/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R2_001_val_2.fq.gz
Data processed at 23:17 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11352
Pairs without alignments under any condition
24337
Pairs that did not map uniquely
4311
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
409570
Methylated C's in CpG context
53224
Methylated C's in CHG context
2108
Methylated C's in CHH context
30914
Methylated C's in Unknown context
527
Unmethylated C's in CpG context
17656
Unmethylated C's in CHG context
82830
Unmethylated C's in CHH context
222838
Unmethylated C's in Unknown context
1150
Percentage methylation (CpG context)
75.1%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
12.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5605
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5747
original bottom strand
Deduplication
Alignments analysed
11352
Unique alignments
9403
Duplicates removed
1949
Duplicated alignments were found at 1480 different positions
