/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_11_S20_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11301
Pairs without alignments under any condition
23747
Pairs that did not map uniquely
4952
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
341524
Methylated C's in CpG context
32276
Methylated C's in CHG context
1958
Methylated C's in CHH context
37873
Methylated C's in Unknown context
589
Unmethylated C's in CpG context
15937
Unmethylated C's in CHG context
63203
Unmethylated C's in CHH context
190277
Unmethylated C's in Unknown context
1399
Percentage methylation (CpG context)
66.9%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
16.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5587
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5714
original bottom strand
Deduplication
Alignments analysed
11301
Unique alignments
9318
Duplicates removed
1983
Duplicated alignments were found at 1543 different positions
