/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH10_01_S18_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11202
Pairs without alignments under any condition
24587
Pairs that did not map uniquely
4211
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
367157
Methylated C's in CpG context
39840
Methylated C's in CHG context
2387
Methylated C's in CHH context
36274
Methylated C's in Unknown context
545
Unmethylated C's in CpG context
15927
Unmethylated C's in CHG context
71440
Unmethylated C's in CHH context
201289
Unmethylated C's in Unknown context
1260
Percentage methylation (CpG context)
71.4%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
15.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5634
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5568
original bottom strand
Deduplication
Alignments analysed
11202
Unique alignments
9426
Duplicates removed
1776
Duplicated alignments were found at 1428 different positions
