CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 206 92 69.13 298 2 242 107 69.34 349 3 205 90 69.49 295 4 234 84 73.58 318 5 211 89 70.33 300 6 198 89 68.99 287 7 194 86 69.29 280 8 202 94 68.24 296 9 190 85 69.09 275 10 229 81 73.87 310 11 209 79 72.57 288 12 204 84 70.83 288 13 238 88 73.01 326 14 227 90 71.61 317 15 221 77 74.16 298 16 211 94 69.18 305 17 206 93 68.90 299 18 201 82 71.02 283 19 215 75 74.14 290 20 197 79 71.38 276 21 210 74 73.94 284 22 239 77 75.63 316 23 223 98 69.47 321 24 224 93 70.66 317 25 219 94 69.97 313 26 204 86 70.34 290 27 224 85 72.49 309 28 203 63 76.32 266 29 201 82 71.02 283 30 228 93 71.03 321 31 194 78 71.32 272 32 203 79 71.99 282 33 200 91 68.73 291 34 197 73 72.96 270 35 192 69 73.56 261 36 205 62 76.78 267 37 195 85 69.64 280 38 205 81 71.68 286 39 195 73 72.76 268 40 220 81 73.09 301 41 180 63 74.07 243 42 205 68 75.09 273 43 187 69 73.05 256 44 179 74 70.75 253 45 194 80 70.80 274 46 197 55 78.17 252 47 168 63 72.73 231 48 169 71 70.42 240 49 160 59 73.06 219 50 183 67 73.20 250 51 187 68 73.33 255 52 169 74 69.55 243 53 152 61 71.36 213 54 164 53 75.58 217 55 156 61 71.89 217 56 141 56 71.57 197 57 185 60 75.51 245 58 145 65 69.05 210 59 167 63 72.61 230 60 157 58 73.02 215 61 121 52 69.94 173 62 136 60 69.39 196 63 130 48 73.03 178 64 145 54 72.86 199 65 133 59 69.27 192 66 116 46 71.60 162 67 112 48 70.00 160 68 102 51 66.67 153 69 119 45 72.56 164 70 113 43 72.44 156 71 116 48 70.73 164 72 93 59 61.18 152 73 111 48 69.81 159 74 90 41 68.70 131 75 107 48 69.03 155 76 117 28 80.69 145 77 102 37 73.38 139 78 91 44 67.41 135 79 80 47 62.99 127 80 85 36 70.25 121 81 94 31 75.20 125 82 76 36 67.86 112 83 76 34 69.09 110 84 74 28 72.55 102 85 72 34 67.92 106 86 87 37 70.16 124 87 73 36 66.97 109 88 63 31 67.02 94 89 85 32 72.65 117 90 72 23 75.79 95 91 82 32 71.93 114 92 63 28 69.23 91 93 78 34 69.64 112 94 66 24 73.33 90 95 73 24 75.26 97 96 56 27 67.47 83 97 59 17 77.63 76 98 63 21 75.00 84 99 60 24 71.43 84 100 56 27 67.47 83 101 53 21 71.62 74 102 46 18 71.88 64 103 34 15 69.39 49 104 41 25 62.12 66 105 48 18 72.73 66 106 41 19 68.33 60 107 30 25 54.55 55 108 34 15 69.39 49 109 39 25 60.94 64 110 44 22 66.67 66 111 29 12 70.73 41 112 43 18 70.49 61 113 42 15 73.68 57 114 42 17 71.19 59 115 29 16 64.44 45 116 31 14 68.89 45 117 40 18 68.97 58 118 26 12 68.42 38 119 39 9 81.25 48 120 22 17 56.41 39 121 28 13 68.29 41 122 24 15 61.54 39 123 30 11 73.17 41 124 20 13 60.61 33 125 16 10 61.54 26 126 28 6 82.35 34 127 28 11 71.79 39 128 22 17 56.41 39 129 20 12 62.50 32 130 21 9 70.00 30 131 9 5 64.29 14 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 64 377 14.51 441 2 17 333 4.86 350 3 21 383 5.20 404 4 25 406 5.80 431 5 19 372 4.86 391 6 22 393 5.30 415 7 9 381 2.31 390 8 12 412 2.83 424 9 18 379 4.53 397 10 18 380 4.52 398 11 17 413 3.95 430 12 11 427 2.51 438 13 20 408 4.67 428 14 16 411 3.75 427 15 15 375 3.85 390 16 8 392 2.00 400 17 14 381 3.54 395 18 8 386 2.03 394 19 10 374 2.60 384 20 18 408 4.23 426 21 11 400 2.68 411 22 11 394 2.72 405 23 15 408 3.55 423 24 16 432 3.57 448 25 13 342 3.66 355 26 20 370 5.13 390 27 15 385 3.75 400 28 14 386 3.50 400 29 17 368 4.42 385 30 6 382 1.55 388 31 13 385 3.27 398 32 11 362 2.95 373 33 7 349 1.97 356 34 10 363 2.68 373 35 10 324 2.99 334 36 12 366 3.17 378 37 5 339 1.45 344 38 10 330 2.94 340 39 14 362 3.72 376 40 14 334 4.02 348 41 9 355 2.47 364 42 14 320 4.19 334 43 14 335 4.01 349 44 11 297 3.57 308 45 7 348 1.97 355 46 12 316 3.66 328 47 12 326 3.55 338 48 5 296 1.66 301 49 7 303 2.26 310 50 12 308 3.75 320 51 9 280 3.11 289 52 9 297 2.94 306 53 7 260 2.62 267 54 7 278 2.46 285 55 8 264 2.94 272 56 7 255 2.67 262 57 7 233 2.92 240 58 5 258 1.90 263 59 9 275 3.17 284 60 5 255 1.92 260 61 10 248 3.88 258 62 7 215 3.15 222 63 5 241 2.03 246 64 8 253 3.07 261 65 4 218 1.80 222 66 12 236 4.84 248 67 4 231 1.70 235 68 8 195 3.94 203 69 9 216 4.00 225 70 4 186 2.11 190 71 8 194 3.96 202 72 8 198 3.88 206 73 4 172 2.27 176 74 8 202 3.81 210 75 5 192 2.54 197 76 5 155 3.12 160 77 5 160 3.03 165 78 4 180 2.17 184 79 3 168 1.75 171 80 5 153 3.16 158 81 2 157 1.26 159 82 6 145 3.97 151 83 4 134 2.90 138 84 0 140 0.00 140 85 4 141 2.76 145 86 3 122 2.40 125 87 5 108 4.42 113 88 4 139 2.80 143 89 4 119 3.25 123 90 1 128 0.78 129 91 4 114 3.39 118 92 3 118 2.48 121 93 3 122 2.40 125 94 5 129 3.73 134 95 1 111 0.89 112 96 2 106 1.85 108 97 8 92 8.00 100 98 2 109 1.80 111 99 4 98 3.92 102 100 5 93 5.10 98 101 5 98 4.85 103 102 2 73 2.67 75 103 3 73 3.95 76 104 3 87 3.33 90 105 1 89 1.11 90 106 3 72 4.00 75 107 0 72 0.00 72 108 2 87 2.25 89 109 1 77 1.28 78 110 1 63 1.56 64 111 0 61 0.00 61 112 1 54 1.82 55 113 4 67 5.63 71 114 0 67 0.00 67 115 1 70 1.41 71 116 3 70 4.11 73 117 0 57 0.00 57 118 0 62 0.00 62 119 0 65 0.00 65 120 2 55 3.51 57 121 0 62 0.00 62 122 1 62 1.59 63 123 2 53 3.64 55 124 0 46 0.00 46 125 1 57 1.72 58 126 0 53 0.00 53 127 1 46 2.13 47 128 1 50 1.96 51 129 2 51 3.77 53 130 1 46 2.13 47 131 3 27 10.00 30 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 260 1013 20.42 1273 2 245 1056 18.83 1301 3 259 1038 19.97 1297 4 273 977 21.84 1250 5 265 1027 20.51 1292 6 240 968 19.87 1208 7 239 988 19.48 1227 8 248 972 20.33 1220 9 264 982 21.19 1246 10 283 969 22.60 1252 11 258 1042 19.85 1300 12 275 1037 20.96 1312 13 275 1074 20.39 1349 14 296 1030 22.32 1326 15 238 1016 18.98 1254 16 242 1037 18.92 1279 17 245 1071 18.62 1316 18 290 1106 20.77 1396 19 303 1093 21.70 1396 20 255 1106 18.74 1361 21 256 1111 18.73 1367 22 240 1130 17.52 1370 23 282 1081 20.69 1363 24 283 1077 20.81 1360 25 236 1100 17.66 1336 26 231 1132 16.95 1363 27 236 1069 18.08 1305 28 268 1091 19.72 1359 29 263 1001 20.81 1264 30 223 1100 16.86 1323 31 242 1012 19.30 1254 32 237 1030 18.71 1267 33 235 1048 18.32 1283 34 209 1051 16.59 1260 35 210 1036 16.85 1246 36 201 1003 16.69 1204 37 210 1034 16.88 1244 38 201 1006 16.65 1207 39 198 967 17.00 1165 40 184 986 15.73 1170 41 177 923 16.09 1100 42 168 998 14.41 1166 43 200 893 18.30 1093 44 175 877 16.63 1052 45 152 876 14.79 1028 46 146 899 13.97 1045 47 172 862 16.63 1034 48 166 896 15.63 1062 49 164 852 16.14 1016 50 130 860 13.13 990 51 124 824 13.08 948 52 148 803 15.56 951 53 160 764 17.32 924 54 128 772 14.22 900 55 143 781 15.48 924 56 119 772 13.36 891 57 112 761 12.83 873 58 142 751 15.90 893 59 112 728 13.33 840 60 102 705 12.64 807 61 100 647 13.39 747 62 110 694 13.68 804 63 99 723 12.04 822 64 105 651 13.89 756 65 95 650 12.75 745 66 80 620 11.43 700 67 93 596 13.50 689 68 104 553 15.83 657 69 81 559 12.66 640 70 99 558 15.07 657 71 75 583 11.40 658 72 70 542 11.44 612 73 73 550 11.72 623 74 71 554 11.36 625 75 72 516 12.24 588 76 66 516 11.34 582 77 57 499 10.25 556 78 80 553 12.64 633 79 60 498 10.75 558 80 54 491 9.91 545 81 57 480 10.61 537 82 67 485 12.14 552 83 56 465 10.75 521 84 59 413 12.50 472 85 53 428 11.02 481 86 54 408 11.69 462 87 62 412 13.08 474 88 52 379 12.06 431 89 51 371 12.09 422 90 56 356 13.59 412 91 48 376 11.32 424 92 47 376 11.11 423 93 42 349 10.74 391 94 53 332 13.77 385 95 45 316 12.47 361 96 39 329 10.60 368 97 34 361 8.61 395 98 35 314 10.03 349 99 37 299 11.01 336 100 33 311 9.59 344 101 30 286 9.49 316 102 26 300 7.98 326 103 36 287 11.15 323 104 30 303 9.01 333 105 26 277 8.58 303 106 28 281 9.06 309 107 26 290 8.23 316 108 31 203 13.25 234 109 26 262 9.03 288 110 19 229 7.66 248 111 28 243 10.33 271 112 28 242 10.37 270 113 25 213 10.50 238 114 25 218 10.29 243 115 25 228 9.88 253 116 23 219 9.50 242 117 19 213 8.19 232 118 22 196 10.09 218 119 24 208 10.34 232 120 21 191 9.91 212 121 15 171 8.06 186 122 23 172 11.79 195 123 26 176 12.87 202 124 20 181 9.95 201 125 15 190 7.32 205 126 15 164 8.38 179 127 21 150 12.28 171 128 18 192 8.57 210 129 17 155 9.88 172 130 9 152 5.59 161 131 7 97 6.73 104 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 15 11 57.69 26 2 22 10 68.75 32 3 27 10 72.97 37 4 16 11 59.26 27 5 22 5 81.48 27 6 20 9 68.97 29 7 15 15 50.00 30 8 18 13 58.06 31 9 20 8 71.43 28 10 22 9 70.97 31 11 21 11 65.62 32 12 18 7 72.00 25 13 22 9 70.97 31 14 18 11 62.07 29 15 9 11 45.00 20 16 15 8 65.22 23 17 17 7 70.83 24 18 11 7 61.11 18 19 12 6 66.67 18 20 13 8 61.90 21 21 15 6 71.43 21 22 9 6 60.00 15 23 5 6 45.45 11 24 13 5 72.22 18 25 14 5 73.68 19 26 9 4 69.23 13 27 7 4 63.64 11 28 7 7 50.00 14 29 16 2 88.89 18 30 10 2 83.33 12 31 8 5 61.54 13 32 13 5 72.22 18 33 7 7 50.00 14 34 7 3 70.00 10 35 9 6 60.00 15 36 8 3 72.73 11 37 5 4 55.56 9 38 10 2 83.33 12 39 4 2 66.67 6 40 8 1 88.89 9 41 8 2 80.00 10 42 10 7 58.82 17 43 5 5 50.00 10 44 10 3 76.92 13 45 9 4 69.23 13 46 8 1 88.89 9 47 8 1 88.89 9 48 5 2 71.43 7 49 4 3 57.14 7 50 7 3 70.00 10 51 3 4 42.86 7 52 2 3 40.00 5 53 8 3 72.73 11 54 2 1 66.67 3 55 3 4 42.86 7 56 7 2 77.78 9 57 3 1 75.00 4 58 6 0 100.00 6 59 2 4 33.33 6 60 8 3 72.73 11 61 1 3 25.00 4 62 4 1 80.00 5 63 2 0 100.00 2 64 6 0 100.00 6 65 1 1 50.00 2 66 0 0 0 67 2 4 33.33 6 68 1 1 50.00 2 69 2 1 66.67 3 70 3 1 75.00 4 71 4 1 80.00 5 72 4 1 80.00 5 73 4 3 57.14 7 74 2 2 50.00 4 75 3 2 60.00 5 76 3 2 60.00 5 77 1 0 100.00 1 78 1 2 33.33 3 79 3 1 75.00 4 80 8 2 80.00 10 81 2 1 66.67 3 82 4 2 66.67 6 83 4 0 100.00 4 84 2 1 66.67 3 85 3 1 75.00 4 86 2 2 50.00 4 87 2 1 66.67 3 88 1 2 33.33 3 89 2 0 100.00 2 90 2 2 50.00 4 91 5 1 83.33 6 92 5 1 83.33 6 93 2 0 100.00 2 94 1 0 100.00 1 95 2 0 100.00 2 96 0 0 0 97 2 1 66.67 3 98 1 2 33.33 3 99 2 2 50.00 4 100 1 3 25.00 4 101 0 2 0.00 2 102 1 0 100.00 1 103 2 0 100.00 2 104 2 0 100.00 2 105 1 1 50.00 2 106 1 0 100.00 1 107 0 0 0 108 1 0 100.00 1 109 1 0 100.00 1 110 1 1 50.00 2 111 3 0 100.00 3 112 1 0 100.00 1 113 0 0 0 114 1 0 100.00 1 115 1 0 100.00 1 116 0 0 0 117 1 1 50.00 2 118 0 2 0.00 2 119 0 1 0.00 1 120 2 0 100.00 2 121 0 1 0.00 1 122 0 0 0 123 0 0 0 124 1 0 100.00 1 125 1 0 100.00 1 126 0 0 0 127 1 0 100.00 1 128 1 0 100.00 1 129 1 1 50.00 2 130 0 1 0.00 1 131 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 41 4.65 43 2 3 48 5.88 51 3 7 50 12.28 57 4 3 42 6.67 45 5 0 33 0.00 33 6 0 32 0.00 32 7 3 42 6.67 45 8 1 54 1.82 55 9 3 26 10.34 29 10 0 29 0.00 29 11 2 43 4.44 45 12 3 53 5.36 56 13 0 34 0.00 34 14 1 47 2.08 48 15 1 31 3.12 32 16 0 26 0.00 26 17 0 35 0.00 35 18 0 33 0.00 33 19 2 32 5.88 34 20 1 22 4.35 23 21 1 26 3.70 27 22 0 22 0.00 22 23 2 26 7.14 28 24 1 23 4.17 24 25 0 18 0.00 18 26 0 22 0.00 22 27 0 13 0.00 13 28 0 22 0.00 22 29 0 13 0.00 13 30 0 23 0.00 23 31 2 14 12.50 16 32 0 22 0.00 22 33 0 15 0.00 15 34 1 15 6.25 16 35 0 14 0.00 14 36 0 14 0.00 14 37 0 18 0.00 18 38 0 11 0.00 11 39 1 11 8.33 12 40 0 11 0.00 11 41 1 6 14.29 7 42 1 11 8.33 12 43 0 16 0.00 16 44 0 5 0.00 5 45 0 9 0.00 9 46 0 12 0.00 12 47 0 12 0.00 12 48 0 7 0.00 7 49 0 12 0.00 12 50 0 12 0.00 12 51 1 11 8.33 12 52 0 4 0.00 4 53 0 6 0.00 6 54 2 11 15.38 13 55 0 3 0.00 3 56 1 6 14.29 7 57 0 7 0.00 7 58 0 11 0.00 11 59 0 9 0.00 9 60 0 4 0.00 4 61 0 5 0.00 5 62 0 7 0.00 7 63 0 7 0.00 7 64 0 8 0.00 8 65 1 7 12.50 8 66 1 6 14.29 7 67 0 6 0.00 6 68 0 9 0.00 9 69 0 5 0.00 5 70 0 3 0.00 3 71 0 5 0.00 5 72 1 5 16.67 6 73 0 7 0.00 7 74 0 3 0.00 3 75 0 6 0.00 6 76 0 3 0.00 3 77 0 2 0.00 2 78 0 3 0.00 3 79 0 2 0.00 2 80 1 5 16.67 6 81 0 2 0.00 2 82 0 3 0.00 3 83 0 4 0.00 4 84 0 4 0.00 4 85 0 5 0.00 5 86 0 4 0.00 4 87 0 4 0.00 4 88 0 5 0.00 5 89 0 4 0.00 4 90 0 2 0.00 2 91 0 5 0.00 5 92 0 2 0.00 2 93 0 4 0.00 4 94 0 3 0.00 3 95 0 5 0.00 5 96 0 2 0.00 2 97 0 2 0.00 2 98 0 3 0.00 3 99 0 3 0.00 3 100 1 0 100.00 1 101 0 2 0.00 2 102 0 3 0.00 3 103 0 2 0.00 2 104 0 4 0.00 4 105 0 2 0.00 2 106 0 0 0 107 0 3 0.00 3 108 0 1 0.00 1 109 0 3 0.00 3 110 0 0 0 111 0 0 0 112 0 2 0.00 2 113 0 3 0.00 3 114 0 1 0.00 1 115 0 0 0 116 0 1 0.00 1 117 0 2 0.00 2 118 0 3 0.00 3 119 0 4 0.00 4 120 0 1 0.00 1 121 0 1 0.00 1 122 0 1 0.00 1 123 0 2 0.00 2 124 0 0 0 125 0 1 0.00 1 126 0 0 0 127 0 0 0 128 0 1 0.00 1 129 0 0 0 130 0 0 0 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33 136 19.53 169 2 17 148 10.30 165 3 30 148 16.85 178 4 13 161 7.47 174 5 23 132 14.84 155 6 10 111 8.26 121 7 20 122 14.08 142 8 13 126 9.35 139 9 24 128 15.79 152 10 13 116 10.08 129 11 20 109 15.50 129 12 7 115 5.74 122 13 25 114 17.99 139 14 12 106 10.17 118 15 23 130 15.03 153 16 12 93 11.43 105 17 17 87 16.35 104 18 14 73 16.09 87 19 17 96 15.04 113 20 13 95 12.04 108 21 14 80 14.89 94 22 8 76 9.52 84 23 16 86 15.69 102 24 12 76 13.64 88 25 20 76 20.83 96 26 14 69 16.87 83 27 13 81 13.83 94 28 12 84 12.50 96 29 18 77 18.95 95 30 12 74 13.95 86 31 12 76 13.64 88 32 11 61 15.28 72 33 11 69 13.75 80 34 11 58 15.94 69 35 17 67 20.24 84 36 7 60 10.45 67 37 11 56 16.42 67 38 13 60 17.81 73 39 11 67 14.10 78 40 10 56 15.15 66 41 11 49 18.33 60 42 7 61 10.29 68 43 14 63 18.18 77 44 11 65 14.47 76 45 14 55 20.29 69 46 10 61 14.08 71 47 10 50 16.67 60 48 9 60 13.04 69 49 11 53 17.19 64 50 7 51 12.07 58 51 11 62 15.07 73 52 5 61 7.58 66 53 11 47 18.97 58 54 5 54 8.47 59 55 9 59 13.24 68 56 8 46 14.81 54 57 9 41 18.00 50 58 4 45 8.16 49 59 8 49 14.04 57 60 4 43 8.51 47 61 6 47 11.32 53 62 7 47 12.96 54 63 7 37 15.91 44 64 3 42 6.67 45 65 8 42 16.00 50 66 6 37 13.95 43 67 8 46 14.81 54 68 5 38 11.63 43 69 6 36 14.29 42 70 5 40 11.11 45 71 7 33 17.50 40 72 4 37 9.76 41 73 4 35 10.26 39 74 7 39 15.22 46 75 5 35 12.50 40 76 7 32 17.95 39 77 5 35 12.50 40 78 5 35 12.50 40 79 6 26 18.75 32 80 6 34 15.00 40 81 2 26 7.14 28 82 6 33 15.38 39 83 5 28 15.15 33 84 6 30 16.67 36 85 6 31 16.22 37 86 6 37 13.95 43 87 6 29 17.14 35 88 6 27 18.18 33 89 6 26 18.75 32 90 4 29 12.12 33 91 4 22 15.38 26 92 7 29 19.44 36 93 5 25 16.67 30 94 3 28 9.68 31 95 6 29 17.14 35 96 3 27 10.00 30 97 4 25 13.79 29 98 4 17 19.05 21 99 2 24 7.69 26 100 1 22 4.35 23 101 2 28 6.67 30 102 3 24 11.11 27 103 2 26 7.14 28 104 3 19 13.64 22 105 1 22 4.35 23 106 4 17 19.05 21 107 3 22 12.00 25 108 1 20 4.76 21 109 1 21 4.55 22 110 4 16 20.00 20 111 2 25 7.41 27 112 3 17 15.00 20 113 1 19 5.00 20 114 2 18 10.00 20 115 3 23 11.54 26 116 4 12 25.00 16 117 1 21 4.55 22 118 4 14 22.22 18 119 2 18 10.00 20 120 1 14 6.67 15 121 2 18 10.00 20 122 4 16 20.00 20 123 4 19 17.39 23 124 3 20 13.04 23 125 3 13 18.75 16 126 2 15 11.76 17 127 0 13 0.00 13 128 4 16 20.00 20 129 0 10 0.00 10 130 0 19 0.00 19 131 0 1 0.00 1