/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10979
Pairs without alignments under any condition
23540
Pairs that did not map uniquely
5481
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
332903
Methylated C's in CpG context
34746
Methylated C's in CHG context
1632
Methylated C's in CHH context
32624
Methylated C's in Unknown context
460
Unmethylated C's in CpG context
15604
Unmethylated C's in CHG context
61648
Unmethylated C's in CHH context
186649
Unmethylated C's in Unknown context
1249
Percentage methylation (CpG context)
69.0%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
14.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5518
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5461
original bottom strand
Deduplication
Alignments analysed
10979
Unique alignments
8895
Duplicates removed
2084
Duplicated alignments were found at 1583 different positions
