CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 206 78 72.54 284 2 237 138 63.20 375 3 214 108 66.46 322 4 233 122 65.63 355 5 226 105 68.28 331 6 208 127 62.09 335 7 226 106 68.07 332 8 206 107 65.81 313 9 212 107 66.46 319 10 214 108 66.46 322 11 245 103 70.40 348 12 248 102 70.86 350 13 216 122 63.91 338 14 231 116 66.57 347 15 219 110 66.57 329 16 242 99 70.97 341 17 221 99 69.06 320 18 220 104 67.90 324 19 236 113 67.62 349 20 237 85 73.60 322 21 241 111 68.47 352 22 226 114 66.47 340 23 225 116 65.98 341 24 236 102 69.82 338 25 211 104 66.98 315 26 239 87 73.31 326 27 204 88 69.86 292 28 220 117 65.28 337 29 195 82 70.40 277 30 210 119 63.83 329 31 236 112 67.82 348 32 200 97 67.34 297 33 229 89 72.01 318 34 211 93 69.41 304 35 204 84 70.83 288 36 182 102 64.08 284 37 218 98 68.99 316 38 213 96 68.93 309 39 209 92 69.44 301 40 190 105 64.41 295 41 200 84 70.42 284 42 176 97 64.47 273 43 214 91 70.16 305 44 199 82 70.82 281 45 199 98 67.00 297 46 188 100 65.28 288 47 181 87 67.54 268 48 174 86 66.92 260 49 159 83 65.70 242 50 197 71 73.51 268 51 169 71 70.42 240 52 170 79 68.27 249 53 171 73 70.08 244 54 170 77 68.83 247 55 161 83 65.98 244 56 184 71 72.16 255 57 151 83 64.53 234 58 160 67 70.48 227 59 162 68 70.43 230 60 146 74 66.36 220 61 136 67 67.00 203 62 147 84 63.64 231 63 146 64 69.52 210 64 141 75 65.28 216 65 108 75 59.02 183 66 117 72 61.90 189 67 139 64 68.47 203 68 109 51 68.12 160 69 125 63 66.49 188 70 131 67 66.16 198 71 103 60 63.19 163 72 122 57 68.16 179 73 110 38 74.32 148 74 114 53 68.26 167 75 123 47 72.35 170 76 114 45 71.70 159 77 112 45 71.34 157 78 89 40 68.99 129 79 106 38 73.61 144 80 111 57 66.07 168 81 95 43 68.84 138 82 97 40 70.80 137 83 103 48 68.21 151 84 82 43 65.60 125 85 86 41 67.72 127 86 82 48 63.08 130 87 72 46 61.02 118 88 65 48 57.52 113 89 78 34 69.64 112 90 68 47 59.13 115 91 67 49 57.76 116 92 71 35 66.98 106 93 85 30 73.91 115 94 69 40 63.30 109 95 56 26 68.29 82 96 74 38 66.07 112 97 55 39 58.51 94 98 56 36 60.87 92 99 56 38 59.57 94 100 71 32 68.93 103 101 65 28 69.89 93 102 49 28 63.64 77 103 65 24 73.03 89 104 62 25 71.26 87 105 50 32 60.98 82 106 57 22 72.15 79 107 49 17 74.24 66 108 57 30 65.52 87 109 56 24 70.00 80 110 53 31 63.10 84 111 42 13 76.36 55 112 48 20 70.59 68 113 46 16 74.19 62 114 36 21 63.16 57 115 48 29 62.34 77 116 26 23 53.06 49 117 49 10 83.05 59 118 45 25 64.29 70 119 34 18 65.38 52 120 44 20 68.75 64 121 36 28 56.25 64 122 34 19 64.15 53 123 32 16 66.67 48 124 34 18 65.38 52 125 26 14 65.00 40 126 35 16 68.63 51 127 22 31 41.51 53 128 27 14 65.85 41 129 28 14 66.67 42 130 23 13 63.89 36 131 16 13 55.17 29 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 32 380 7.77 412 2 31 347 8.20 378 3 19 408 4.45 427 4 14 389 3.47 403 5 24 404 5.61 428 6 17 396 4.12 413 7 11 419 2.56 430 8 12 359 3.23 371 9 10 404 2.42 414 10 13 423 2.98 436 11 14 402 3.37 416 12 7 399 1.72 406 13 13 440 2.87 453 14 9 430 2.05 439 15 13 408 3.09 421 16 9 391 2.25 400 17 9 430 2.05 439 18 8 428 1.83 436 19 10 428 2.28 438 20 8 385 2.04 393 21 12 395 2.95 407 22 5 445 1.11 450 23 6 420 1.41 426 24 15 377 3.83 392 25 9 469 1.88 478 26 11 407 2.63 418 27 12 435 2.68 447 28 13 369 3.40 382 29 9 396 2.22 405 30 15 411 3.52 426 31 10 372 2.62 382 32 4 383 1.03 387 33 9 426 2.07 435 34 8 390 2.01 398 35 13 366 3.43 379 36 10 385 2.53 395 37 10 395 2.47 405 38 8 377 2.08 385 39 7 375 1.83 382 40 5 371 1.33 376 41 8 364 2.15 372 42 5 377 1.31 382 43 8 363 2.16 371 44 15 359 4.01 374 45 8 360 2.17 368 46 7 341 2.01 348 47 13 343 3.65 356 48 6 324 1.82 330 49 6 333 1.77 339 50 8 343 2.28 351 51 6 308 1.91 314 52 9 295 2.96 304 53 9 324 2.70 333 54 3 331 0.90 334 55 6 289 2.03 295 56 6 283 2.08 289 57 11 292 3.63 303 58 6 279 2.11 285 59 3 291 1.02 294 60 6 269 2.18 275 61 6 291 2.02 297 62 6 300 1.96 306 63 5 269 1.82 274 64 6 217 2.69 223 65 5 237 2.07 242 66 3 245 1.21 248 67 3 230 1.29 233 68 4 249 1.58 253 69 7 254 2.68 261 70 3 241 1.23 244 71 5 223 2.19 228 72 3 233 1.27 236 73 6 231 2.53 237 74 6 217 2.69 223 75 8 218 3.54 226 76 5 205 2.38 210 77 0 181 0.00 181 78 3 230 1.29 233 79 5 207 2.36 212 80 6 178 3.26 184 81 5 172 2.82 177 82 2 187 1.06 189 83 2 186 1.06 188 84 4 169 2.31 173 85 3 168 1.75 171 86 5 151 3.21 156 87 4 156 2.50 160 88 4 155 2.52 159 89 2 156 1.27 158 90 0 137 0.00 137 91 4 141 2.76 145 92 3 146 2.01 149 93 4 144 2.70 148 94 2 131 1.50 133 95 4 137 2.84 141 96 0 110 0.00 110 97 1 129 0.77 130 98 3 135 2.17 138 99 5 123 3.91 128 100 2 109 1.80 111 101 3 103 2.83 106 102 1 124 0.80 125 103 1 108 0.92 109 104 2 110 1.79 112 105 2 103 1.90 105 106 1 115 0.86 116 107 4 96 4.00 100 108 1 107 0.93 108 109 0 106 0.00 106 110 0 81 0.00 81 111 0 99 0.00 99 112 5 108 4.42 113 113 0 88 0.00 88 114 5 104 4.59 109 115 0 63 0.00 63 116 1 71 1.39 72 117 0 89 0.00 89 118 0 80 0.00 80 119 0 80 0.00 80 120 0 71 0.00 71 121 0 70 0.00 70 122 0 74 0.00 74 123 0 72 0.00 72 124 3 61 4.69 64 125 2 76 2.56 78 126 0 64 0.00 64 127 1 48 2.04 49 128 1 66 1.49 67 129 2 53 3.64 55 130 2 45 4.26 47 131 0 37 0.00 37 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 246 1062 18.81 1308 2 232 1093 17.51 1325 3 250 1073 18.90 1323 4 231 1078 17.65 1309 5 221 1157 16.04 1378 6 222 1118 16.57 1340 7 217 1060 16.99 1277 8 215 1126 16.03 1341 9 225 1122 16.70 1347 10 222 1083 17.01 1305 11 213 1112 16.08 1325 12 195 1118 14.85 1313 13 230 1037 18.15 1267 14 235 1119 17.36 1354 15 224 1136 16.47 1360 16 225 1183 15.98 1408 17 200 1133 15.00 1333 18 213 1148 15.65 1361 19 234 1168 16.69 1402 20 198 1124 14.98 1322 21 211 1171 15.27 1382 22 213 1117 16.02 1330 23 236 1140 17.15 1376 24 217 1220 15.10 1437 25 245 1106 18.13 1351 26 191 1176 13.97 1367 27 232 1194 16.27 1426 28 193 1147 14.40 1340 29 223 1060 17.38 1283 30 191 1200 13.73 1391 31 213 1127 15.90 1340 32 183 1125 13.99 1308 33 191 1145 14.30 1336 34 209 1088 16.11 1297 35 194 1113 14.84 1307 36 183 1061 14.71 1244 37 171 1077 13.70 1248 38 148 1025 12.62 1173 39 193 994 16.26 1187 40 162 1079 13.05 1241 41 164 1080 13.18 1244 42 171 1041 14.11 1212 43 154 963 13.79 1117 44 124 977 11.26 1101 45 157 990 13.69 1147 46 136 1006 11.91 1142 47 159 974 14.03 1133 48 123 1009 10.87 1132 49 150 967 13.43 1117 50 131 942 12.21 1073 51 164 976 14.39 1140 52 118 924 11.32 1042 53 118 860 12.07 978 54 124 923 11.84 1047 55 124 859 12.61 983 56 107 897 10.66 1004 57 127 905 12.31 1032 58 99 763 11.48 862 59 115 851 11.90 966 60 99 860 10.32 959 61 113 851 11.72 964 62 106 801 11.69 907 63 94 789 10.65 883 64 108 744 12.68 852 65 104 775 11.83 879 66 83 729 10.22 812 67 95 766 11.03 861 68 85 726 10.48 811 69 90 725 11.04 815 70 74 707 9.48 781 71 80 711 10.11 791 72 76 677 10.09 753 73 97 674 12.58 771 74 73 643 10.20 716 75 70 620 10.14 690 76 63 598 9.53 661 77 68 628 9.77 696 78 61 623 8.92 684 79 79 536 12.85 615 80 64 555 10.34 619 81 66 570 10.38 636 82 60 541 9.98 601 83 60 567 9.57 627 84 57 536 9.61 593 85 63 537 10.50 600 86 40 501 7.39 541 87 51 522 8.90 573 88 52 483 9.72 535 89 53 480 9.94 533 90 52 475 9.87 527 91 51 459 10.00 510 92 46 445 9.37 491 93 46 436 9.54 482 94 52 412 11.21 464 95 48 429 10.06 477 96 42 416 9.17 458 97 44 403 9.84 447 98 48 386 11.06 434 99 37 391 8.64 428 100 27 368 6.84 395 101 35 355 8.97 390 102 33 354 8.53 387 103 36 362 9.05 398 104 37 308 10.72 345 105 28 355 7.31 383 106 23 314 6.82 337 107 25 330 7.04 355 108 32 300 9.64 332 109 23 286 7.44 309 110 33 309 9.65 342 111 29 300 8.81 329 112 22 297 6.90 319 113 23 273 7.77 296 114 27 257 9.51 284 115 17 297 5.41 314 116 22 275 7.41 297 117 18 273 6.19 291 118 25 258 8.83 283 119 15 235 6.00 250 120 23 259 8.16 282 121 17 209 7.52 226 122 29 231 11.15 260 123 12 221 5.15 233 124 25 219 10.25 244 125 10 209 4.57 219 126 14 197 6.64 211 127 15 214 6.55 229 128 20 208 8.77 228 129 12 186 6.06 198 130 16 191 7.73 207 131 6 155 3.73 161 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22 21 51.16 43 2 16 21 43.24 37 3 40 11 78.43 51 4 18 24 42.86 42 5 22 14 61.11 36 6 25 11 69.44 36 7 21 13 61.76 34 8 19 12 61.29 31 9 22 20 52.38 42 10 17 14 54.84 31 11 22 13 62.86 35 12 23 17 57.50 40 13 19 10 65.52 29 14 29 15 65.91 44 15 19 10 65.52 29 16 29 11 72.50 40 17 19 8 70.37 27 18 15 10 60.00 25 19 14 11 56.00 25 20 22 6 78.57 28 21 12 12 50.00 24 22 16 8 66.67 24 23 16 11 59.26 27 24 11 7 61.11 18 25 11 10 52.38 21 26 11 3 78.57 14 27 8 6 57.14 14 28 16 9 64.00 25 29 17 7 70.83 24 30 12 8 60.00 20 31 11 7 61.11 18 32 15 5 75.00 20 33 17 2 89.47 19 34 12 5 70.59 17 35 7 11 38.89 18 36 12 6 66.67 18 37 15 4 78.95 19 38 6 5 54.55 11 39 8 10 44.44 18 40 10 6 62.50 16 41 11 8 57.89 19 42 6 7 46.15 13 43 12 4 75.00 16 44 6 5 54.55 11 45 8 9 47.06 17 46 3 4 42.86 7 47 8 7 53.33 15 48 7 4 63.64 11 49 11 3 78.57 14 50 5 5 50.00 10 51 6 3 66.67 9 52 9 3 75.00 12 53 6 5 54.55 11 54 7 4 63.64 11 55 6 6 50.00 12 56 13 1 92.86 14 57 6 1 85.71 7 58 7 5 58.33 12 59 7 2 77.78 9 60 7 2 77.78 9 61 11 4 73.33 15 62 4 1 80.00 5 63 2 2 50.00 4 64 5 2 71.43 7 65 6 3 66.67 9 66 2 3 40.00 5 67 0 2 0.00 2 68 4 1 80.00 5 69 2 2 50.00 4 70 4 2 66.67 6 71 4 5 44.44 9 72 4 1 80.00 5 73 4 1 80.00 5 74 2 3 40.00 5 75 3 2 60.00 5 76 2 1 66.67 3 77 2 5 28.57 7 78 2 1 66.67 3 79 6 1 85.71 7 80 3 3 50.00 6 81 2 0 100.00 2 82 2 2 50.00 4 83 3 3 50.00 6 84 2 0 100.00 2 85 3 2 60.00 5 86 1 1 50.00 2 87 6 2 75.00 8 88 0 0 0 89 5 2 71.43 7 90 2 2 50.00 4 91 0 0 0 92 2 2 50.00 4 93 2 0 100.00 2 94 1 0 100.00 1 95 1 0 100.00 1 96 4 1 80.00 5 97 0 0 0 98 0 3 0.00 3 99 0 4 0.00 4 100 2 0 100.00 2 101 0 3 0.00 3 102 1 0 100.00 1 103 0 6 0.00 6 104 1 1 50.00 2 105 0 2 0.00 2 106 0 0 0 107 2 0 100.00 2 108 2 0 100.00 2 109 2 0 100.00 2 110 4 0 100.00 4 111 1 0 100.00 1 112 2 1 66.67 3 113 1 0 100.00 1 114 0 1 0.00 1 115 1 1 50.00 2 116 2 0 100.00 2 117 1 0 100.00 1 118 2 0 100.00 2 119 1 2 33.33 3 120 0 0 0 121 0 1 0.00 1 122 3 1 75.00 4 123 2 1 66.67 3 124 0 0 0 125 0 0 0 126 0 0 0 127 1 0 100.00 1 128 0 1 0.00 1 129 0 0 0 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 58 4.92 61 2 5 59 7.81 64 3 5 50 9.09 55 4 0 72 0.00 72 5 0 43 0.00 43 6 0 56 0.00 56 7 2 50 3.85 52 8 2 43 4.44 45 9 3 51 5.56 54 10 1 51 1.92 52 11 1 48 2.04 49 12 2 63 3.08 65 13 0 41 0.00 41 14 0 31 0.00 31 15 0 48 0.00 48 16 0 29 0.00 29 17 0 44 0.00 44 18 0 34 0.00 34 19 0 33 0.00 33 20 1 29 3.33 30 21 0 29 0.00 29 22 0 36 0.00 36 23 0 27 0.00 27 24 0 35 0.00 35 25 0 28 0.00 28 26 0 27 0.00 27 27 0 25 0.00 25 28 0 26 0.00 26 29 2 35 5.41 37 30 0 22 0.00 22 31 1 21 4.55 22 32 0 20 0.00 20 33 0 24 0.00 24 34 1 26 3.70 27 35 2 13 13.33 15 36 1 21 4.55 22 37 0 14 0.00 14 38 1 20 4.76 21 39 0 18 0.00 18 40 1 14 6.67 15 41 1 26 3.70 27 42 1 21 4.55 22 43 0 15 0.00 15 44 0 21 0.00 21 45 0 20 0.00 20 46 0 15 0.00 15 47 0 18 0.00 18 48 0 20 0.00 20 49 0 12 0.00 12 50 0 13 0.00 13 51 0 14 0.00 14 52 1 15 6.25 16 53 0 15 0.00 15 54 0 10 0.00 10 55 0 16 0.00 16 56 0 12 0.00 12 57 0 11 0.00 11 58 0 10 0.00 10 59 0 12 0.00 12 60 0 10 0.00 10 61 0 10 0.00 10 62 0 12 0.00 12 63 0 12 0.00 12 64 0 16 0.00 16 65 0 6 0.00 6 66 0 11 0.00 11 67 0 11 0.00 11 68 0 7 0.00 7 69 1 7 12.50 8 70 0 7 0.00 7 71 0 12 0.00 12 72 0 6 0.00 6 73 0 6 0.00 6 74 0 6 0.00 6 75 0 14 0.00 14 76 0 10 0.00 10 77 0 4 0.00 4 78 0 8 0.00 8 79 0 4 0.00 4 80 0 3 0.00 3 81 0 8 0.00 8 82 0 5 0.00 5 83 0 5 0.00 5 84 0 6 0.00 6 85 0 3 0.00 3 86 1 8 11.11 9 87 0 5 0.00 5 88 0 7 0.00 7 89 0 3 0.00 3 90 0 8 0.00 8 91 0 5 0.00 5 92 0 3 0.00 3 93 0 7 0.00 7 94 0 2 0.00 2 95 0 2 0.00 2 96 0 0 0 97 0 5 0.00 5 98 0 5 0.00 5 99 0 5 0.00 5 100 0 2 0.00 2 101 0 8 0.00 8 102 0 5 0.00 5 103 0 2 0.00 2 104 0 8 0.00 8 105 0 2 0.00 2 106 0 3 0.00 3 107 0 1 0.00 1 108 0 5 0.00 5 109 0 2 0.00 2 110 0 7 0.00 7 111 0 3 0.00 3 112 0 4 0.00 4 113 0 2 0.00 2 114 0 2 0.00 2 115 0 3 0.00 3 116 0 2 0.00 2 117 0 1 0.00 1 118 0 2 0.00 2 119 1 5 16.67 6 120 0 1 0.00 1 121 0 0 0 122 0 5 0.00 5 123 0 3 0.00 3 124 0 2 0.00 2 125 0 1 0.00 1 126 0 2 0.00 2 127 0 2 0.00 2 128 0 0 0 129 0 3 0.00 3 130 0 3 0.00 3 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 44 186 19.13 230 2 16 198 7.48 214 3 42 189 18.18 231 4 10 183 5.18 193 5 39 156 20.00 195 6 13 137 8.67 150 7 32 162 16.49 194 8 8 155 4.91 163 9 36 152 19.15 188 10 19 168 10.16 187 11 35 132 20.96 167 12 14 132 9.59 146 13 32 169 15.92 201 14 16 142 10.13 158 15 35 135 20.59 170 16 19 143 11.73 162 17 29 136 17.58 165 18 11 136 7.48 147 19 32 136 19.05 168 20 14 117 10.69 131 21 31 114 21.38 145 22 13 115 10.16 128 23 23 91 20.18 114 24 10 113 8.13 123 25 23 106 17.83 129 26 10 113 8.13 123 27 24 104 18.75 128 28 12 106 10.17 118 29 24 101 19.20 125 30 12 100 10.71 112 31 22 111 16.54 133 32 7 107 6.14 114 33 19 88 17.76 107 34 11 88 11.11 99 35 21 93 18.42 114 36 13 96 11.93 109 37 18 95 15.93 113 38 10 89 10.10 99 39 19 88 17.76 107 40 15 92 14.02 107 41 19 91 17.27 110 42 8 76 9.52 84 43 16 74 17.78 90 44 11 81 11.96 92 45 20 87 18.69 107 46 10 90 10.00 100 47 17 66 20.48 83 48 11 71 13.41 82 49 18 65 21.69 83 50 12 64 15.79 76 51 18 76 19.15 94 52 5 67 6.94 72 53 14 59 19.18 73 54 6 70 7.89 76 55 19 56 25.33 75 56 12 73 14.12 85 57 11 58 15.94 69 58 11 66 14.29 77 59 17 55 23.61 72 60 8 68 10.53 76 61 15 48 23.81 63 62 5 49 9.26 54 63 9 63 12.50 72 64 6 57 9.52 63 65 15 49 23.44 64 66 7 49 12.50 56 67 9 65 12.16 74 68 7 55 11.29 62 69 12 40 23.08 52 70 6 53 10.17 59 71 10 47 17.54 57 72 10 57 14.93 67 73 5 39 11.36 44 74 7 50 12.28 57 75 7 38 15.56 45 76 9 53 14.52 62 77 6 36 14.29 42 78 8 44 15.38 52 79 9 44 16.98 53 80 9 48 15.79 57 81 11 33 25.00 44 82 6 49 10.91 55 83 3 38 7.32 41 84 5 44 10.20 49 85 6 37 13.95 43 86 6 40 13.04 46 87 6 35 14.63 41 88 6 35 14.63 41 89 4 36 10.00 40 90 4 38 9.52 42 91 11 30 26.83 41 92 4 30 11.76 34 93 5 27 15.62 32 94 8 40 16.67 48 95 7 29 19.44 36 96 9 29 23.68 38 97 4 30 11.76 34 98 6 33 15.38 39 99 6 27 18.18 33 100 5 32 13.51 37 101 6 17 26.09 23 102 4 24 14.29 28 103 4 25 13.79 29 104 5 30 14.29 35 105 5 23 17.86 28 106 6 29 17.14 35 107 2 27 6.90 29 108 4 25 13.79 29 109 4 23 14.81 27 110 6 17 26.09 23 111 4 20 16.67 24 112 2 28 6.67 30 113 3 23 11.54 26 114 6 24 20.00 30 115 2 25 7.41 27 116 3 22 12.00 25 117 4 17 19.05 21 118 5 24 17.24 29 119 2 22 8.33 24 120 5 25 16.67 30 121 1 22 4.35 23 122 1 18 5.26 19 123 3 17 15.00 20 124 3 20 13.04 23 125 4 24 14.29 28 126 2 14 12.50 16 127 0 18 0.00 18 128 2 17 10.53 19 129 1 22 4.35 23 130 1 18 5.26 19 131 1 3 25.00 4