CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72 97 42.60 169 2 100 125 44.44 225 3 60 101 37.27 161 4 46 106 30.26 152 5 47 127 27.01 174 6 52 108 32.50 160 7 45 112 28.66 157 8 61 121 33.52 182 9 54 111 32.73 165 10 51 117 30.36 168 11 60 111 35.09 171 12 53 103 33.97 156 13 64 114 35.96 178 14 60 100 37.50 160 15 54 148 26.73 202 16 59 101 36.88 160 17 54 99 35.29 153 18 49 121 28.82 170 19 42 114 26.92 156 20 52 112 31.71 164 21 50 90 35.71 140 22 77 104 42.54 181 23 60 107 35.93 167 24 48 114 29.63 162 25 48 124 27.91 172 26 51 98 34.23 149 27 57 91 38.51 148 28 47 115 29.01 162 29 55 110 33.33 165 30 54 126 30.00 180 31 49 106 31.61 155 32 43 117 26.88 160 33 45 100 31.03 145 34 57 107 34.76 164 35 42 113 27.10 155 36 61 97 38.61 158 37 40 100 28.57 140 38 52 110 32.10 162 39 47 90 34.31 137 40 42 106 28.38 148 41 57 87 39.58 144 42 49 87 36.03 136 43 42 102 29.17 144 44 39 111 26.00 150 45 56 87 39.16 143 46 42 100 29.58 142 47 47 92 33.81 139 48 38 110 25.68 148 49 48 87 35.56 135 50 46 98 31.94 144 51 41 86 32.28 127 52 37 97 27.61 134 53 38 82 31.67 120 54 36 89 28.80 125 55 37 72 33.94 109 56 32 87 26.89 119 57 31 80 27.93 111 58 38 95 28.57 133 59 30 83 26.55 113 60 34 79 30.09 113 61 29 73 28.43 102 62 38 75 33.63 113 63 31 66 31.96 97 64 40 84 32.26 124 65 34 68 33.33 102 66 31 78 28.44 109 67 28 60 31.82 88 68 30 78 27.78 108 69 24 53 31.17 77 70 30 66 31.25 96 71 29 71 29.00 100 72 29 72 28.71 101 73 27 52 34.18 79 74 27 57 32.14 84 75 34 53 39.08 87 76 24 53 31.17 77 77 19 68 21.84 87 78 29 66 30.53 95 79 25 52 32.47 77 80 31 46 40.26 77 81 26 51 33.77 77 82 25 62 28.74 87 83 23 57 28.75 80 84 26 50 34.21 76 85 20 45 30.77 65 86 18 59 23.38 77 87 18 40 31.03 58 88 21 44 32.31 65 89 15 42 26.32 57 90 12 52 18.75 64 91 19 40 32.20 59 92 13 58 18.31 71 93 22 43 33.85 65 94 10 45 18.18 55 95 14 39 26.42 53 96 20 31 39.22 51 97 19 37 33.93 56 98 17 29 36.96 46 99 17 31 35.42 48 100 11 26 29.73 37 101 13 27 32.50 40 102 17 27 38.64 44 103 19 31 38.00 50 104 13 28 31.71 41 105 5 28 15.15 33 106 13 29 30.95 42 107 10 39 20.41 49 108 6 19 24.00 25 109 18 21 46.15 39 110 8 32 20.00 40 111 5 28 15.15 33 112 9 35 20.45 44 113 12 27 30.77 39 114 8 34 19.05 42 115 16 30 34.78 46 116 11 24 31.43 35 117 6 26 18.75 32 118 9 28 24.32 37 119 16 28 36.36 44 120 9 21 30.00 30 121 5 18 21.74 23 122 11 19 36.67 30 123 9 16 36.00 25 124 13 23 36.11 36 125 5 18 21.74 23 126 14 20 41.18 34 127 9 27 25.00 36 128 6 22 21.43 28 129 6 12 33.33 18 130 5 18 21.74 23 131 6 9 40.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 73 215 25.35 288 2 13 225 5.46 238 3 10 219 4.37 229 4 17 186 8.37 203 5 17 235 6.75 252 6 21 199 9.55 220 7 16 185 7.96 201 8 14 184 7.07 198 9 7 223 3.04 230 10 11 233 4.51 244 11 9 212 4.07 221 12 9 224 3.86 233 13 10 217 4.41 227 14 9 224 3.86 233 15 15 232 6.07 247 16 9 204 4.23 213 17 9 226 3.83 235 18 11 187 5.56 198 19 7 195 3.47 202 20 8 265 2.93 273 21 8 254 3.05 262 22 6 252 2.33 258 23 7 208 3.26 215 24 8 219 3.52 227 25 10 221 4.33 231 26 14 228 5.79 242 27 8 215 3.59 223 28 10 206 4.63 216 29 6 210 2.78 216 30 6 240 2.44 246 31 7 208 3.26 215 32 11 187 5.56 198 33 8 239 3.24 247 34 8 213 3.62 221 35 8 200 3.85 208 36 10 187 5.08 197 37 10 222 4.31 232 38 9 176 4.86 185 39 5 207 2.36 212 40 5 197 2.48 202 41 5 190 2.56 195 42 9 205 4.21 214 43 7 178 3.78 185 44 9 191 4.50 200 45 11 175 5.91 186 46 7 180 3.74 187 47 6 197 2.96 203 48 6 172 3.37 178 49 5 183 2.66 188 50 9 158 5.39 167 51 3 162 1.82 165 52 6 172 3.37 178 53 8 174 4.40 182 54 4 152 2.56 156 55 3 182 1.62 185 56 5 150 3.23 155 57 7 162 4.14 169 58 4 151 2.58 155 59 4 154 2.53 158 60 8 156 4.88 164 61 5 158 3.07 163 62 2 122 1.61 124 63 5 151 3.21 156 64 8 117 6.40 125 65 3 140 2.10 143 66 4 127 3.05 131 67 11 124 8.15 135 68 7 120 5.51 127 69 5 115 4.17 120 70 2 128 1.54 130 71 5 127 3.79 132 72 2 116 1.69 118 73 6 114 5.00 120 74 2 109 1.80 111 75 3 107 2.73 110 76 2 110 1.79 112 77 4 104 3.70 108 78 3 103 2.83 106 79 3 104 2.80 107 80 2 102 1.92 104 81 5 90 5.26 95 82 3 103 2.83 106 83 2 101 1.94 103 84 7 91 7.14 98 85 1 91 1.09 92 86 0 74 0.00 74 87 2 90 2.17 92 88 2 96 2.04 98 89 2 79 2.47 81 90 3 88 3.30 91 91 4 84 4.55 88 92 2 66 2.94 68 93 4 64 5.88 68 94 3 84 3.45 87 95 3 77 3.75 80 96 2 68 2.86 70 97 2 68 2.86 70 98 2 75 2.60 77 99 4 65 5.80 69 100 0 65 0.00 65 101 1 51 1.92 52 102 3 65 4.41 68 103 2 53 3.64 55 104 5 69 6.76 74 105 0 54 0.00 54 106 2 53 3.64 55 107 5 51 8.93 56 108 0 45 0.00 45 109 2 47 4.08 49 110 2 54 3.57 56 111 2 37 5.13 39 112 2 49 3.92 51 113 1 55 1.79 56 114 2 44 4.35 46 115 0 49 0.00 49 116 3 42 6.67 45 117 3 49 5.77 52 118 1 38 2.56 39 119 1 41 2.38 42 120 0 49 0.00 49 121 3 39 7.14 42 122 3 28 9.68 31 123 4 36 10.00 40 124 1 33 2.94 34 125 0 39 0.00 39 126 3 30 9.09 33 127 1 25 3.85 26 128 6 27 18.18 33 129 3 35 7.89 38 130 3 31 8.82 34 131 0 22 0.00 22 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 422 610 40.89 1032 2 321 658 32.79 979 3 362 634 36.35 996 4 371 637 36.81 1008 5 340 661 33.97 1001 6 374 628 37.33 1002 7 374 617 37.74 991 8 344 637 35.07 981 9 388 575 40.29 963 10 395 602 39.62 997 11 387 608 38.89 995 12 385 623 38.19 1008 13 408 655 38.38 1063 14 400 629 38.87 1029 15 384 638 37.57 1022 16 402 688 36.88 1090 17 388 611 38.84 999 18 376 614 37.98 990 19 423 666 38.84 1089 20 369 662 35.79 1031 21 409 639 39.03 1048 22 421 665 38.77 1086 23 377 669 36.04 1046 24 415 657 38.71 1072 25 434 671 39.28 1105 26 388 675 36.50 1063 27 381 687 35.67 1068 28 399 671 37.29 1070 29 404 636 38.85 1040 30 404 635 38.88 1039 31 418 629 39.92 1047 32 390 677 36.55 1067 33 387 670 36.61 1057 34 415 618 40.17 1033 35 360 643 35.89 1003 36 389 660 37.08 1049 37 387 639 37.72 1026 38 350 604 36.69 954 39 360 613 37.00 973 40 372 596 38.43 968 41 344 608 36.13 952 42 350 570 38.04 920 43 353 595 37.24 948 44 337 565 37.36 902 45 335 597 35.94 932 46 324 555 36.86 879 47 306 556 35.50 862 48 339 570 37.29 909 49 322 533 37.66 855 50 315 527 37.41 842 51 304 523 36.76 827 52 330 516 39.01 846 53 287 495 36.70 782 54 308 495 38.36 803 55 293 485 37.66 778 56 285 525 35.19 810 57 282 476 37.20 758 58 281 475 37.17 756 59 271 450 37.59 721 60 284 457 38.33 741 61 251 462 35.20 713 62 263 443 37.25 706 63 239 436 35.41 675 64 265 435 37.86 700 65 243 450 35.06 693 66 249 408 37.90 657 67 223 393 36.20 616 68 258 395 39.51 653 69 219 356 38.09 575 70 224 365 38.03 589 71 219 340 39.18 559 72 241 379 38.87 620 73 204 335 37.85 539 74 224 339 39.79 563 75 184 373 33.03 557 76 197 371 34.68 568 77 178 319 35.81 497 78 196 333 37.05 529 79 172 335 33.93 507 80 186 324 36.47 510 81 147 302 32.74 449 82 190 304 38.46 494 83 166 279 37.30 445 84 172 291 37.15 463 85 153 283 35.09 436 86 164 323 33.68 487 87 142 304 31.84 446 88 152 283 34.94 435 89 143 276 34.13 419 90 155 253 37.99 408 91 130 253 33.94 383 92 130 244 34.76 374 93 127 234 35.18 361 94 144 222 39.34 366 95 127 228 35.77 355 96 134 230 36.81 364 97 113 229 33.04 342 98 122 221 35.57 343 99 111 206 35.02 317 100 105 218 32.51 323 101 112 209 34.89 321 102 99 213 31.73 312 103 106 204 34.19 310 104 110 198 35.71 308 105 96 168 36.36 264 106 86 187 31.50 273 107 97 197 32.99 294 108 89 202 30.58 291 109 92 194 32.17 286 110 87 168 34.12 255 111 90 168 34.88 258 112 84 148 36.21 232 113 88 155 36.21 243 114 78 124 38.61 202 115 90 145 38.30 235 116 76 135 36.02 211 117 71 156 31.28 227 118 64 149 30.05 213 119 74 158 31.90 232 120 56 114 32.94 170 121 74 145 33.79 219 122 60 118 33.71 178 123 60 120 33.33 180 124 57 123 31.67 180 125 59 134 30.57 193 126 53 118 30.99 171 127 61 122 33.33 183 128 46 117 28.22 163 129 51 96 34.69 147 130 36 95 27.48 131 131 31 86 26.50 117 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 21 25.00 28 2 13 20 39.39 33 3 29 9 76.32 38 4 1 21 4.55 22 5 5 21 19.23 26 6 8 17 32.00 25 7 2 14 12.50 16 8 5 23 17.86 28 9 3 15 16.67 18 10 4 19 17.39 23 11 4 13 23.53 17 12 4 13 23.53 17 13 4 15 21.05 19 14 2 14 12.50 16 15 4 19 17.39 23 16 1 13 7.14 14 17 4 12 25.00 16 18 2 16 11.11 18 19 6 13 31.58 19 20 2 8 20.00 10 21 3 9 25.00 12 22 0 17 0.00 17 23 3 9 25.00 12 24 4 10 28.57 14 25 3 6 33.33 9 26 2 15 11.76 17 27 4 5 44.44 9 28 5 13 27.78 18 29 4 12 25.00 16 30 5 4 55.56 9 31 1 10 9.09 11 32 2 9 18.18 11 33 2 2 50.00 4 34 4 11 26.67 15 35 2 4 33.33 6 36 0 8 0.00 8 37 1 4 20.00 5 38 3 5 37.50 8 39 3 7 30.00 10 40 5 6 45.45 11 41 3 5 37.50 8 42 1 9 10.00 10 43 1 13 7.14 14 44 3 5 37.50 8 45 0 4 0.00 4 46 5 4 55.56 9 47 2 4 33.33 6 48 2 7 22.22 9 49 2 6 25.00 8 50 3 2 60.00 5 51 0 2 0.00 2 52 0 7 0.00 7 53 2 7 22.22 9 54 0 4 0.00 4 55 1 6 14.29 7 56 1 3 25.00 4 57 1 4 20.00 5 58 2 6 25.00 8 59 1 3 25.00 4 60 2 3 40.00 5 61 1 7 12.50 8 62 1 4 20.00 5 63 1 4 20.00 5 64 1 2 33.33 3 65 0 2 0.00 2 66 0 4 0.00 4 67 0 1 0.00 1 68 1 2 33.33 3 69 1 4 20.00 5 70 0 2 0.00 2 71 1 5 16.67 6 72 1 3 25.00 4 73 0 3 0.00 3 74 0 4 0.00 4 75 0 5 0.00 5 76 1 3 25.00 4 77 0 4 0.00 4 78 0 1 0.00 1 79 1 4 20.00 5 80 0 4 0.00 4 81 0 1 0.00 1 82 0 2 0.00 2 83 1 0 100.00 1 84 0 2 0.00 2 85 0 2 0.00 2 86 0 3 0.00 3 87 0 0 0 88 0 3 0.00 3 89 1 0 100.00 1 90 0 0 0 91 0 0 0 92 0 2 0.00 2 93 0 2 0.00 2 94 0 0 0 95 0 0 0 96 0 0 0 97 0 4 0.00 4 98 0 1 0.00 1 99 1 1 50.00 2 100 0 0 0 101 0 0 0 102 0 0 0 103 0 1 0.00 1 104 0 2 0.00 2 105 0 2 0.00 2 106 0 2 0.00 2 107 0 0 0 108 0 0 0 109 0 0 0 110 0 1 0.00 1 111 0 0 0 112 0 1 0.00 1 113 0 0 0 114 1 1 50.00 2 115 0 2 0.00 2 116 1 2 33.33 3 117 0 0 0 118 1 0 100.00 1 119 0 0 0 120 2 1 66.67 3 121 0 0 0 122 1 1 50.00 2 123 2 0 100.00 2 124 0 0 0 125 0 2 0.00 2 126 0 0 0 127 2 1 66.67 3 128 0 0 0 129 0 1 0.00 1 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 30 6.25 32 2 8 37 17.78 45 3 11 34 24.44 45 4 1 63 1.56 64 5 1 26 3.70 27 6 2 31 6.06 33 7 0 27 0.00 27 8 7 44 13.73 51 9 0 32 0.00 32 10 1 25 3.85 26 11 0 30 0.00 30 12 1 26 3.70 27 13 0 23 0.00 23 14 1 26 3.70 27 15 0 26 0.00 26 16 1 21 4.55 22 17 1 33 2.94 34 18 0 23 0.00 23 19 0 20 0.00 20 20 1 20 4.76 21 21 1 17 5.56 18 22 1 24 4.00 25 23 1 21 4.55 22 24 0 15 0.00 15 25 0 8 0.00 8 26 0 17 0.00 17 27 1 16 5.88 17 28 0 10 0.00 10 29 0 10 0.00 10 30 2 13 13.33 15 31 0 11 0.00 11 32 0 9 0.00 9 33 1 11 8.33 12 34 0 11 0.00 11 35 1 12 7.69 13 36 1 12 7.69 13 37 2 11 15.38 13 38 0 9 0.00 9 39 0 8 0.00 8 40 0 9 0.00 9 41 1 7 12.50 8 42 0 7 0.00 7 43 1 12 7.69 13 44 0 11 0.00 11 45 0 4 0.00 4 46 0 8 0.00 8 47 0 13 0.00 13 48 0 5 0.00 5 49 0 7 0.00 7 50 1 5 16.67 6 51 0 3 0.00 3 52 0 5 0.00 5 53 0 9 0.00 9 54 1 2 33.33 3 55 0 6 0.00 6 56 0 6 0.00 6 57 0 5 0.00 5 58 0 6 0.00 6 59 1 6 14.29 7 60 0 3 0.00 3 61 1 5 16.67 6 62 0 6 0.00 6 63 0 2 0.00 2 64 0 3 0.00 3 65 0 8 0.00 8 66 0 1 0.00 1 67 0 5 0.00 5 68 0 3 0.00 3 69 0 4 0.00 4 70 0 2 0.00 2 71 0 4 0.00 4 72 1 5 16.67 6 73 1 4 20.00 5 74 0 4 0.00 4 75 0 3 0.00 3 76 0 5 0.00 5 77 0 3 0.00 3 78 1 5 16.67 6 79 0 5 0.00 5 80 1 4 20.00 5 81 0 2 0.00 2 82 0 1 0.00 1 83 1 5 16.67 6 84 1 1 50.00 2 85 0 1 0.00 1 86 0 6 0.00 6 87 0 5 0.00 5 88 1 4 20.00 5 89 0 1 0.00 1 90 0 1 0.00 1 91 0 4 0.00 4 92 0 3 0.00 3 93 0 2 0.00 2 94 0 2 0.00 2 95 0 0 0 96 0 2 0.00 2 97 0 2 0.00 2 98 0 3 0.00 3 99 0 0 0 100 0 1 0.00 1 101 0 0 0 102 0 1 0.00 1 103 0 0 0 104 0 2 0.00 2 105 0 4 0.00 4 106 0 0 0 107 0 1 0.00 1 108 0 0 0 109 0 1 0.00 1 110 0 3 0.00 3 111 0 1 0.00 1 112 0 1 0.00 1 113 0 1 0.00 1 114 1 2 33.33 3 115 0 4 0.00 4 116 1 1 50.00 2 117 0 3 0.00 3 118 0 0 0 119 0 2 0.00 2 120 0 1 0.00 1 121 0 1 0.00 1 122 0 0 0 123 0 0 0 124 1 2 33.33 3 125 0 2 0.00 2 126 1 0 100.00 1 127 0 0 0 128 0 0 0 129 0 3 0.00 3 130 1 0 100.00 1 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 93 137 40.43 230 2 57 102 35.85 159 3 83 115 41.92 198 4 53 124 29.94 177 5 77 90 46.11 167 6 47 88 34.81 135 7 82 79 50.93 161 8 51 105 32.69 156 9 79 101 43.89 180 10 65 111 36.93 176 11 80 78 50.63 158 12 65 83 43.92 148 13 85 92 48.02 177 14 54 96 36.00 150 15 82 90 47.67 172 16 55 104 34.59 159 17 80 90 47.06 170 18 38 82 31.67 120 19 81 68 54.36 149 20 36 63 36.36 99 21 82 75 52.23 157 22 43 73 37.07 116 23 72 67 51.80 139 24 38 70 35.19 108 25 75 71 51.37 146 26 38 67 36.19 105 27 74 66 52.86 140 28 41 58 41.41 99 29 69 47 59.48 116 30 40 68 37.04 108 31 81 56 59.12 137 32 36 47 43.37 83 33 78 43 64.46 121 34 36 56 39.13 92 35 69 51 57.50 120 36 39 51 43.33 90 37 70 44 61.40 114 38 31 53 36.90 84 39 71 45 61.21 116 40 36 48 42.86 84 41 57 45 55.88 102 42 43 42 50.59 85 43 59 45 56.73 104 44 37 44 45.68 81 45 55 40 57.89 95 46 41 35 53.95 76 47 57 37 60.64 94 48 34 38 47.22 72 49 52 39 57.14 91 50 34 46 42.50 80 51 57 32 64.04 89 52 27 45 37.50 72 53 43 38 53.09 81 54 25 42 37.31 67 55 49 30 62.03 79 56 30 34 46.88 64 57 54 28 65.85 82 58 26 35 42.62 61 59 47 27 63.51 74 60 24 30 44.44 54 61 47 36 56.63 83 62 30 35 46.15 65 63 43 34 55.84 77 64 20 29 40.82 49 65 41 28 59.42 69 66 28 29 49.12 57 67 38 31 55.07 69 68 22 26 45.83 48 69 47 27 63.51 74 70 21 26 44.68 47 71 37 34 52.11 71 72 22 23 48.89 45 73 36 21 63.16 57 74 21 21 50.00 42 75 35 25 58.33 60 76 21 26 44.68 47 77 36 20 64.29 56 78 23 26 46.94 49 79 32 25 56.14 57 80 19 26 42.22 45 81 32 31 50.79 63 82 16 23 41.03 39 83 28 28 50.00 56 84 12 26 31.58 38 85 30 22 57.69 52 86 22 22 50.00 44 87 31 24 56.36 55 88 15 23 39.47 38 89 26 23 53.06 49 90 18 25 41.86 43 91 23 15 60.53 38 92 17 25 40.48 42 93 24 17 58.54 41 94 16 21 43.24 37 95 20 15 57.14 35 96 18 19 48.65 37 97 23 19 54.76 42 98 20 19 51.28 39 99 20 19 51.28 39 100 13 23 36.11 36 101 20 25 44.44 45 102 19 19 50.00 38 103 21 19 52.50 40 104 17 20 45.95 37 105 18 15 54.55 33 106 18 21 46.15 39 107 19 11 63.33 30 108 15 21 41.67 36 109 18 14 56.25 32 110 15 21 41.67 36 111 12 15 44.44 27 112 10 18 35.71 28 113 12 12 50.00 24 114 10 18 35.71 28 115 9 10 47.37 19 116 12 19 38.71 31 117 13 13 50.00 26 118 9 18 33.33 27 119 9 13 40.91 22 120 10 22 31.25 32 121 10 10 50.00 20 122 10 21 32.26 31 123 7 9 43.75 16 124 6 22 21.43 28 125 8 12 40.00 20 126 6 19 24.00 25 127 9 11 45.00 20 128 10 17 37.04 27 129 5 9 35.71 14 130 9 20 31.03 29 131 6 1 85.71 7