/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11180
Pairs without alignments under any condition
23867
Pairs that did not map uniquely
4953
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
343557
Methylated C's in CpG context
34977
Methylated C's in CHG context
2045
Methylated C's in CHH context
36717
Methylated C's in Unknown context
606
Unmethylated C's in CpG context
16226
Unmethylated C's in CHG context
65423
Unmethylated C's in CHH context
188169
Unmethylated C's in Unknown context
1310
Percentage methylation (CpG context)
68.3%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
16.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5592
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5588
original bottom strand
Deduplication
Alignments analysed
11180
Unique alignments
9256
Duplicates removed
1924
Duplicated alignments were found at 1513 different positions
