CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 159 100 61.39 259 2 192 99 65.98 291 3 160 79 66.95 239 4 178 89 66.67 267 5 190 89 68.10 279 6 172 95 64.42 267 7 172 80 68.25 252 8 153 92 62.45 245 9 165 83 66.53 248 10 180 94 65.69 274 11 167 80 67.61 247 12 162 92 63.78 254 13 211 94 69.18 305 14 180 86 67.67 266 15 225 86 72.35 311 16 179 80 69.11 259 17 176 91 65.92 267 18 208 82 71.72 290 19 176 88 66.67 264 20 183 77 70.38 260 21 191 79 70.74 270 22 187 103 64.48 290 23 190 87 68.59 277 24 214 88 70.86 302 25 187 82 69.52 269 26 182 87 67.66 269 27 192 77 71.38 269 28 171 76 69.23 247 29 184 97 65.48 281 30 173 79 68.65 252 31 187 89 67.75 276 32 163 89 64.68 252 33 177 93 65.56 270 34 172 82 67.72 254 35 163 86 65.46 249 36 188 92 67.14 280 37 154 83 64.98 237 38 161 77 67.65 238 39 172 65 72.57 237 40 170 85 66.67 255 41 167 74 69.29 241 42 164 85 65.86 249 43 158 78 66.95 236 44 143 74 65.90 217 45 151 71 68.02 222 46 134 70 65.69 204 47 134 73 64.73 207 48 157 60 72.35 217 49 122 66 64.89 188 50 137 63 68.50 200 51 101 63 61.59 164 52 130 64 67.01 194 53 140 48 74.47 188 54 152 63 70.70 215 55 130 53 71.04 183 56 126 57 68.85 183 57 119 63 65.38 182 58 87 69 55.77 156 59 114 45 71.70 159 60 94 47 66.67 141 61 106 41 72.11 147 62 107 60 64.07 167 63 98 51 65.77 149 64 101 59 63.12 160 65 103 45 69.59 148 66 114 48 70.37 162 67 88 41 68.22 129 68 85 44 65.89 129 69 82 44 65.08 126 70 89 52 63.12 141 71 68 34 66.67 102 72 84 32 72.41 116 73 82 41 66.67 123 74 76 44 63.33 120 75 65 33 66.33 98 76 83 32 72.17 115 77 81 34 70.43 115 78 59 44 57.28 103 79 69 29 70.41 98 80 75 35 68.18 110 81 46 26 63.89 72 82 42 33 56.00 75 83 59 26 69.41 85 84 54 37 59.34 91 85 51 29 63.75 80 86 56 28 66.67 84 87 43 23 65.15 66 88 43 21 67.19 64 89 44 27 61.97 71 90 47 22 68.12 69 91 51 34 60.00 85 92 45 40 52.94 85 93 40 26 60.61 66 94 43 20 68.25 63 95 44 17 72.13 61 96 35 24 59.32 59 97 32 26 55.17 58 98 30 23 56.60 53 99 20 27 42.55 47 100 33 23 58.93 56 101 35 20 63.64 55 102 29 20 59.18 49 103 25 16 60.98 41 104 33 22 60.00 55 105 30 15 66.67 45 106 27 17 61.36 44 107 33 9 78.57 42 108 27 13 67.50 40 109 25 17 59.52 42 110 22 19 53.66 41 111 29 10 74.36 39 112 19 18 51.35 37 113 19 9 67.86 28 114 16 11 59.26 27 115 21 13 61.76 34 116 20 12 62.50 32 117 11 11 50.00 22 118 27 19 58.70 46 119 17 11 60.71 28 120 18 12 60.00 30 121 15 9 62.50 24 122 16 9 64.00 25 123 7 7 50.00 14 124 26 6 81.25 32 125 14 10 58.33 24 126 15 9 62.50 24 127 14 9 60.87 23 128 10 9 52.63 19 129 9 11 45.00 20 130 6 5 54.55 11 131 10 7 58.82 17 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 63 337 15.75 400 2 14 321 4.18 335 3 14 347 3.88 361 4 29 299 8.84 328 5 28 317 8.12 345 6 19 329 5.46 348 7 13 304 4.10 317 8 14 348 3.87 362 9 10 346 2.81 356 10 15 329 4.36 344 11 16 335 4.56 351 12 14 364 3.70 378 13 15 368 3.92 383 14 13 371 3.39 384 15 8 352 2.22 360 16 12 365 3.18 377 17 10 339 2.87 349 18 8 324 2.41 332 19 9 364 2.41 373 20 10 392 2.49 402 21 8 401 1.96 409 22 15 353 4.08 368 23 12 380 3.06 392 24 12 347 3.34 359 25 13 345 3.63 358 26 13 373 3.37 386 27 15 338 4.25 353 28 9 344 2.55 353 29 8 376 2.08 384 30 9 337 2.60 346 31 10 364 2.67 374 32 8 351 2.23 359 33 13 356 3.52 369 34 7 324 2.11 331 35 8 314 2.48 322 36 11 334 3.19 345 37 12 320 3.61 332 38 7 321 2.13 328 39 11 320 3.32 331 40 10 321 3.02 331 41 8 307 2.54 315 42 7 286 2.39 293 43 14 287 4.65 301 44 8 288 2.70 296 45 7 264 2.58 271 46 10 244 3.94 254 47 6 281 2.09 287 48 3 241 1.23 244 49 6 249 2.35 255 50 8 246 3.15 254 51 4 253 1.56 257 52 11 254 4.15 265 53 3 221 1.34 224 54 8 235 3.29 243 55 5 254 1.93 259 56 4 234 1.68 238 57 5 246 1.99 251 58 11 210 4.98 221 59 10 203 4.69 213 60 7 210 3.23 217 61 1 195 0.51 196 62 9 201 4.29 210 63 4 188 2.08 192 64 8 200 3.85 208 65 6 200 2.91 206 66 7 163 4.12 170 67 4 180 2.17 184 68 3 166 1.78 169 69 3 177 1.67 180 70 5 165 2.94 170 71 5 173 2.81 178 72 8 135 5.59 143 73 11 187 5.56 198 74 5 144 3.36 149 75 2 157 1.26 159 76 2 147 1.34 149 77 7 147 4.55 154 78 4 123 3.15 127 79 1 136 0.73 137 80 4 121 3.20 125 81 1 128 0.78 129 82 2 139 1.42 141 83 4 100 3.85 104 84 2 104 1.89 106 85 5 114 4.20 119 86 1 97 1.02 98 87 3 83 3.49 86 88 1 101 0.98 102 89 2 95 2.06 97 90 4 106 3.64 110 91 2 96 2.04 98 92 1 84 1.18 85 93 0 91 0.00 91 94 4 85 4.49 89 95 0 76 0.00 76 96 3 86 3.37 89 97 0 99 0.00 99 98 1 56 1.75 57 99 2 73 2.67 75 100 2 82 2.38 84 101 2 76 2.56 78 102 1 66 1.49 67 103 1 75 1.32 76 104 0 59 0.00 59 105 2 53 3.64 55 106 2 56 3.45 58 107 1 68 1.45 69 108 2 40 4.76 42 109 3 52 5.45 55 110 0 58 0.00 58 111 0 44 0.00 44 112 1 47 2.08 48 113 2 53 3.64 55 114 3 34 8.11 37 115 0 52 0.00 52 116 1 36 2.70 37 117 1 51 1.92 52 118 1 34 2.86 35 119 0 46 0.00 46 120 1 40 2.44 41 121 2 39 4.88 41 122 1 31 3.12 32 123 1 27 3.57 28 124 0 41 0.00 41 125 1 39 2.50 40 126 0 28 0.00 28 127 1 34 2.86 35 128 2 25 7.41 27 129 2 29 6.45 31 130 3 22 12.00 25 131 1 12 7.69 13 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 290 985 22.75 1275 2 238 1061 18.32 1299 3 237 975 19.55 1212 4 259 1050 19.79 1309 5 278 1023 21.37 1301 6 237 1034 18.65 1271 7 280 978 22.26 1258 8 220 1021 17.73 1241 9 276 1025 21.21 1301 10 284 1038 21.48 1322 11 270 1019 20.95 1289 12 274 955 22.29 1229 13 272 1025 20.97 1297 14 283 1011 21.87 1294 15 235 1004 18.97 1239 16 272 1013 21.17 1285 17 258 1047 19.77 1305 18 266 1053 20.17 1319 19 276 1040 20.97 1316 20 292 1092 21.10 1384 21 278 1039 21.11 1317 22 266 1046 20.27 1312 23 263 1000 20.82 1263 24 279 1132 19.77 1411 25 264 1041 20.23 1305 26 259 1059 19.65 1318 27 265 1049 20.17 1314 28 273 1056 20.54 1329 29 256 1065 19.38 1321 30 262 1074 19.61 1336 31 228 1028 18.15 1256 32 230 1007 18.59 1237 33 208 965 17.73 1173 34 224 1045 17.65 1269 35 212 980 17.79 1192 36 230 994 18.79 1224 37 207 946 17.95 1153 38 208 953 17.92 1161 39 195 968 16.77 1163 40 180 883 16.93 1063 41 186 865 17.70 1051 42 189 879 17.70 1068 43 207 879 19.06 1086 44 200 846 19.12 1046 45 167 858 16.29 1025 46 178 827 17.71 1005 47 149 834 15.16 983 48 182 835 17.90 1017 49 158 781 16.83 939 50 154 781 16.47 935 51 150 731 17.03 881 52 163 749 17.87 912 53 140 737 15.96 877 54 175 721 19.53 896 55 136 699 16.29 835 56 147 628 18.97 775 57 118 674 14.90 792 58 137 678 16.81 815 59 124 623 16.60 747 60 132 647 16.94 779 61 106 650 14.02 756 62 128 634 16.80 762 63 115 587 16.38 702 64 136 597 18.55 733 65 103 528 16.32 631 66 115 553 17.22 668 67 103 541 15.99 644 68 118 560 17.40 678 69 107 520 17.07 627 70 105 481 17.92 586 71 92 511 15.26 603 72 111 479 18.81 590 73 94 483 16.29 577 74 96 501 16.08 597 75 77 446 14.72 523 76 89 474 15.81 563 77 78 432 15.29 510 78 96 445 17.74 541 79 77 404 16.01 481 80 90 399 18.40 489 81 75 412 15.40 487 82 84 416 16.80 500 83 66 379 14.83 445 84 92 352 20.72 444 85 58 359 13.91 417 86 82 325 20.15 407 87 65 334 16.29 399 88 70 359 16.32 429 89 61 332 15.52 393 90 71 328 17.79 399 91 48 300 13.79 348 92 63 310 16.89 373 93 48 304 13.64 352 94 63 291 17.80 354 95 45 283 13.72 328 96 63 284 18.16 347 97 46 260 15.03 306 98 55 279 16.47 334 99 42 261 13.86 303 100 56 263 17.55 319 101 42 247 14.53 289 102 59 260 18.50 319 103 39 242 13.88 281 104 44 208 17.46 252 105 30 231 11.49 261 106 40 202 16.53 242 107 36 217 14.23 253 108 41 188 17.90 229 109 36 210 14.63 246 110 34 191 15.11 225 111 29 204 12.45 233 112 37 175 17.45 212 113 29 179 13.94 208 114 29 177 14.08 206 115 26 182 12.50 208 116 32 160 16.67 192 117 29 146 16.57 175 118 29 171 14.50 200 119 27 145 15.70 172 120 27 158 14.59 185 121 27 165 14.06 192 122 27 141 16.07 168 123 23 131 14.94 154 124 27 145 15.70 172 125 19 119 13.77 138 126 24 125 16.11 149 127 20 125 13.79 145 128 24 122 16.44 146 129 16 113 12.40 129 130 20 101 16.53 121 131 12 73 14.12 85 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10 12 45.45 22 2 17 8 68.00 25 3 31 9 77.50 40 4 16 9 64.00 25 5 8 11 42.11 19 6 5 7 41.67 12 7 7 10 41.18 17 8 12 10 54.55 22 9 5 12 29.41 17 10 7 16 30.43 23 11 10 14 41.67 24 12 9 8 52.94 17 13 14 12 53.85 26 14 9 6 60.00 15 15 9 7 56.25 16 16 12 10 54.55 22 17 6 9 40.00 15 18 3 8 27.27 11 19 7 8 46.67 15 20 7 4 63.64 11 21 2 5 28.57 7 22 2 3 40.00 5 23 7 3 70.00 10 24 4 4 50.00 8 25 8 7 53.33 15 26 6 6 50.00 12 27 3 5 37.50 8 28 6 3 66.67 9 29 11 7 61.11 18 30 5 6 45.45 11 31 5 0 100.00 5 32 6 7 46.15 13 33 2 4 33.33 6 34 6 7 46.15 13 35 6 2 75.00 8 36 4 5 44.44 9 37 5 5 50.00 10 38 1 8 11.11 9 39 3 4 42.86 7 40 1 7 12.50 8 41 4 6 40.00 10 42 4 4 50.00 8 43 0 1 0.00 1 44 5 2 71.43 7 45 3 3 50.00 6 46 6 4 60.00 10 47 3 1 75.00 4 48 5 3 62.50 8 49 1 3 25.00 4 50 1 4 20.00 5 51 4 2 66.67 6 52 0 4 0.00 4 53 2 2 50.00 4 54 2 3 40.00 5 55 2 0 100.00 2 56 4 2 66.67 6 57 0 1 0.00 1 58 2 2 50.00 4 59 1 2 33.33 3 60 0 1 0.00 1 61 2 4 33.33 6 62 2 3 40.00 5 63 1 0 100.00 1 64 1 1 50.00 2 65 4 1 80.00 5 66 2 1 66.67 3 67 1 0 100.00 1 68 0 2 0.00 2 69 2 2 50.00 4 70 0 3 0.00 3 71 2 0 100.00 2 72 0 2 0.00 2 73 0 2 0.00 2 74 0 2 0.00 2 75 0 0 0 76 0 1 0.00 1 77 2 1 66.67 3 78 1 1 50.00 2 79 0 0 0 80 0 3 0.00 3 81 1 0 100.00 1 82 2 2 50.00 4 83 1 0 100.00 1 84 0 2 0.00 2 85 2 0 100.00 2 86 0 2 0.00 2 87 0 1 0.00 1 88 0 2 0.00 2 89 0 2 0.00 2 90 0 3 0.00 3 91 1 1 50.00 2 92 0 2 0.00 2 93 1 0 100.00 1 94 0 3 0.00 3 95 0 1 0.00 1 96 1 1 50.00 2 97 0 0 0 98 1 2 33.33 3 99 1 1 50.00 2 100 0 1 0.00 1 101 1 1 50.00 2 102 0 2 0.00 2 103 0 0 0 104 1 1 50.00 2 105 0 0 0 106 1 2 33.33 3 107 1 0 100.00 1 108 0 1 0.00 1 109 0 1 0.00 1 110 0 2 0.00 2 111 0 1 0.00 1 112 0 1 0.00 1 113 0 0 0 114 1 2 33.33 3 115 0 1 0.00 1 116 1 1 50.00 2 117 0 0 0 118 0 3 0.00 3 119 0 0 0 120 0 0 0 121 0 0 0 122 0 1 0.00 1 123 0 1 0.00 1 124 1 0 100.00 1 125 0 1 0.00 1 126 0 0 0 127 0 1 0.00 1 128 0 0 0 129 0 0 0 130 0 2 0.00 2 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 17 10.53 19 2 2 26 7.14 28 3 11 38 22.45 49 4 0 43 0.00 43 5 0 26 0.00 26 6 0 30 0.00 30 7 0 29 0.00 29 8 3 38 7.32 41 9 1 20 4.76 21 10 1 19 5.00 20 11 0 25 0.00 25 12 1 21 4.55 22 13 1 21 4.55 22 14 0 29 0.00 29 15 0 29 0.00 29 16 0 22 0.00 22 17 1 23 4.17 24 18 0 19 0.00 19 19 0 16 0.00 16 20 0 18 0.00 18 21 0 18 0.00 18 22 1 18 5.26 19 23 0 18 0.00 18 24 0 12 0.00 12 25 0 17 0.00 17 26 0 13 0.00 13 27 0 14 0.00 14 28 0 12 0.00 12 29 0 13 0.00 13 30 0 14 0.00 14 31 2 13 13.33 15 32 0 10 0.00 10 33 0 10 0.00 10 34 0 9 0.00 9 35 1 11 8.33 12 36 0 9 0.00 9 37 0 10 0.00 10 38 0 9 0.00 9 39 1 11 8.33 12 40 1 11 8.33 12 41 0 9 0.00 9 42 1 3 25.00 4 43 1 9 10.00 10 44 0 10 0.00 10 45 0 8 0.00 8 46 0 7 0.00 7 47 0 4 0.00 4 48 0 10 0.00 10 49 2 5 28.57 7 50 0 2 0.00 2 51 1 2 33.33 3 52 0 9 0.00 9 53 0 2 0.00 2 54 0 1 0.00 1 55 0 4 0.00 4 56 0 2 0.00 2 57 0 5 0.00 5 58 1 6 14.29 7 59 2 5 28.57 7 60 0 8 0.00 8 61 0 5 0.00 5 62 0 1 0.00 1 63 0 4 0.00 4 64 0 6 0.00 6 65 0 1 0.00 1 66 0 1 0.00 1 67 0 4 0.00 4 68 0 2 0.00 2 69 0 3 0.00 3 70 0 5 0.00 5 71 0 2 0.00 2 72 0 4 0.00 4 73 0 3 0.00 3 74 0 5 0.00 5 75 0 2 0.00 2 76 1 3 25.00 4 77 1 5 16.67 6 78 0 3 0.00 3 79 0 7 0.00 7 80 0 1 0.00 1 81 0 2 0.00 2 82 0 2 0.00 2 83 0 4 0.00 4 84 0 2 0.00 2 85 0 4 0.00 4 86 0 4 0.00 4 87 0 1 0.00 1 88 0 3 0.00 3 89 0 1 0.00 1 90 0 1 0.00 1 91 1 6 14.29 7 92 0 1 0.00 1 93 0 2 0.00 2 94 0 2 0.00 2 95 0 1 0.00 1 96 0 0 0 97 0 3 0.00 3 98 0 1 0.00 1 99 0 3 0.00 3 100 1 2 33.33 3 101 0 1 0.00 1 102 0 2 0.00 2 103 0 3 0.00 3 104 0 0 0 105 0 1 0.00 1 106 0 3 0.00 3 107 0 3 0.00 3 108 1 0 100.00 1 109 0 2 0.00 2 110 0 0 0 111 0 1 0.00 1 112 0 3 0.00 3 113 0 0 0 114 0 0 0 115 0 4 0.00 4 116 0 1 0.00 1 117 0 1 0.00 1 118 0 2 0.00 2 119 0 2 0.00 2 120 0 1 0.00 1 121 0 2 0.00 2 122 0 1 0.00 1 123 0 1 0.00 1 124 0 0 0 125 0 1 0.00 1 126 0 0 0 127 0 1 0.00 1 128 1 1 50.00 2 129 0 0 0 130 0 0 0 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 130 21.21 165 2 20 105 16.00 125 3 43 107 28.67 150 4 20 104 16.13 124 5 31 81 27.68 112 6 18 102 15.00 120 7 26 95 21.49 121 8 25 96 20.66 121 9 30 90 25.00 120 10 18 74 19.57 92 11 30 70 30.00 100 12 24 82 22.64 106 13 28 87 24.35 115 14 21 81 20.59 102 15 22 79 21.78 101 16 20 78 20.41 98 17 21 72 22.58 93 18 18 67 21.18 85 19 25 56 30.86 81 20 10 74 11.90 84 21 22 70 23.91 92 22 11 76 12.64 87 23 20 76 20.83 96 24 11 59 15.71 70 25 17 51 25.00 68 26 11 73 13.10 84 27 21 59 26.25 80 28 10 54 15.62 64 29 16 56 22.22 72 30 6 62 8.82 68 31 16 58 21.62 74 32 11 60 15.49 71 33 20 52 27.78 72 34 5 54 8.47 59 35 16 51 23.88 67 36 10 52 16.13 62 37 14 35 28.57 49 38 5 50 9.09 55 39 13 46 22.03 59 40 8 46 14.81 54 41 15 43 25.86 58 42 5 57 8.06 62 43 20 42 32.26 62 44 7 44 13.73 51 45 10 35 22.22 45 46 4 55 6.78 59 47 14 32 30.43 46 48 10 53 15.87 63 49 14 26 35.00 40 50 6 58 9.38 64 51 13 34 27.66 47 52 8 50 13.79 58 53 8 31 20.51 39 54 10 51 16.39 61 55 8 26 23.53 34 56 7 50 12.28 57 57 5 34 12.82 39 58 8 46 14.81 54 59 6 27 18.18 33 60 5 52 8.77 57 61 7 18 28.00 25 62 6 45 11.76 51 63 5 27 15.62 32 64 8 43 15.69 51 65 5 27 15.62 32 66 3 44 6.38 47 67 6 23 20.69 29 68 6 45 11.76 51 69 7 28 20.00 35 70 5 41 10.87 46 71 6 19 24.00 25 72 4 41 8.89 45 73 4 21 16.00 25 74 4 40 9.09 44 75 4 19 17.39 23 76 3 40 6.98 43 77 5 18 21.74 23 78 5 34 12.82 39 79 4 20 16.67 24 80 3 36 7.69 39 81 6 20 23.08 26 82 3 36 7.69 39 83 3 20 13.04 23 84 7 35 16.67 42 85 1 24 4.00 25 86 4 32 11.11 36 87 3 22 12.00 25 88 4 34 10.53 38 89 3 20 13.04 23 90 4 28 12.50 32 91 2 23 8.00 25 92 4 26 13.33 30 93 3 25 10.71 28 94 3 30 9.09 33 95 2 23 8.00 25 96 2 25 7.41 27 97 2 23 8.00 25 98 2 24 7.69 26 99 2 21 8.70 23 100 4 22 15.38 26 101 2 21 8.70 23 102 5 21 19.23 26 103 1 23 4.17 24 104 2 23 8.00 25 105 1 19 5.00 20 106 2 22 8.33 24 107 3 17 15.00 20 108 3 22 12.00 25 109 2 21 8.70 23 110 2 20 9.09 22 111 1 21 4.55 22 112 2 24 7.69 26 113 0 18 0.00 18 114 1 23 4.17 24 115 1 18 5.26 19 116 2 20 9.09 22 117 1 17 5.56 18 118 1 20 4.76 21 119 0 18 0.00 18 120 0 20 0.00 20 121 1 18 5.26 19 122 2 21 8.70 23 123 0 19 0.00 19 124 1 17 5.56 18 125 0 15 0.00 15 126 0 17 0.00 17 127 0 12 0.00 12 128 2 17 10.53 19 129 0 16 0.00 16 130 0 17 0.00 17 131 0 0 0