6 237 972 19.60 1209 7 240 911 20.85 1151 8 226 953 19.17 1179 9 247 955 20.55 1202 10 249 941 20.92 1190 11 254 998 20.29 1252 12 255 947 21.21 1202 13 258 998 20.54 1256 14 257 971 20.93 1228 15 245 1005 19.60 1250 16 250 956 20.73 1206 17 245 1063 18.73 1308 18 240 1062 18.43 1302 19 255 979 20.66 1234 20 255 1076 19.16 1331 21 275 1107 19.90 1382 22 214 990 17.77 1204 23 240 1030 18.90 1270 24 259 1079 19.36 1338 25 260 987 20.85 1247 26 229 1051 17.89 1280 27 253 1057 19.31 1310 28 255 1006 20.22 1261 29 241 1098 18.00 1339 30 228 1013 18.37 1241 31 220 1007 17.93 1227 32 225 981 18.66 1206 33 233 972 19.34 1205 34 232 936 19.86 1168 35 192 957 16.71 1149 36 212 981 17.77 1193 37 183 925 16.52 1108 38 194 860 18.41 1054 39 212 931 18.55 1143 40 194 944 17.05 1138 41 189 923 17.00 1112 42 197 883 18.24 1080 43 185 871 17.52 1056 44 189 847 18.24 1036 45 165 824 16.68 989 46 176 807 17.90 983 47 153 776 16.47 929 48 172 768 18.30 940 49 155 745 17.22 900 50 149 754 16.50 903 51 160 737 17.84 897 52 142 746 15.99 888 53 148 752 16.44 900 54 161 731 18.05 892 55 149 728 16.99 877 56 135 661 16.96 796 57 129 703 15.50 832 58 144 673 17.63 817 59 117 684 14.61 801 60 143 655 17.92 798 61 119 660 15.28 779 62 144 637 18.44 781 63 118 665 15.07 783 64 110 569 16.20 679 65 105 566 15.65 671 66 113 546 17.15 659 67 106 551 16.13 657 68 116 561 17.13 677 69 98 502 16.33 600 70 108 539 16.69 647 71 83 486 14.59 569 72 99 519 16.02 618 73 88 490 15.22 578 74 104 451 18.74 555 75 79 456 14.77 535 76 82 440 15.71 522 77 67 430 13.48 497 78 78 418 15.73 496 79 78 424 15.54 502 80 74 400 15.61 474 81 64 380 14.41 444 82 65 384 14.48 449 83 56 381 12.81 437 84 73 375 16.29 448 85 73 362 16.78 435 86 63 345 15.44 408 87 55 323 14.55 378 88 56 307 15.43 363 89 56 321 14.85 377 90 55 284 16.22 339 91 54 307 14.96 361 92 59 308 16.08 367 93 54 299 15.30 353 94 47 289 13.99 336 95 41 258 13.71 299 96 48 295 13.99 343 97 46 256 15.23 302 98 46 260 15.03 306 99 45 268 14.38 313 100 31 235 11.65 266 101 33 237 12.22 270 102 38 223 14.56 261 103 46 244 15.86 290 104 34 216 13.60 250 105 42 234 15.22 276 106 34 209 13.99 243 107 36 195 15.58 231 108 30 207 12.66 237 109 28 188 12.96 216 110 29 193 13.06 222 111 28 215 11.52 243 112 25 185 11.90 210 113 26 179 12.68 205 114 30 173 14.78 203 115 23 166 12.17 189 116 23 159 12.64 182 117 20 142 12.35 162 118 31 167 15.66 198 119 18 125 12.59 143 120 26 128 16.88 154 121 22 125 14.97 147 122 20 120 14.29 140 123 20 109 15.50 129 124 24 133 15.29 157 125 18 113 13.74 131 126 24 128 15.79 152 127 19 116 14.07 135 128 21 110 16.03 131 129 19 104 15.45 123 130 11 99 10.00 110 131 10 65 13.33 75 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10 12 45.45 22 2 22 13 62.86 35 3 45 18 71.43 63 4 12 13 48.00 25 5 13 7 65.00 20 6 9 11 45.00 20 7 13 12 52.00 25 8 18 7 72.00 25 9 16 8 66.67 24 10 18 13 58.06 31 11 18 10 64.29 28 12 8 8 50.00 16 13 9 6 60.00 15 14 15 5 75.00 20 15 13 7 65.00 20 16 8 8 50.00 16 17 11 7 61.11 18 18 5 3 62.50 8 19 6 4 60.00 10 20 8 7 53.33 15 21 8 2 80.00 10 22 2 4 33.33 6 23 8 7 53.33 15 24 8 3 72.73 11 25 10 5 66.67 15 26 6 6 50.00 12 27 6 5 54.55 11 28 9 7 56.25 16 29 4 2 66.67 6 30 3 5 37.50 8 31 3 2 60.00 5 32 7 7 50.00 14 33 9 5 64.29 14 34 1 3 25.00 4 35 9 11 45.00 20 36 6 2 75.00 8 37 3 3 50.00 6 38 2 1 66.67 3 39 2 1 66.67 3 40 4 2 66.67 6 41 0 2 0.00 2 42 3 5 37.50 8 43 4 4 50.00 8 44 5 0 100.00 5 45 3 2 60.00 5 46 5 2 71.43 7 47 5 1 83.33 6 48 2 1 66.67 3 49 3 5 37.50 8 50 1 2 33.33 3 51 1 7 12.50 8 52 1 2 33.33 3 53 1 2 33.33 3 54 4 1 80.00 5 55 2 2 50.00 4 56 1 0 100.00 1 57 1 1 50.00 2 58 1 0 100.00 1 59 1 4 20.00 5 60 3 2 60.00 5 61 4 1 80.00 5 62 2 1 66.67 3 63 0 0 0 64 2 2 50.00 4 65 0 0 0 66 0 3 0.00 3 67 2 0 100.00 2 68 3 1 75.00 4 69 2 1 66.67 3 70 0 0 0 71 0 2 0.00 2 72 0 1 0.00 1 73 3 0 100.00 3 74 1 0 100.00 1 75 1 0 100.00 1 76 3 0 100.00 3 77 2 1 66.67 3 78 1 0 100.00 1 79 2 0 100.00 2 80 0 0 0 81 0 0 0 82 0 1 0.00 1 83 1 0 100.00 1 84 2 0 100.00 2 85 2 1 66.67 3 86 1 0 100.00 1 87 0 0 0 88 0 3 0.00 3 89 0 1 0.00 1 90 1 0 100.00 1 91 0 1 0.00 1 92 2 1 66.67 3 93 0 0 0 94 2 1 66.67 3 95 1 0 100.00 1 96 1 3 25.00 4 97 0 1 0.00 1 98 0 0 0 99 1 0 100.00 1 100 0 2 0.00 2 101 0 2 0.00 2 102 1 1 50.00 2 103 0 0 0 104 0 1 0.00 1 105 1 0 100.00 1 106 1 0 100.00 1 107 0 0 0 108 1 1 50.00 2 109 0 1 0.00 1 110 0 0 0 111 0 1 0.00 1 112 0 0 0 113 0 0 0 114 1 0 100.00 1 115 0 1 0.00 1 116 0 0 0 117 0 0 0 118 1 0 100.00 1 119 0 0 0 120 1 0 100.00 1 121 1 0 100.00 1 122 1 0 100.00 1 123 0 0 0 124 0 0 0 125 1 0 100.00 1 126 0 0 0 127 0 0 0 128 0 0 0 129 0 0 0 130 0 0 0 131 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 30 11.76 34 2 1 26 3.70 27 3 17 53 24.29 70 4 3 81 3.57 84 5 1 26 3.70 27 6 3 36 7.69 39 7 1 25 3.85 26 8 3 60 4.76 63 9 1 18 5.26 19 10 4 33 10.81 37 11 1 44 2.22 45 12 1 52 1.89 53 13 1 47 2.08 48 14 0 36 0.00 36 15 0 35 0.00 35 16 0 25 0.00 25 17 0 33 0.00 33 18 0 18 0.00 18 19 0 14 0.00 14 20 0 21 0.00 21 21 0 21 0.00 21 22 0 12 0.00 12 23 1 23 4.17 24 24 0 12 0.00 12 25 1 8 11.11 9 26 0 16 0.00 16 27 0 15 0.00 15 28 0 11 0.00 11 29 0 18 0.00 18 30 1 13 7.14 14 31 0 7 0.00 7 32 2 10 16.67 12 33 0 10 0.00 10 34 0 9 0.00 9 35 0 6 0.00 6 36 0 10 0.00 10 37 0 8 0.00 8 38 0 3 0.00 3 39 1 7 12.50 8 40 0 5 0.00 5 41 0 9 0.00 9 42 0 7 0.00 7 43 1 5 16.67 6 44 1 7 12.50 8 45 1 6 14.29 7 46 0 3 0.00 3 47 0 9 0.00 9 48 0 9 0.00 9 49 0 4 0.00 4 50 0 6 0.00 6 51 0 6 0.00 6 52 0 4 0.00 4 53 0 6 0.00 6 54 0 5 0.00 5 55 0 6 0.00 6 56 1 7 12.50 8 57 0 2 0.00 2 58 0 3 0.00 3 59 1 1 50.00 2 60 0 5 0.00 5 61 0 4 0.00 4 62 0 5 0.00 5 63 0 3 0.00 3 64 0 3 0.00 3 65 0 6 0.00 6 66 0 4 0.00 4 67 0 1 0.00 1 68 0 7 0.00 7 69 0 2 0.00 2 70 0 1 0.00 1 71 0 3 0.00 3 72 0 0 0 73 0 0 0 74 0 6 0.00 6 75 0 3 0.00 3 76 0 3 0.00 3 77 0 0 0 78 0 4 0.00 4 79 0 3 0.00 3 80 0 3 0.00 3 81 2 0 100.00 2 82 0 0 0 83 0 6 0.00 6 84 0 1 0.00 1 85 1 2 33.33 3 86 0 2 0.00 2 87 0 0 0 88 0 2 0.00 2 89 0 2 0.00 2 90 0 2 0.00 2 91 0 1 0.00 1 92 0 3 0.00 3 93 0 0 0 94 0 3 0.00 3 95 0 3 0.00 3 96 1 2 33.33 3 97 0 2 0.00 2 98 0 0 0 99 0 3 0.00 3 100 0 2 0.00 2 101 0 2 0.00 2 102 0 0 0 103 0 1 0.00 1 104 0 2 0.00 2 105 0 0 0 106 0 1 0.00 1 107 0 0 0 108 0 2 0.00 2 109 0 2 0.00 2 110 0 0 0 111 0 1 0.00 1 112 0 1 0.00 1 113 0 1 0.00 1 114 0 0 0 115 1 1 50.00 2 116 0 0 0 117 0 1 0.00 1 118 0 2 0.00 2 119 0 1 0.00 1 120 0 0 0 121 0 0 0 122 0 1 0.00 1 123 0 1 0.00 1 124 0 0 0 125 0 0 0 126 0 1 0.00 1 127 0 2 0.00 2 128 0 1 0.00 1 129 0 0 0 130 0 1 0.00 1 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 46 99 31.72 145 2 18 89 16.82 107 3 51 106 32.48 157 4 16 112 12.50 128 5 32 92 25.81 124 6 17 96 15.04 113 7 33 87 27.50 120 8 24 82 22.64 106 9 35 99 26.12 134 10 21 89 19.09 110 11 38 90 29.69 128 12 29 74 28.16 103 13 31 108 22.30 139 14 22 111 16.54 133 15 31 127 19.62 158 16 18 108 14.29 126 17 32 95 25.20 127 18 20 63 24.10 83 19 24 66 26.67 90 20 18 62 22.50 80 21 21 64 24.71 85 22 24 74 24.49 98 23 25 58 30.12 83 24 17 57 22.97 74 25 14 53 20.90 67 26 23 43 34.85 66 27 23 53 30.26 76 28 17 61 21.79 78 29 17 51 25.00 68 30 17 55 23.61 72 31 19 42 31.15 61 32 16 47 25.40 63 33 18 52 25.71 70 34 13 56 18.84 69 35 19 44 30.16 63 36 14 48 22.58 62 37 19 45 29.69 64 38 10 54 15.62 64 39 14 33 29.79 47 40 11 47 18.97 58 41 16 29 35.56 45 42 12 42 22.22 54 43 15 43 25.86 58 44 13 49 20.97 62 45 11 36 23.40 47 46 12 32 27.27 44 47 17 34 33.33 51 48 7 46 13.21 53 49 11 24 31.43 35 50 13 40 24.53 53 51 16 31 34.04 47 52 12 34 26.09 46 53 12 28 30.00 40 54 9 39 18.75 48 55 11 21 34.38 32 56 12 38 24.00 50 57 11 32 25.58 43 58 10 35 22.22 45 59 13 25 34.21 38 60 5 34 12.82 39 61 11 17 39.29 28 62 6 30 16.67 36 63 11 14 44.00 25 64 7 23 23.33 30 65 13 16 44.83 29 66 9 29 23.68 38 67 10 21 32.26 31 68 6 25 19.35 31 69 7 21 25.00 28 70 6 26 18.75 32 71 10 18 35.71 28 72 7 24 22.58 31 73 7 16 30.43 23 74 5 24 17.24 29 75 6 21 22.22 27 76 6 20 23.08 26 77 4 15 21.05 19 78 3 25 10.71 28 79 5 15 25.00 20 80 5 21 19.23 26 81 5 15 25.00 20 82 3 23 11.54 26 83 4 16 20.00 20 84 5 24 17.24 29 85 3 12 20.00 15 86 6 17 26.09 23 87 3 20 13.04 23 88 6 19 24.00 25 89 6 13 31.58 19 90 3 17 15.00 20 91 7 11 38.89 18 92 5 16 23.81 21 93 4 15 21.05 19 94 5 20 20.00 25 95 3 7 30.00 10 96 5 18 21.74 23 97 5 10 33.33 15 98 2 12 14.29 14 99 2 8 20.00 10 100 5 14 26.32 19 101 5 8 38.46 13 102 3 13 18.75 16 103 3 9 25.00 12 104 2 14 12.50 16 105 3 9 25.00 12 106 3 14 17.65 17 107 4 9 30.77 13 108 4 16 20.00 20 109 4 10 28.57 14 110 2 14 12.50 16 111 4 11 26.67 15 112 1 13 7.14 14 113 4 9 30.77 13 114 2 15 11.76 17 115 4 8 33.33 12 116 4 14 22.22 18 117 3 10 23.08 13 118 2 12 14.29 14 119 3 12 20.00 15 120 3 12 20.00 15 121 4 13 23.53 17 122 0 7 0.00 7 123 1 14 6.67 15 124 1 14 6.67 15 125 3 8 27.27 11 126 0 12 0.00 12 127 4 10 28.57 14 128 1 11 8.33 12 129 2 12 14.29 14 130 1 11 8.33 12 131 2 0 100.00 2