/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11731
Pairs without alignments under any condition
23562
Pairs that did not map uniquely
4707
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
412236
Methylated C's in CpG context
42748
Methylated C's in CHG context
1941
Methylated C's in CHH context
33547
Methylated C's in Unknown context
488
Unmethylated C's in CpG context
20965
Unmethylated C's in CHG context
80484
Unmethylated C's in CHH context
232551
Unmethylated C's in Unknown context
1301
Percentage methylation (CpG context)
67.1%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
12.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5797
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5932
original bottom strand
Deduplication
Alignments analysed
11729
Unique alignments
9711
Duplicates removed
2018
Duplicated alignments were found at 1582 different positions
