CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 298 75 79.89 373 2 347 88 79.77 435 3 282 106 72.68 388 4 255 85 75.00 340 5 277 97 74.06 374 6 283 116 70.93 399 7 255 89 74.13 344 8 241 95 71.73 336 9 259 87 74.86 346 10 265 89 74.86 354 11 281 101 73.56 382 12 290 81 78.17 371 13 311 78 79.95 389 14 270 89 75.21 359 15 320 104 75.47 424 16 263 74 78.04 337 17 260 93 73.65 353 18 259 101 71.94 360 19 254 83 75.37 337 20 311 86 78.34 397 21 297 96 75.57 393 22 276 104 72.63 380 23 288 96 75.00 384 24 299 94 76.08 393 25 275 92 74.93 367 26 278 103 72.97 381 27 281 86 76.57 367 28 290 88 76.72 378 29 279 89 75.82 368 30 285 103 73.45 388 31 298 83 78.22 381 32 254 97 72.36 351 33 294 79 78.82 373 34 300 89 77.12 389 35 269 68 79.82 337 36 283 87 76.49 370 37 256 81 75.96 337 38 253 79 76.20 332 39 245 80 75.38 325 40 259 82 75.95 341 41 254 79 76.28 333 42 247 68 78.41 315 43 213 77 73.45 290 44 232 59 79.73 291 45 242 92 72.46 334 46 240 77 75.71 317 47 253 69 78.57 322 48 226 70 76.35 296 49 212 71 74.91 283 50 212 80 72.60 292 51 255 58 81.47 313 52 204 79 72.08 283 53 212 59 78.23 271 54 228 63 78.35 291 55 184 64 74.19 248 56 197 52 79.12 249 57 200 63 76.05 263 58 173 73 70.33 246 59 207 58 78.11 265 60 163 62 72.44 225 61 187 51 78.57 238 62 191 59 76.40 250 63 180 53 77.25 233 64 167 72 69.87 239 65 161 47 77.40 208 66 171 50 77.38 221 67 146 56 72.28 202 68 164 58 73.87 222 69 183 68 72.91 251 70 171 44 79.53 215 71 137 48 74.05 185 72 121 43 73.78 164 73 138 49 73.80 187 74 137 56 70.98 193 75 154 48 76.24 202 76 114 44 72.15 158 77 130 40 76.47 170 78 131 43 75.29 174 79 142 34 80.68 176 80 125 41 75.30 166 81 109 38 74.15 147 82 121 28 81.21 149 83 108 39 73.47 147 84 131 40 76.61 171 85 108 25 81.20 133 86 94 37 71.76 131 87 110 26 80.88 136 88 96 32 75.00 128 89 97 23 80.83 120 90 85 49 63.43 134 91 72 37 66.06 109 92 67 29 69.79 96 93 84 26 76.36 110 94 77 35 68.75 112 95 80 35 69.57 115 96 67 31 68.37 98 97 66 27 70.97 93 98 73 28 72.28 101 99 64 29 68.82 93 100 75 28 72.82 103 101 83 21 79.81 104 102 62 28 68.89 90 103 84 20 80.77 104 104 61 29 67.78 90 105 63 25 71.59 88 106 66 20 76.74 86 107 55 20 73.33 75 108 62 21 74.70 83 109 67 17 79.76 84 110 45 24 65.22 69 111 43 23 65.15 66 112 60 18 76.92 78 113 56 22 71.79 78 114 52 14 78.79 66 115 45 22 67.16 67 116 41 26 61.19 67 117 47 10 82.46 57 118 41 15 73.21 56 119 56 20 73.68 76 120 46 13 77.97 59 121 34 11 75.56 45 122 42 17 71.19 59 123 32 15 68.09 47 124 29 11 72.50 40 125 28 12 70.00 40 126 33 13 71.74 46 127 32 9 78.05 41 128 33 20 62.26 53 129 38 11 77.55 49 130 21 10 67.74 31 131 16 12 57.14 28 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 43 412 9.45 455 2 25 415 5.68 440 3 24 395 5.73 419 4 16 378 4.06 394 5 18 433 3.99 451 6 27 398 6.35 425 7 10 399 2.44 409 8 16 406 3.79 422 9 9 379 2.32 388 10 12 428 2.73 440 11 18 474 3.66 492 12 19 400 4.53 419 13 12 427 2.73 439 14 9 462 1.91 471 15 11 444 2.42 455 16 17 387 4.21 404 17 14 424 3.20 438 18 11 425 2.52 436 19 9 408 2.16 417 20 10 427 2.29 437 21 11 418 2.56 429 22 11 439 2.44 450 23 17 441 3.71 458 24 7 418 1.65 425 25 10 403 2.42 413 26 11 414 2.59 425 27 12 405 2.88 417 28 10 428 2.28 438 29 12 451 2.59 463 30 16 413 3.73 429 31 13 409 3.08 422 32 10 421 2.32 431 33 10 402 2.43 412 34 12 394 2.96 406 35 10 424 2.30 434 36 9 408 2.16 417 37 7 388 1.77 395 38 12 409 2.85 421 39 7 391 1.76 398 40 13 351 3.57 364 41 12 374 3.11 386 42 9 379 2.32 388 43 9 347 2.53 356 44 7 382 1.80 389 45 10 378 2.58 388 46 7 389 1.77 396 47 4 352 1.12 356 48 5 343 1.44 348 49 10 325 2.99 335 50 11 357 2.99 368 51 6 353 1.67 359 52 5 290 1.69 295 53 6 321 1.83 327 54 6 305 1.93 311 55 4 314 1.26 318 56 7 313 2.19 320 57 5 289 1.70 294 58 11 324 3.28 335 59 7 297 2.30 304 60 9 316 2.77 325 61 8 294 2.65 302 62 11 287 3.69 298 63 6 295 1.99 301 64 9 257 3.38 266 65 4 263 1.50 267 66 3 238 1.24 241 67 8 250 3.10 258 68 5 265 1.85 270 69 3 248 1.20 251 70 2 239 0.83 241 71 3 248 1.20 251 72 3 260 1.14 263 73 3 236 1.26 239 74 1 233 0.43 234 75 6 204 2.86 210 76 4 186 2.11 190 77 4 236 1.67 240 78 2 199 1.00 201 79 4 209 1.88 213 80 4 185 2.12 189 81 1 173 0.57 174 82 4 179 2.19 183 83 2 170 1.16 172 84 1 174 0.57 175 85 4 181 2.16 185 86 2 171 1.16 173 87 2 160 1.23 162 88 2 148 1.33 150 89 2 149 1.32 151 90 2 175 1.13 177 91 1 123 0.81 124 92 3 158 1.86 161 93 3 140 2.10 143 94 2 136 1.45 138 95 2 136 1.45 138 96 3 131 2.24 134 97 0 108 0.00 108 98 3 129 2.27 132 99 1 124 0.80 125 100 0 118 0.00 118 101 0 130 0.00 130 102 0 115 0.00 115 103 0 98 0.00 98 104 2 113 1.74 115 105 2 117 1.68 119 106 2 85 2.30 87 107 2 101 1.94 103 108 0 87 0.00 87 109 1 92 1.08 93 110 5 105 4.55 110 111 2 87 2.25 89 112 0 94 0.00 94 113 1 86 1.15 87 114 3 77 3.75 80 115 1 79 1.25 80 116 3 74 3.90 77 117 0 80 0.00 80 118 3 62 4.62 65 119 2 69 2.82 71 120 0 59 0.00 59 121 3 66 4.35 69 122 1 71 1.39 72 123 1 59 1.67 60 124 3 54 5.26 57 125 1 72 1.37 73 126 0 63 0.00 63 127 2 51 3.77 53 128 1 52 1.89 53 129 3 52 5.45 55 130 0 40 0.00 40 131 1 38 2.56 39 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 250 1052 19.20 1302 2 241 1039 18.83 1280 3 219 1029 17.55 1248 4 213 1042 16.97 1255 5 230 1060 17.83 1290 6 201 1066 15.86 1267 7 201 1023 16.42 1224 8 194 1016 16.03 1210 9 208 1057 16.44 1265 10 229 1028 18.22 1257 11 216 1015 17.55 1231 12 209 1080 16.21 1289 13 226 1061 17.56 1287 14 218 1087 16.70 1305 15 214 1057 16.84 1271 16 202 1125 15.22 1327 17 219 1136 16.16 1355 18 205 1118 15.50 1323 19 204 1125 15.35 1329 20 228 1145 16.61 1373 21 184 1188 13.41 1372 22 219 1112 16.45 1331 23 181 1139 13.71 1320 24 222 1137 16.34 1359 25 195 1161 14.38 1356 26 219 1185 15.60 1404 27 205 1144 15.20 1349 28 217 1118 16.25 1335 29 193 1125 14.64 1318 30 205 1113 15.55 1318 31 198 1112 15.11 1310 32 180 1085 14.23 1265 33 202 1094 15.59 1296 34 202 1022 16.50 1224 35 169 1127 13.04 1296 36 164 1083 13.15 1247 37 152 1058 12.56 1210 38 168 1054 13.75 1222 39 140 1016 12.11 1156 40 157 1046 13.05 1203 41 147 1039 12.39 1186 42 150 1022 12.80 1172 43 136 1026 11.70 1162 44 141 1010 12.25 1151 45 136 1016 11.81 1152 46 132 945 12.26 1077 47 120 973 10.98 1093 48 138 947 12.72 1085 49 103 906 10.21 1009 50 122 917 11.74 1039 51 101 909 10.00 1010 52 119 885 11.85 1004 53 117 836 12.28 953 54 133 888 13.03 1021 55 115 839 12.05 954 56 101 844 10.69 945 57 106 849 11.10 955 58 95 757 11.15 852 59 91 786 10.38 877 60 111 766 12.66 877 61 114 737 13.40 851 62 98 712 12.10 810 63 87 727 10.69 814 64 91 742 10.92 833 65 79 696 10.19 775 66 95 737 11.42 832 67 85 662 11.38 747 68 81 654 11.02 735 69 72 681 9.56 753 70 93 636 12.76 729 71 66 630 9.48 696 72 83 690 10.74 773 73 76 606 11.14 682 74 80 571 12.29 651 75 66 581 10.20 647 76 68 579 10.51 647 77 70 555 11.20 625 78 66 602 9.88 668 79 60 530 10.17 590 80 64 505 11.25 569 81 66 527 11.13 593 82 71 537 11.68 608 83 53 508 9.45 561 84 60 508 10.56 568 85 54 486 10.00 540 86 53 493 9.71 546 87 50 465 9.71 515 88 48 438 9.88 486 89 42 452 8.50 494 90 43 423 9.23 466 91 39 423 8.44 462 92 44 417 9.54 461 93 47 439 9.67 486 94 42 413 9.23 455 95 37 395 8.56 432 96 40 368 9.80 408 97 41 346 10.59 387 98 41 378 9.79 419 99 40 368 9.80 408 100 28 367 7.09 395 101 34 369 8.44 403 102 25 353 6.61 378 103 37 336 9.92 373 104 31 314 8.99 345 105 42 303 12.17 345 106 30 289 9.40 319 107 34 269 11.22 303 108 23 294 7.26 317 109 31 262 10.58 293 110 26 266 8.90 292 111 29 243 10.66 272 112 25 248 9.16 273 113 25 251 9.06 276 114 25 253 8.99 278 115 28 261 9.69 289 116 24 230 9.45 254 117 29 239 10.82 268 118 23 240 8.75 263 119 30 228 11.63 258 120 19 220 7.95 239 121 21 213 8.97 234 122 25 214 10.46 239 123 26 198 11.61 224 124 14 210 6.25 224 125 17 209 7.52 226 126 17 174 8.90 191 127 18 206 8.04 224 128 18 187 8.78 205 129 15 167 8.24 182 130 17 165 9.34 182 131 13 116 10.08 129 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25 16 60.98 41 2 28 11 71.79 39 3 29 16 64.44 45 4 29 13 69.05 42 5 21 10 67.74 31 6 26 14 65.00 40 7 23 5 82.14 28 8 23 17 57.50 40 9 26 16 61.90 42 10 33 5 86.84 38 11 22 11 66.67 33 12 25 10 71.43 35 13 22 13 62.86 35 14 14 10 58.33 24 15 19 4 82.61 23 16 17 6 73.91 23 17 19 9 67.86 28 18 14 8 63.64 22 19 16 8 66.67 24 20 12 11 52.17 23 21 11 8 57.89 19 22 8 5 61.54 13 23 20 8 71.43 28 24 11 7 61.11 18 25 12 7 63.16 19 26 8 4 66.67 12 27 10 6 62.50 16 28 10 10 50.00 20 29 15 5 75.00 20 30 10 6 62.50 16 31 12 7 63.16 19 32 10 11 47.62 21 33 11 7 61.11 18 34 8 3 72.73 11 35 10 2 83.33 12 36 8 2 80.00 10 37 6 3 66.67 9 38 7 6 53.85 13 39 10 3 76.92 13 40 16 2 88.89 18 41 6 3 66.67 9 42 9 4 69.23 13 43 8 5 61.54 13 44 5 2 71.43 7 45 6 3 66.67 9 46 6 0 100.00 6 47 10 5 66.67 15 48 6 3 66.67 9 49 8 5 61.54 13 50 2 4 33.33 6 51 4 4 50.00 8 52 8 1 88.89 9 53 12 9 57.14 21 54 4 2 66.67 6 55 6 5 54.55 11 56 7 3 70.00 10 57 5 2 71.43 7 58 1 1 50.00 2 59 7 2 77.78 9 60 4 1 80.00 5 61 2 2 50.00 4 62 4 3 57.14 7 63 4 4 50.00 8 64 3 6 33.33 9 65 5 7 41.67 12 66 2 4 33.33 6 67 4 3 57.14 7 68 3 2 60.00 5 69 2 1 66.67 3 70 8 0 100.00 8 71 1 3 25.00 4 72 3 1 75.00 4 73 4 3 57.14 7 74 1 3 25.00 4 75 8 1 88.89 9 76 3 1 75.00 4 77 1 2 33.33 3 78 0 2 0.00 2 79 2 1 66.67 3 80 1 0 100.00 1 81 2 0 100.00 2 82 1 0 100.00 1 83 2 1 66.67 3 84 2 1 66.67 3 85 2 1 66.67 3 86 1 4 20.00 5 87 5 0 100.00 5 88 1 1 50.00 2 89 1 0 100.00 1 90 2 1 66.67 3 91 1 1 50.00 2 92 1 3 25.00 4 93 1 1 50.00 2 94 0 4 0.00 4 95 1 0 100.00 1 96 1 1 50.00 2 97 3 1 75.00 4 98 3 2 60.00 5 99 0 1 0.00 1 100 2 0 100.00 2 101 0 0 0 102 2 0 100.00 2 103 0 0 0 104 1 1 50.00 2 105 2 0 100.00 2 106 1 0 100.00 1 107 1 0 100.00 1 108 2 2 50.00 4 109 0 0 0 110 1 1 50.00 2 111 1 1 50.00 2 112 0 1 0.00 1 113 2 0 100.00 2 114 1 0 100.00 1 115 1 1 50.00 2 116 1 1 50.00 2 117 3 0 100.00 3 118 0 0 0 119 1 0 100.00 1 120 0 3 0.00 3 121 2 0 100.00 2 122 1 1 50.00 2 123 1 1 50.00 2 124 0 0 0 125 1 0 100.00 1 126 2 1 66.67 3 127 0 0 0 128 0 0 0 129 0 0 0 130 0 1 0.00 1 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 55 3.51 57 2 6 57 9.52 63 3 4 46 8.00 50 4 1 39 2.50 40 5 0 39 0.00 39 6 0 49 0.00 49 7 0 38 0.00 38 8 3 52 5.45 55 9 0 43 0.00 43 10 0 49 0.00 49 11 0 56 0.00 56 12 1 41 2.38 42 13 0 45 0.00 45 14 0 42 0.00 42 15 2 30 6.25 32 16 0 36 0.00 36 17 0 43 0.00 43 18 1 30 3.23 31 19 0 28 0.00 28 20 1 30 3.23 31 21 0 25 0.00 25 22 0 38 0.00 38 23 0 27 0.00 27 24 1 30 3.23 31 25 0 26 0.00 26 26 0 25 0.00 25 27 0 27 0.00 27 28 0 19 0.00 19 29 0 29 0.00 29 30 0 25 0.00 25 31 1 20 4.76 21 32 0 22 0.00 22 33 1 20 4.76 21 34 1 25 3.85 26 35 0 18 0.00 18 36 1 23 4.17 24 37 1 15 6.25 16 38 0 15 0.00 15 39 1 18 5.26 19 40 0 13 0.00 13 41 2 9 18.18 11 42 0 13 0.00 13 43 1 20 4.76 21 44 0 18 0.00 18 45 1 12 7.69 13 46 1 13 7.14 14 47 0 18 0.00 18 48 0 16 0.00 16 49 0 8 0.00 8 50 0 14 0.00 14 51 0 11 0.00 11 52 0 8 0.00 8 53 0 9 0.00 9 54 0 10 0.00 10 55 1 7 12.50 8 56 0 10 0.00 10 57 0 10 0.00 10 58 0 11 0.00 11 59 0 11 0.00 11 60 0 10 0.00 10 61 1 11 8.33 12 62 2 2 50.00 4 63 0 9 0.00 9 64 0 9 0.00 9 65 0 7 0.00 7 66 1 7 12.50 8 67 1 4 20.00 5 68 0 6 0.00 6 69 0 5 0.00 5 70 0 4 0.00 4 71 0 7 0.00 7 72 0 9 0.00 9 73 0 2 0.00 2 74 0 4 0.00 4 75 0 7 0.00 7 76 0 7 0.00 7 77 0 2 0.00 2 78 0 4 0.00 4 79 0 5 0.00 5 80 0 6 0.00 6 81 0 5 0.00 5 82 0 6 0.00 6 83 0 4 0.00 4 84 0 7 0.00 7 85 0 3 0.00 3 86 0 3 0.00 3 87 0 4 0.00 4 88 0 3 0.00 3 89 0 3 0.00 3 90 0 5 0.00 5 91 0 2 0.00 2 92 0 3 0.00 3 93 0 7 0.00 7 94 0 3 0.00 3 95 0 2 0.00 2 96 0 5 0.00 5 97 0 2 0.00 2 98 0 1 0.00 1 99 0 3 0.00 3 100 0 6 0.00 6 101 0 1 0.00 1 102 0 2 0.00 2 103 0 2 0.00 2 104 0 2 0.00 2 105 0 4 0.00 4 106 0 1 0.00 1 107 0 1 0.00 1 108 0 5 0.00 5 109 0 3 0.00 3 110 0 3 0.00 3 111 0 4 0.00 4 112 0 2 0.00 2 113 0 3 0.00 3 114 0 5 0.00 5 115 0 1 0.00 1 116 0 4 0.00 4 117 1 0 100.00 1 118 0 2 0.00 2 119 0 2 0.00 2 120 0 2 0.00 2 121 0 4 0.00 4 122 0 3 0.00 3 123 0 1 0.00 1 124 0 3 0.00 3 125 0 3 0.00 3 126 0 6 0.00 6 127 0 0 0 128 0 2 0.00 2 129 0 2 0.00 2 130 0 1 0.00 1 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20 163 10.93 183 2 11 149 6.88 160 3 25 166 13.09 191 4 16 160 9.09 176 5 14 148 8.64 162 6 13 133 8.90 146 7 20 148 11.90 168 8 13 145 8.23 158 9 16 131 10.88 147 10 12 127 8.63 139 11 13 127 9.29 140 12 13 128 9.22 141 13 22 122 15.28 144 14 11 141 7.24 152 15 21 128 14.09 149 16 12 120 9.09 132 17 20 117 14.60 137 18 11 113 8.87 124 19 20 101 16.53 121 20 9 96 8.57 105 21 22 93 19.13 115 22 11 79 12.22 90 23 14 81 14.74 95 24 9 75 10.71 84 25 14 86 14.00 100 26 9 70 11.39 79 27 12 84 12.50 96 28 10 86 10.42 96 29 12 96 11.11 108 30 10 75 11.76 85 31 11 67 14.10 78 32 10 63 13.70 73 33 10 59 14.49 69 34 13 69 15.85 82 35 8 64 11.11 72 36 8 82 8.89 90 37 13 69 15.85 82 38 8 76 9.52 84 39 12 70 14.63 82 40 9 72 11.11 81 41 9 65 12.16 74 42 8 51 13.56 59 43 14 60 18.92 74 44 10 55 15.38 65 45 9 65 12.16 74 46 8 51 13.56 59 47 13 52 20.00 65 48 9 55 14.06 64 49 11 56 16.42 67 50 6 47 11.32 53 51 8 45 15.09 53 52 8 49 14.04 57 53 7 49 12.50 56 54 7 49 12.50 56 55 13 54 19.40 67 56 6 43 12.24 49 57 8 35 18.60 43 58 7 50 12.28 57 59 9 51 15.00 60 60 4 45 8.16 49 61 8 37 17.78 45 62 7 39 15.22 46 63 12 43 21.82 55 64 6 38 13.64 44 65 5 40 11.11 45 66 4 33 10.81 37 67 10 42 19.23 52 68 6 36 14.29 42 69 8 34 19.05 42 70 6 37 13.95 43 71 10 36 21.74 46 72 5 28 15.15 33 73 7 33 17.50 40 74 4 35 10.26 39 75 5 32 13.51 37 76 6 34 15.00 40 77 4 38 9.52 42 78 6 34 15.00 40 79 8 33 19.51 41 80 5 32 13.51 37 81 4 29 12.12 33 82 5 26 16.13 31 83 8 25 24.24 33 84 6 33 15.38 39 85 6 29 17.14 35 86 5 26 16.13 31 87 6 22 21.43 28 88 5 30 14.29 35 89 7 24 22.58 31 90 3 26 10.34 29 91 8 18 30.77 26 92 3 20 13.04 23 93 7 26 21.21 33 94 5 28 15.15 33 95 5 20 20.00 25 96 1 29 3.33 30 97 6 18 25.00 24 98 3 23 11.54 26 99 4 20 16.67 24 100 3 19 13.64 22 101 6 20 23.08 26 102 1 27 3.57 28 103 7 17 29.17 24 104 3 29 9.38 32 105 4 18 18.18 22 106 2 21 8.70 23 107 3 18 14.29 21 108 1 22 4.35 23 109 3 20 13.04 23 110 1 24 4.00 25 111 1 16 5.88 17 112 3 19 13.64 22 113 2 21 8.70 23 114 2 15 11.76 17 115 2 23 8.00 25 116 0 17 0.00 17 117 2 22 8.33 24 118 3 19 13.64 22 119 3 17 15.00 20 120 1 15 6.25 16 121 3 13 18.75 16 122 1 16 5.88 17 123 1 21 4.55 22 124 2 20 9.09 22 125 1 21 4.55 22 126 1 19 5.00 20 127 0 17 0.00 17 128 3 20 13.04 23 129 2 18 10.00 20 130 1 16 5.88 17 131 1 1 50.00 2