CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 221 78 73.91 299 2 262 86 75.29 348 3 184 88 67.65 272 4 198 99 66.67 297 5 197 97 67.01 294 6 190 90 67.86 280 7 186 93 66.67 279 8 182 95 65.70 277 9 175 83 67.83 258 10 176 101 63.54 277 11 206 85 70.79 291 12 210 93 69.31 303 13 221 79 73.67 300 14 214 97 68.81 311 15 224 85 72.49 309 16 173 107 61.79 280 17 207 95 68.54 302 18 184 93 66.43 277 19 214 90 70.39 304 20 212 93 69.51 305 21 200 81 71.17 281 22 197 90 68.64 287 23 221 84 72.46 305 24 208 82 71.72 290 25 202 79 71.89 281 26 228 83 73.31 311 27 192 90 68.09 282 28 203 95 68.12 298 29 205 78 72.44 283 30 187 86 68.50 273 31 188 78 70.68 266 32 182 86 67.91 268 33 196 69 73.96 265 34 190 75 71.70 265 35 182 87 67.66 269 36 184 79 69.96 263 37 198 69 74.16 267 38 177 89 66.54 266 39 179 73 71.03 252 40 177 77 69.69 254 41 181 75 70.70 256 42 189 73 72.14 262 43 185 55 77.08 240 44 165 72 69.62 237 45 155 63 71.10 218 46 149 57 72.33 206 47 164 79 67.49 243 48 129 65 66.49 194 49 137 71 65.87 208 50 148 63 70.14 211 51 129 63 67.19 192 52 125 53 70.22 178 53 125 74 62.81 199 54 118 68 63.44 186 55 113 55 67.26 168 56 117 60 66.10 177 57 97 52 65.10 149 58 120 46 72.29 166 59 117 42 73.58 159 60 112 47 70.44 159 61 105 57 64.81 162 62 89 45 66.42 134 63 105 28 78.95 133 64 117 46 71.78 163 65 97 46 67.83 143 66 92 50 64.79 142 67 77 40 65.81 117 68 85 37 69.67 122 69 87 34 71.90 121 70 89 36 71.20 125 71 74 40 64.91 114 72 83 40 67.48 123 73 67 45 59.82 112 74 62 35 63.92 97 75 83 39 68.03 122 76 78 38 67.24 116 77 71 33 68.27 104 78 73 35 67.59 108 79 60 30 66.67 90 80 62 29 68.13 91 81 47 31 60.26 78 82 55 33 62.50 88 83 48 29 62.34 77 84 54 22 71.05 76 85 56 31 64.37 87 86 58 32 64.44 90 87 45 31 59.21 76 88 44 17 72.13 61 89 41 21 66.13 62 90 41 22 65.08 63 91 52 17 75.36 69 92 38 27 58.46 65 93 38 19 66.67 57 94 42 23 64.62 65 95 35 14 71.43 49 96 30 19 61.22 49 97 35 18 66.04 53 98 38 20 65.52 58 99 29 17 63.04 46 100 28 23 54.90 51 101 28 15 65.12 43 102 30 9 76.92 39 103 24 12 66.67 36 104 23 16 58.97 39 105 32 10 76.19 42 106 31 11 73.81 42 107 21 14 60.00 35 108 26 17 60.47 43 109 29 11 72.50 40 110 23 6 79.31 29 111 17 13 56.67 30 112 22 12 64.71 34 113 26 13 66.67 39 114 23 15 60.53 38 115 11 13 45.83 24 116 20 16 55.56 36 117 16 10 61.54 26 118 24 6 80.00 30 119 17 7 70.83 24 120 9 6 60.00 15 121 16 12 57.14 28 122 9 11 45.00 20 123 16 9 64.00 25 124 7 10 41.18 17 125 11 11 50.00 22 126 11 6 64.71 17 127 13 4 76.47 17 128 14 5 73.68 19 129 13 9 59.09 22 130 9 6 60.00 15 131 10 1 90.91 11 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 61 340 15.21 401 2 23 317 6.76 340 3 18 351 4.88 369 4 10 334 2.91 344 5 16 300 5.06 316 6 23 330 6.52 353 7 10 335 2.90 345 8 10 343 2.83 353 9 11 321 3.31 332 10 8 385 2.04 393 11 6 363 1.63 369 12 10 319 3.04 329 13 8 339 2.31 347 14 7 366 1.88 373 15 10 376 2.59 386 16 11 346 3.08 357 17 11 340 3.13 351 18 8 355 2.20 363 19 7 334 2.05 341 20 12 378 3.08 390 21 7 392 1.75 399 22 8 382 2.05 390 23 8 363 2.16 371 24 13 359 3.49 372 25 10 343 2.83 353 26 5 380 1.30 385 27 13 355 3.53 368 28 4 344 1.15 348 29 11 362 2.95 373 30 9 306 2.86 315 31 13 329 3.80 342 32 8 303 2.57 311 33 9 332 2.64 341 34 9 336 2.61 345 35 8 312 2.50 320 36 11 306 3.47 317 37 6 340 1.73 346 38 4 329 1.20 333 39 6 305 1.93 311 40 7 301 2.27 308 41 10 290 3.33 300 42 2 275 0.72 277 43 13 307 4.06 320 44 5 278 1.77 283 45 4 255 1.54 259 46 7 279 2.45 286 47 1 258 0.39 259 48 10 250 3.85 260 49 6 258 2.27 264 50 9 248 3.50 257 51 3 242 1.22 245 52 5 252 1.95 257 53 5 221 2.21 226 54 4 235 1.67 239 55 2 214 0.93 216 56 4 218 1.80 222 57 5 195 2.50 200 58 9 203 4.25 212 59 6 190 3.06 196 60 5 227 2.16 232 61 4 193 2.03 197 62 5 168 2.89 173 63 5 199 2.45 204 64 6 184 3.16 190 65 0 156 0.00 156 66 3 172 1.71 175 67 9 152 5.59 161 68 4 155 2.52 159 69 0 137 0.00 137 70 0 138 0.00 138 71 5 154 3.14 159 72 1 137 0.72 138 73 3 134 2.19 137 74 3 122 2.40 125 75 3 136 2.16 139 76 3 114 2.56 117 77 0 118 0.00 118 78 4 133 2.92 137 79 1 102 0.97 103 80 5 129 3.73 134 81 5 105 4.55 110 82 4 116 3.33 120 83 0 103 0.00 103 84 1 87 1.14 88 85 0 100 0.00 100 86 3 80 3.61 83 87 4 101 3.81 105 88 0 95 0.00 95 89 2 79 2.47 81 90 1 105 0.94 106 91 3 75 3.85 78 92 2 81 2.41 83 93 2 89 2.20 91 94 0 76 0.00 76 95 0 82 0.00 82 96 2 72 2.70 74 97 4 67 5.63 71 98 1 71 1.39 72 99 2 58 3.33 60 100 1 55 1.79 56 101 0 47 0.00 47 102 1 52 1.89 53 103 0 76 0.00 76 104 3 63 4.55 66 105 1 63 1.56 64 106 0 42 0.00 42 107 0 59 0.00 59 108 3 54 5.26 57 109 2 42 4.55 44 110 2 44 4.35 46 111 2 40 4.76 42 112 1 36 2.70 37 113 2 26 7.14 28 114 2 33 5.71 35 115 1 33 2.94 34 116 1 23 4.17 24 117 1 40 2.44 41 118 2 24 7.69 26 119 0 30 0.00 30 120 1 33 2.94 34 121 0 27 0.00 27 122 0 28 0.00 28 123 2 22 8.33 24 124 1 29 3.33 30 125 0 30 0.00 30 126 0 27 0.00 27 127 0 11 0.00 11 128 2 30 6.25 32 129 1 31 3.12 32 130 1 18 5.26 19 131 2 13 13.33 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 271 927 22.62 1198 2 226 940 19.38 1166 3 225 983 18.63 1208 4 198 987 16.71 1185 5 239 938 20.31 1177 6 208 986 17.42 1194 7 237 945 20.05 1182 8 200 961 17.23 1161 9 244 965 20.18 1209 10 196 977 16.71 1173 11 224 984 18.54 1208 12 238 1012 19.04 1250 13 224 986 18.51 1210 14 236 1053 18.31 1289 15 226 1000 18.43 1226 16 236 1016 18.85 1252 17 239 1060 18.40 1299 18 220 1064 17.13 1284 19 237 1063 18.23 1300 20 210 1108 15.93 1318 21 209 1117 15.76 1326 22 227 1057 17.68 1284 23 207 1066 16.26 1273 24 218 1067 16.96 1285 25 234 1072 17.92 1306 26 209 1086 16.14 1295 27 233 1070 17.88 1303 28 213 1069 16.61 1282 29 227 1054 17.72 1281 30 198 1038 16.02 1236 31 199 1028 16.22 1227 32 192 1019 15.85 1211 33 171 1012 14.45 1183 34 185 951 16.29 1136 35 158 995 13.70 1153 36 162 983 14.15 1145 37 171 908 15.85 1079 38 177 902 16.40 1079 39 160 915 14.88 1075 40 153 921 14.25 1074 41 154 915 14.41 1069 42 149 860 14.77 1009 43 145 867 14.33 1012 44 142 860 14.17 1002 45 137 852 13.85 989 46 141 837 14.42 978 47 129 804 13.83 933 48 133 775 14.65 908 49 139 775 15.21 914 50 122 725 14.40 847 51 116 714 13.98 830 52 135 715 15.88 850 53 120 654 15.50 774 54 127 713 15.12 840 55 106 679 13.50 785 56 121 707 14.61 828 57 98 658 12.96 756 58 110 619 15.09 729 59 104 605 14.67 709 60 99 610 13.96 709 61 92 612 13.07 704 62 95 595 13.77 690 63 103 575 15.19 678 64 107 529 16.82 636 65 87 513 14.50 600 66 84 513 14.07 597 67 84 511 14.12 595 68 89 503 15.03 592 69 92 484 15.97 576 70 74 487 13.19 561 71 84 467 15.25 551 72 64 452 12.40 516 73 78 407 16.08 485 74 73 441 14.20 514 75 74 397 15.71 471 76 62 385 13.87 447 77 67 401 14.32 468 78 64 371 14.71 435 79 73 349 17.30 422 80 57 359 13.70 416 81 53 380 12.24 433 82 56 336 14.29 392 83 62 311 16.62 373 84 62 334 15.66 396 85 51 299 14.57 350 86 50 328 13.23 378 87 56 309 15.34 365 88 46 306 13.07 352 89 59 293 16.76 352 90 46 276 14.29 322 91 43 263 14.05 306 92 52 262 16.56 314 93 48 247 16.27 295 94 43 245 14.93 288 95 43 237 15.36 280 96 39 227 14.66 266 97 35 220 13.73 255 98 44 249 15.02 293 99 43 199 17.77 242 100 35 220 13.73 255 101 35 216 13.94 251 102 27 202 11.79 229 103 37 188 16.44 225 104 26 202 11.40 228 105 30 170 15.00 200 106 22 178 11.00 200 107 33 162 16.92 195 108 29 160 15.34 189 109 28 172 14.00 200 110 29 170 14.57 199 111 27 159 14.52 186 112 24 153 13.56 177 113 24 140 14.63 164 114 21 159 11.67 180 115 25 161 13.44 186 116 20 145 12.12 165 117 21 135 13.46 156 118 23 142 13.94 165 119 22 127 14.77 149 120 15 114 11.63 129 121 21 105 16.67 126 122 21 100 17.36 121 123 17 121 12.32 138 124 21 110 16.03 131 125 17 104 14.05 121 126 12 100 10.71 112 127 22 96 18.64 118 128 17 106 13.82 123 129 16 90 15.09 106 130 13 78 14.29 91 131 14 57 19.72 71 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10 12 45.45 22 2 16 11 59.26 27 3 49 7 87.50 56 4 9 14 39.13 23 5 10 10 50.00 20 6 8 6 57.14 14 7 6 10 37.50 16 8 12 10 54.55 22 9 7 9 43.75 16 10 12 4 75.00 16 11 16 8 66.67 24 12 6 5 54.55 11 13 5 2 71.43 7 14 7 9 43.75 16 15 6 4 60.00 10 16 8 10 44.44 18 17 7 8 46.67 15 18 8 5 61.54 13 19 6 5 54.55 11 20 3 5 37.50 8 21 4 2 66.67 6 22 4 7 36.36 11 23 5 7 41.67 12 24 3 5 37.50 8 25 7 3 70.00 10 26 4 2 66.67 6 27 3 7 30.00 10 28 5 3 62.50 8 29 3 5 37.50 8 30 7 4 63.64 11 31 5 7 41.67 12 32 2 3 40.00 5 33 1 1 50.00 2 34 2 3 40.00 5 35 3 5 37.50 8 36 7 1 87.50 8 37 2 3 40.00 5 38 2 2 50.00 4 39 3 1 75.00 4 40 4 3 57.14 7 41 2 2 50.00 4 42 5 3 62.50 8 43 3 1 75.00 4 44 0 2 0.00 2 45 3 1 75.00 4 46 2 7 22.22 9 47 2 1 66.67 3 48 3 1 75.00 4 49 1 2 33.33 3 50 2 0 100.00 2 51 3 1 75.00 4 52 0 3 0.00 3 53 1 0 100.00 1 54 1 0 100.00 1 55 0 0 0 56 2 1 66.67 3 57 3 1 75.00 4 58 1 3 25.00 4 59 1 0 100.00 1 60 2 0 100.00 2 61 1 3 25.00 4 62 1 1 50.00 2 63 1 0 100.00 1 64 0 1 0.00 1 65 0 3 0.00 3 66 0 1 0.00 1 67 1 0 100.00 1 68 2 2 50.00 4 69 1 0 100.00 1 70 0 1 0.00 1 71 1 0 100.00 1 72 1 0 100.00 1 73 1 0 100.00 1 74 2 2 50.00 4 75 0 2 0.00 2 76 3 1 75.00 4 77 1 0 100.00 1 78 1 1 50.00 2 79 0 1 0.00 1 80 2 0 100.00 2 81 1 1 50.00 2 82 0 1 0.00 1 83 0 1 0.00 1 84 0 0 0 85 1 0 100.00 1 86 0 0 0 87 0 1 0.00 1 88 0 0 0 89 1 1 50.00 2 90 0 0 0 91 0 0 0 92 1 2 33.33 3 93 0 0 0 94 0 0 0 95 0 1 0.00 1 96 0 0 0 97 1 1 50.00 2 98 0 2 0.00 2 99 0 0 0 100 0 0 0 101 0 0 0 102 0 0 0 103 1 0 100.00 1 104 1 1 50.00 2 105 0 0 0 106 0 1 0.00 1 107 1 0 100.00 1 108 1 2 33.33 3 109 0 0 0 110 0 1 0.00 1 111 0 0 0 112 0 0 0 113 0 1 0.00 1 114 0 0 0 115 0 0 0 116 0 0 0 117 1 0 100.00 1 118 0 0 0 119 0 1 0.00 1 120 0 0 0 121 0 0 0 122 0 0 0 123 0 0 0 124 0 0 0 125 0 1 0.00 1 126 0 0 0 127 0 0 0 128 0 0 0 129 0 0 0 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 25 7.41 27 2 1 27 3.57 28 3 8 36 18.18 44 4 0 70 0.00 70 5 0 20 0.00 20 6 0 17 0.00 17 7 3 20 13.04 23 8 3 33 8.33 36 9 2 26 7.14 28 10 1 18 5.26 19 11 2 32 5.88 34 12 0 36 0.00 36 13 1 37 2.63 38 14 0 27 0.00 27 15 2 28 6.67 30 16 0 19 0.00 19 17 0 22 0.00 22 18 0 16 0.00 16 19 3 9 25.00 12 20 1 10 9.09 11 21 1 9 10.00 10 22 1 14 6.67 15 23 0 13 0.00 13 24 0 12 0.00 12 25 1 13 7.14 14 26 0 10 0.00 10 27 0 6 0.00 6 28 0 7 0.00 7 29 0 10 0.00 10 30 0 5 0.00 5 31 0 12 0.00 12 32 0 9 0.00 9 33 1 6 14.29 7 34 0 8 0.00 8 35 0 6 0.00 6 36 0 9 0.00 9 37 0 8 0.00 8 38 2 7 22.22 9 39 0 3 0.00 3 40 0 7 0.00 7 41 0 11 0.00 11 42 0 4 0.00 4 43 1 5 16.67 6 44 0 5 0.00 5 45 0 2 0.00 2 46 0 5 0.00 5 47 0 6 0.00 6 48 1 6 14.29 7 49 0 3 0.00 3 50 0 9 0.00 9 51 1 8 11.11 9 52 0 4 0.00 4 53 0 2 0.00 2 54 0 5 0.00 5 55 0 3 0.00 3 56 0 3 0.00 3 57 0 3 0.00 3 58 0 7 0.00 7 59 0 5 0.00 5 60 0 1 0.00 1 61 0 5 0.00 5 62 1 4 20.00 5 63 0 5 0.00 5 64 0 4 0.00 4 65 0 2 0.00 2 66 0 2 0.00 2 67 0 2 0.00 2 68 0 4 0.00 4 69 0 6 0.00 6 70 0 1 0.00 1 71 0 3 0.00 3 72 0 4 0.00 4 73 0 2 0.00 2 74 0 0 0 75 0 4 0.00 4 76 0 4 0.00 4 77 0 3 0.00 3 78 0 3 0.00 3 79 0 3 0.00 3 80 0 1 0.00 1 81 0 0 0 82 1 1 50.00 2 83 1 0 100.00 1 84 0 1 0.00 1 85 0 0 0 86 0 0 0 87 0 2 0.00 2 88 0 0 0 89 0 0 0 90 0 1 0.00 1 91 0 2 0.00 2 92 0 1 0.00 1 93 0 1 0.00 1 94 0 3 0.00 3 95 0 0 0 96 0 1 0.00 1 97 1 0 100.00 1 98 0 0 0 99 0 2 0.00 2 100 1 3 25.00 4 101 0 1 0.00 1 102 0 1 0.00 1 103 0 1 0.00 1 104 0 1 0.00 1 105 0 2 0.00 2 106 0 0 0 107 0 0 0 108 0 2 0.00 2 109 0 0 0 110 0 0 0 111 0 0 0 112 0 0 0 113 0 0 0 114 0 0 0 115 0 0 0 116 0 1 0.00 1 117 0 0 0 118 0 2 0.00 2 119 0 0 0 120 0 0 0 121 0 0 0 122 0 0 0 123 0 2 0.00 2 124 0 0 0 125 0 0 0 126 0 0 0 127 0 1 0.00 1 128 0 2 0.00 2 129 0 0 0 130 0 0 0 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29 91 24.17 120 2 17 82 17.17 99 3 38 87 30.40 125 4 17 89 16.04 106 5 28 65 30.11 93 6 10 82 10.87 92 7 32 60 34.78 92 8 15 71 17.44 86 9 32 77 29.36 109 10 20 77 20.62 97 11 39 60 39.39 99 12 20 82 19.61 102 13 35 99 26.12 134 14 18 97 15.65 115 15 30 102 22.73 132 16 15 96 13.51 111 17 31 78 28.44 109 18 13 50 20.63 63 19 28 55 33.73 83 20 12 50 19.35 62 21 26 64 28.89 90 22 12 51 19.05 63 23 29 53 35.37 82 24 11 51 17.74 62 25 26 50 34.21 76 26 8 54 12.90 62 27 24 43 35.82 67 28 8 59 11.94 67 29 25 51 32.89 76 30 7 61 10.29 68 31 24 48 33.33 72 32 12 47 20.34 59 33 27 55 32.93 82 34 11 54 16.92 65 35 21 41 33.87 62 36 9 46 16.36 55 37 22 52 29.73 74 38 7 48 12.73 55 39 26 41 38.81 67 40 7 45 13.46 52 41 22 39 36.07 61 42 10 39 20.41 49 43 21 48 30.43 69 44 9 33 21.43 42 45 24 41 36.92 65 46 6 39 13.33 45 47 19 29 39.58 48 48 7 33 17.50 40 49 17 34 33.33 51 50 5 41 10.87 46 51 18 38 32.14 56 52 4 38 9.52 42 53 15 33 31.25 48 54 8 34 19.05 42 55 15 34 30.61 49 56 6 30 16.67 36 57 17 31 35.42 48 58 4 32 11.11 36 59 18 35 33.96 53 60 8 36 18.18 44 61 14 28 33.33 42 62 8 28 22.22 36 63 14 25 35.90 39 64 7 30 18.92 37 65 17 29 36.96 46 66 8 27 22.86 35 67 14 29 32.56 43 68 6 30 16.67 36 69 14 25 35.90 39 70 7 32 17.95 39 71 15 26 36.59 41 72 8 24 25.00 32 73 14 27 34.15 41 74 8 26 23.53 34 75 12 24 33.33 36 76 3 32 8.57 35 77 13 23 36.11 36 78 4 27 12.90 31 79 11 25 30.56 36 80 4 24 14.29 28 81 10 21 32.26 31 82 3 23 11.54 26 83 8 22 26.67 30 84 5 23 17.86 28 85 8 23 25.81 31 86 4 22 15.38 26 87 7 21 25.00 28 88 3 18 14.29 21 89 10 17 37.04 27 90 3 21 12.50 24 91 8 17 32.00 25 92 4 16 20.00 20 93 7 15 31.82 22 94 4 21 16.00 25 95 8 17 32.00 25 96 4 19 17.39 23 97 5 15 25.00 20 98 4 18 18.18 22 99 5 19 20.83 24 100 4 20 16.67 24 101 2 22 8.33 24 102 3 16 15.79 19 103 5 14 26.32 19 104 3 14 17.65 17 105 5 18 21.74 23 106 2 17 10.53 19 107 4 16 20.00 20 108 1 16 5.88 17 109 5 20 20.00 25 110 2 13 13.33 15 111 5 19 20.83 24 112 1 16 5.88 17 113 2 17 10.53 19 114 1 15 6.25 16 115 3 18 14.29 21 116 1 11 8.33 12 117 1 19 5.00 20 118 2 12 14.29 14 119 2 22 8.33 24 120 3 12 20.00 15 121 1 22 4.35 23 122 1 11 8.33 12 123 1 17 5.56 18 124 1 12 7.69 13 125 1 18 5.26 19 126 1 9 10.00 10 127 4 16 20.00 20 128 1 8 11.11 9 129 2 17 10.53 19 130 1 7 12.50 8 131 1 0 100.00 1