/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_08_S19_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
9279
Pairs without alignments under any condition
25157
Pairs that did not map uniquely
5564
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
273135
Methylated C's in CpG context
10316
Methylated C's in CHG context
1813
Methylated C's in CHH context
67941
Methylated C's in Unknown context
825
Unmethylated C's in CpG context
21844
Unmethylated C's in CHG context
42822
Unmethylated C's in CHH context
128399
Unmethylated C's in Unknown context
1183
Percentage methylation (CpG context)
32.1%
Percentage methylation (CHG context)
4.1%
Percentage methylation (CHH context)
34.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4532
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4747
original bottom strand
Deduplication
Alignments analysed
9279
Unique alignments
7956
Duplicates removed
1323
Duplicated alignments were found at 1019 different positions
