File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10749	25236	4015	0	1840	8909	168782	21081	7485	854	33316	14267	91779
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10453	24414	5133	0	1973	8480	135244	13149	6324	713	23621	15510	75927
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11096	24527	4377	0	1884	9212	172593	17142	8815	828	32711	15071	98026
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10756	24552	4692	0	1860	8896	144407	13962	6787	874	26656	17873	78255
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	8170	25243	6587	0	1092	7078	109311	1448	10823	668	13419	36515	46438
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7805	27769	4426	0	1420	6385	114318	2977	12097	559	17712	20227	60746
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10579	26007	3414	0	1929	8650	178767	21761	7995	921	35844	13420	98826
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	9690	23982	6328	0	1463	8227	126279	7610	7672	799	19815	31099	59284
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7446	28479	4075	0	1315	6131	128426	1195	14635	467	19842	17120	75167
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11042	24534	4424	0	2204	8838	164008	14032	8179	923	29710	24588	86576
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11605	23146	5249	0	2059	9546	155000	17515	6968	1083	29638	22808	76988
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10586	25357	4057	0	1900	8686	164386	16239	9022	942	30255	18539	89389
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7454	28610	3936	0	1360	6094	120655	1238	13303	645	18904	15719	70846
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	8520	26290	5190	0	1348	7172	138533	1088	13819	513	18500	17978	86635
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11144	23373	5483	0	1839	9305	146989	13923	6566	967	24613	23372	77548
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11691	23421	4888	0	2053	9638	195511	10484	11037	913	31121	24109	117847
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10849	25410	3741	0	2021	8828	162498	16200	7845	1230	30912	18066	88245
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11202	24587	4211	0	1776	9426	164305	17292	7026	1073	30934	17231	90749
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	9279	25157	5564	0	1323	7956	128614	4466	9817	853	18524	36046	58908
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11301	23747	4952	0	1983	9318	149633	13408	6916	910	26372	18632	83395