CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 194 107 64.45 301 2 223 113 66.37 336 3 183 73 71.48 256 4 192 97 66.44 289 5 184 90 67.15 274 6 175 92 65.54 267 7 168 76 68.85 244 8 161 99 61.92 260 9 179 110 61.94 289 10 173 93 65.04 266 11 170 81 67.73 251 12 188 99 65.51 287 13 189 94 66.78 283 14 212 96 68.83 308 15 182 95 65.70 277 16 218 91 70.55 309 17 182 89 67.16 271 18 210 100 67.74 310 19 186 89 67.64 275 20 192 88 68.57 280 21 176 74 70.40 250 22 197 92 68.17 289 23 211 97 68.51 308 24 205 80 71.93 285 25 175 99 63.87 274 26 195 97 66.78 292 27 202 90 69.18 292 28 192 84 69.57 276 29 181 85 68.05 266 30 209 105 66.56 314 31 176 108 61.97 284 32 176 72 70.97 248 33 196 94 67.59 290 34 176 75 70.12 251 35 186 102 64.58 288 36 170 90 65.38 260 37 185 81 69.55 266 38 189 97 66.08 286 39 174 83 67.70 257 40 179 84 68.06 263 41 179 89 66.79 268 42 168 80 67.74 248 43 178 92 65.93 270 44 177 57 75.64 234 45 184 79 69.96 263 46 174 55 75.98 229 47 151 87 63.45 238 48 164 67 71.00 231 49 157 68 69.78 225 50 164 68 70.69 232 51 165 54 75.34 219 52 152 66 69.72 218 53 164 71 69.79 235 54 149 58 71.98 207 55 149 68 68.66 217 56 160 76 67.80 236 57 141 56 71.57 197 58 135 63 68.18 198 59 124 60 67.39 184 60 110 48 69.62 158 61 140 44 76.09 184 62 124 57 68.51 181 63 102 59 63.35 161 64 122 52 70.11 174 65 128 51 71.51 179 66 123 69 64.06 192 67 126 59 68.11 185 68 103 38 73.05 141 69 115 61 65.34 176 70 94 42 69.12 136 71 94 63 59.87 157 72 116 37 75.82 153 73 106 59 64.24 165 74 95 37 71.97 132 75 106 44 70.67 150 76 94 45 67.63 139 77 76 48 61.29 124 78 82 53 60.74 135 79 94 39 70.68 133 80 85 30 73.91 115 81 81 53 60.45 134 82 96 29 76.80 125 83 62 34 64.58 96 84 68 41 62.39 109 85 93 33 73.81 126 86 61 36 62.89 97 87 78 40 66.10 118 88 74 33 69.16 107 89 57 47 54.81 104 90 67 42 61.47 109 91 69 43 61.61 112 92 63 27 70.00 90 93 63 26 70.79 89 94 66 25 72.53 91 95 50 29 63.29 79 96 45 31 59.21 76 97 54 29 65.06 83 98 53 36 59.55 89 99 56 23 70.89 79 100 49 24 67.12 73 101 58 32 64.44 90 102 54 14 79.41 68 103 53 23 69.74 76 104 46 36 56.10 82 105 46 21 68.66 67 106 56 24 70.00 80 107 50 24 67.57 74 108 46 18 71.88 64 109 40 27 59.70 67 110 48 21 69.57 69 111 34 24 58.62 58 112 45 14 76.27 59 113 39 22 63.93 61 114 37 20 64.91 57 115 38 22 63.33 60 116 29 15 65.91 44 117 34 25 57.63 59 118 38 19 66.67 57 119 31 20 60.78 51 120 27 23 54.00 50 121 37 23 61.67 60 122 24 15 61.54 39 123 26 21 55.32 47 124 25 14 64.10 39 125 26 16 61.90 42 126 28 13 68.29 41 127 19 11 63.33 30 128 15 8 65.22 23 129 24 13 64.86 37 130 15 15 50.00 30 131 11 9 55.00 20 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 101 308 24.69 409 2 24 362 6.22 386 3 12 374 3.11 386 4 20 343 5.51 363 5 26 358 6.77 384 6 15 337 4.26 352 7 20 368 5.15 388 8 19 375 4.82 394 9 18 331 5.16 349 10 21 349 5.68 370 11 19 367 4.92 386 12 21 340 5.82 361 13 11 358 2.98 369 14 7 335 2.05 342 15 15 366 3.94 381 16 7 356 1.93 363 17 9 332 2.64 341 18 13 339 3.69 352 19 16 362 4.23 378 20 8 341 2.29 349 21 11 349 3.06 360 22 17 364 4.46 381 23 9 382 2.30 391 24 10 327 2.97 337 25 7 362 1.90 369 26 9 383 2.30 392 27 16 361 4.24 377 28 18 334 5.11 352 29 15 350 4.11 365 30 11 358 2.98 369 31 21 362 5.48 383 32 19 354 5.09 373 33 11 317 3.35 328 34 12 335 3.46 347 35 13 330 3.79 343 36 17 373 4.36 390 37 11 313 3.40 324 38 5 304 1.62 309 39 10 351 2.77 361 40 13 300 4.15 313 41 13 313 3.99 326 42 16 333 4.58 349 43 8 295 2.64 303 44 13 332 3.77 345 45 9 296 2.95 305 46 14 304 4.40 318 47 9 276 3.16 285 48 11 276 3.83 287 49 5 293 1.68 298 50 7 279 2.45 286 51 12 306 3.77 318 52 11 268 3.94 279 53 9 266 3.27 275 54 10 248 3.88 258 55 17 281 5.70 298 56 5 262 1.87 267 57 9 249 3.49 258 58 8 236 3.28 244 59 4 234 1.68 238 60 9 243 3.57 252 61 12 246 4.65 258 62 10 232 4.13 242 63 6 234 2.50 240 64 9 213 4.05 222 65 6 238 2.46 244 66 7 237 2.87 244 67 8 213 3.62 221 68 6 189 3.08 195 69 8 212 3.64 220 70 4 199 1.97 203 71 3 194 1.52 197 72 9 193 4.46 202 73 7 190 3.55 197 74 2 192 1.03 194 75 9 198 4.35 207 76 2 171 1.16 173 77 4 176 2.22 180 78 6 185 3.14 191 79 5 159 3.05 164 80 7 166 4.05 173 81 6 179 3.24 185 82 2 140 1.41 142 83 7 161 4.17 168 84 10 189 5.03 199 85 8 151 5.03 159 86 3 138 2.13 141 87 10 138 6.76 148 88 2 145 1.36 147 89 2 138 1.43 140 90 4 130 2.99 134 91 4 136 2.86 140 92 4 129 3.01 133 93 5 125 3.85 130 94 6 122 4.69 128 95 4 109 3.54 113 96 3 115 2.54 118 97 3 108 2.70 111 98 1 103 0.96 104 99 2 96 2.04 98 100 5 114 4.20 119 101 5 117 4.10 122 102 2 92 2.13 94 103 2 104 1.89 106 104 3 90 3.23 93 105 1 112 0.88 113 106 0 96 0.00 96 107 0 93 0.00 93 108 3 94 3.09 97 109 2 81 2.41 83 110 1 80 1.23 81 111 0 92 0.00 92 112 0 73 0.00 73 113 1 75 1.32 76 114 2 67 2.90 69 115 5 57 8.06 62 116 2 84 2.33 86 117 2 87 2.25 89 118 1 85 1.16 86 119 2 77 2.53 79 120 0 75 0.00 75 121 3 56 5.08 59 122 0 64 0.00 64 123 0 63 0.00 63 124 1 66 1.49 67 125 0 53 0.00 53 126 2 66 2.94 68 127 1 52 1.89 53 128 4 53 7.02 57 129 1 53 1.85 54 130 2 41 4.65 43 131 0 25 0.00 25 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 271 911 22.93 1182 2 225 926 19.55 1151 3 244 904 21.25 1148 4 288 915 23.94 1203 5 263 968 21.36 1231 6 243 914 21.00 1157 7 257 898 22.25 1155 8 229 895 20.37 1124 9 259 935 21.69 1194 10 278 955 22.55 1233 11 249 936 21.01 1185 12 283 898 23.96 1181 13 260 974 21.07 1234 14 284 1002 22.08 1286 15 239 922 20.59 1161 16 255 975 20.73 1230 17 231 1000 18.77 1231 18 273 984 21.72 1257 19 264 1029 20.42 1293 20 253 974 20.62 1227 21 252 1013 19.92 1265 22 247 995 19.89 1242 23 263 1001 20.81 1264 24 267 1017 20.79 1284 25 233 970 19.37 1203 26 257 988 20.64 1245 27 231 973 19.19 1204 28 278 1024 21.35 1302 29 244 985 19.85 1229 30 230 920 20.00 1150 31 218 907 19.38 1125 32 205 922 18.19 1127 33 238 935 20.29 1173 34 253 898 21.98 1151 35 176 912 16.18 1088 36 180 887 16.87 1067 37 201 876 18.66 1077 38 198 967 17.00 1165 39 201 903 18.21 1104 40 184 858 17.66 1042 41 178 875 16.90 1053 42 168 867 16.23 1035 43 187 833 18.33 1020 44 173 849 16.93 1022 45 154 872 15.01 1026 46 160 815 16.41 975 47 167 810 17.09 977 48 184 823 18.27 1007 49 164 826 16.57 990 50 142 797 15.12 939 51 135 774 14.85 909 52 145 756 16.09 901 53 155 750 17.13 905 54 150 734 16.97 884 55 135 739 15.45 874 56 144 720 16.67 864 57 113 692 14.04 805 58 148 719 17.07 867 59 120 684 14.93 804 60 111 684 13.96 795 61 108 631 14.61 739 62 108 654 14.17 762 63 126 675 15.73 801 64 113 628 15.25 741 65 90 625 12.59 715 66 102 609 14.35 711 67 97 597 13.98 694 68 108 604 15.17 712 69 103 570 15.30 673 70 99 616 13.85 715 71 68 579 10.51 647 72 89 594 13.03 683 73 87 558 13.49 645 74 95 552 14.68 647 75 69 523 11.66 592 76 93 489 15.98 582 77 80 508 13.61 588 78 91 509 15.17 600 79 85 491 14.76 576 80 65 491 11.69 556 81 53 506 9.48 559 82 88 466 15.88 554 83 61 454 11.84 515 84 77 442 14.84 519 85 62 442 12.30 504 86 56 428 11.57 484 87 59 396 12.97 455 88 72 439 14.09 511 89 66 428 13.36 494 90 59 408 12.63 467 91 38 395 8.78 433 92 51 406 11.16 457 93 57 407 12.28 464 94 62 391 13.69 453 95 43 390 9.93 433 96 42 373 10.12 415 97 51 354 12.59 405 98 61 351 14.81 412 99 58 332 14.87 390 100 39 328 10.63 367 101 33 331 9.07 364 102 48 310 13.41 358 103 47 315 12.98 362 104 43 286 13.07 329 105 37 301 10.95 338 106 37 271 12.01 308 107 33 288 10.28 321 108 47 293 13.82 340 109 33 262 11.19 295 110 35 260 11.86 295 111 27 265 9.25 292 112 35 240 12.73 275 113 29 252 10.32 281 114 35 240 12.73 275 115 24 247 8.86 271 116 29 253 10.28 282 117 32 224 12.50 256 118 32 224 12.50 256 119 37 199 15.68 236 120 17 181 8.59 198 121 23 208 9.96 231 122 23 206 10.04 229 123 31 182 14.55 213 124 21 196 9.68 217 125 20 190 9.52 210 126 19 207 8.41 226 127 20 162 10.99 182 128 30 186 13.89 216 129 25 157 13.74 182 130 17 168 9.19 185 131 10 115 8.00 125 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18 10 64.29 28 2 35 7 83.33 42 3 64 13 83.12 77 4 16 14 53.33 30 5 18 15 54.55 33 6 18 15 54.55 33 7 17 13 56.67 30 8 21 13 61.76 34 9 19 13 59.38 32 10 27 16 62.79 43 11 25 9 73.53 34 12 27 16 62.79 43 13 18 17 51.43 35 14 20 14 58.82 34 15 31 8 79.49 39 16 27 17 61.36 44 17 19 10 65.52 29 18 15 11 57.69 26 19 18 7 72.00 25 20 11 5 68.75 16 21 14 3 82.35 17 22 15 8 65.22 23 23 12 9 57.14 21 24 13 5 72.22 18 25 15 6 71.43 21 26 14 4 77.78 18 27 13 9 59.09 22 28 10 6 62.50 16 29 9 14 39.13 23 30 12 8 60.00 20 31 16 6 72.73 22 32 11 3 78.57 14 33 14 5 73.68 19 34 8 5 61.54 13 35 15 3 83.33 18 36 13 7 65.00 20 37 4 7 36.36 11 38 8 1 88.89 9 39 9 7 56.25 16 40 15 1 93.75 16 41 4 8 33.33 12 42 14 7 66.67 21 43 9 9 50.00 18 44 10 3 76.92 13 45 8 3 72.73 11 46 10 1 90.91 11 47 18 2 90.00 20 48 10 5 66.67 15 49 9 6 60.00 15 50 7 6 53.85 13 51 7 3 70.00 10 52 4 5 44.44 9 53 4 1 80.00 5 54 7 4 63.64 11 55 6 2 75.00 8 56 7 9 43.75 16 57 2 3 40.00 5 58 5 1 83.33 6 59 3 7 30.00 10 60 3 2 60.00 5 61 8 0 100.00 8 62 5 2 71.43 7 63 4 0 100.00 4 64 5 3 62.50 8 65 5 2 71.43 7 66 4 2 66.67 6 67 6 1 85.71 7 68 3 3 50.00 6 69 5 6 45.45 11 70 2 2 50.00 4 71 5 2 71.43 7 72 4 2 66.67 6 73 2 4 33.33 6 74 4 1 80.00 5 75 1 2 33.33 3 76 8 2 80.00 10 77 2 5 28.57 7 78 3 2 60.00 5 79 0 2 0.00 2 80 6 2 75.00 8 81 3 1 75.00 4 82 1 1 50.00 2 83 3 4 42.86 7 84 2 1 66.67 3 85 0 2 0.00 2 86 2 1 66.67 3 87 1 3 25.00 4 88 0 0 0 89 2 2 50.00 4 90 4 1 80.00 5 91 4 1 80.00 5 92 3 1 75.00 4 93 1 2 33.33 3 94 1 1 50.00 2 95 3 3 50.00 6 96 5 3 62.50 8 97 5 1 83.33 6 98 4 3 57.14 7 99 0 0 0 100 3 1 75.00 4 101 2 0 100.00 2 102 1 1 50.00 2 103 2 4 33.33 6 104 1 0 100.00 1 105 0 0 0 106 0 1 0.00 1 107 3 1 75.00 4 108 2 2 50.00 4 109 1 1 50.00 2 110 1 1 50.00 2 111 1 2 33.33 3 112 1 2 33.33 3 113 1 0 100.00 1 114 2 1 66.67 3 115 2 0 100.00 2 116 2 2 50.00 4 117 0 1 0.00 1 118 0 2 0.00 2 119 1 1 50.00 2 120 1 0 100.00 1 121 2 0 100.00 2 122 2 0 100.00 2 123 1 0 100.00 1 124 0 2 0.00 2 125 0 1 0.00 1 126 0 1 0.00 1 127 2 2 50.00 4 128 3 0 100.00 3 129 0 0 0 130 1 0 100.00 1 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10 50 16.67 60 2 5 39 11.36 44 3 21 69 23.33 90 4 2 98 2.00 100 5 3 51 5.56 54 6 2 53 3.64 55 7 2 63 3.08 65 8 2 90 2.17 92 9 3 44 6.38 47 10 3 45 6.25 48 11 4 51 7.27 55 12 4 64 5.88 68 13 1 72 1.37 73 14 2 55 3.51 57 15 1 59 1.67 60 16 0 57 0.00 57 17 1 45 2.17 46 18 1 44 2.22 45 19 0 36 0.00 36 20 1 35 2.78 36 21 2 24 7.69 26 22 0 26 0.00 26 23 1 29 3.33 30 24 2 20 9.09 22 25 2 28 6.67 30 26 1 37 2.63 38 27 0 26 0.00 26 28 1 19 5.00 20 29 0 26 0.00 26 30 1 30 3.23 31 31 0 24 0.00 24 32 0 19 0.00 19 33 0 31 0.00 31 34 2 16 11.11 18 35 0 34 0.00 34 36 1 33 2.94 34 37 1 25 3.85 26 38 0 18 0.00 18 39 0 29 0.00 29 40 1 18 5.26 19 41 0 21 0.00 21 42 2 22 8.33 24 43 1 31 3.12 32 44 0 20 0.00 20 45 0 20 0.00 20 46 1 16 5.88 17 47 0 16 0.00 16 48 1 16 5.88 17 49 0 21 0.00 21 50 1 16 5.88 17 51 0 12 0.00 12 52 2 22 8.33 24 53 1 14 6.67 15 54 0 16 0.00 16 55 0 18 0.00 18 56 0 14 0.00 14 57 0 13 0.00 13 58 1 9 10.00 10 59 0 9 0.00 9 60 1 8 11.11 9 61 0 13 0.00 13 62 0 13 0.00 13 63 0 11 0.00 11 64 0 7 0.00 7 65 0 10 0.00 10 66 0 11 0.00 11 67 0 20 0.00 20 68 1 8 11.11 9 69 0 12 0.00 12 70 0 12 0.00 12 71 1 3 25.00 4 72 0 7 0.00 7 73 0 11 0.00 11 74 0 10 0.00 10 75 1 8 11.11 9 76 1 5 16.67 6 77 0 9 0.00 9 78 1 9 10.00 10 79 0 10 0.00 10 80 0 5 0.00 5 81 0 4 0.00 4 82 1 8 11.11 9 83 0 8 0.00 8 84 0 11 0.00 11 85 0 5 0.00 5 86 0 1 0.00 1 87 0 5 0.00 5 88 0 7 0.00 7 89 0 3 0.00 3 90 0 10 0.00 10 91 0 6 0.00 6 92 0 6 0.00 6 93 0 8 0.00 8 94 0 8 0.00 8 95 0 4 0.00 4 96 0 2 0.00 2 97 2 7 22.22 9 98 0 6 0.00 6 99 1 4 20.00 5 100 0 5 0.00 5 101 1 5 16.67 6 102 1 4 20.00 5 103 0 9 0.00 9 104 0 5 0.00 5 105 0 2 0.00 2 106 0 7 0.00 7 107 0 6 0.00 6 108 0 3 0.00 3 109 0 3 0.00 3 110 0 2 0.00 2 111 0 4 0.00 4 112 0 3 0.00 3 113 0 4 0.00 4 114 0 3 0.00 3 115 0 4 0.00 4 116 0 6 0.00 6 117 0 1 0.00 1 118 0 2 0.00 2 119 0 4 0.00 4 120 0 2 0.00 2 121 0 0 0 122 0 3 0.00 3 123 0 1 0.00 1 124 0 5 0.00 5 125 0 4 0.00 4 126 0 3 0.00 3 127 0 3 0.00 3 128 0 2 0.00 2 129 0 5 0.00 5 130 0 2 0.00 2 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40 162 19.80 202 2 18 180 9.09 198 3 52 154 25.24 206 4 18 192 8.57 210 5 27 134 16.77 161 6 16 138 10.39 154 7 34 132 20.48 166 8 26 128 16.88 154 9 31 168 15.58 199 10 29 133 17.90 162 11 19 142 11.80 161 12 25 157 13.74 182 13 29 170 14.57 199 14 27 213 11.25 240 15 27 169 13.78 196 16 21 163 11.41 184 17 22 128 14.67 150 18 17 95 15.18 112 19 25 106 19.08 131 20 20 103 16.26 123 21 22 109 16.79 131 22 16 104 13.33 120 23 19 105 15.32 124 24 17 96 15.04 113 25 22 101 17.89 123 26 18 88 16.98 106 27 13 81 13.83 94 28 17 81 17.35 98 29 14 104 11.86 118 30 13 83 13.54 96 31 18 78 18.75 96 32 6 69 8.00 75 33 17 78 17.89 95 34 12 87 12.12 99 35 16 78 17.02 94 36 13 80 13.98 93 37 19 87 17.92 106 38 6 94 6.00 100 39 17 74 18.68 91 40 11 77 12.50 88 41 18 79 18.56 97 42 6 61 8.96 67 43 18 71 20.22 89 44 11 65 14.47 76 45 18 80 18.37 98 46 9 67 11.84 76 47 17 79 17.71 96 48 7 60 10.45 67 49 14 60 18.92 74 50 9 58 13.43 67 51 13 56 18.84 69 52 8 63 11.27 71 53 7 60 10.45 67 54 9 54 14.29 63 55 12 58 17.14 70 56 10 49 16.95 59 57 13 50 20.63 63 58 7 57 10.94 64 59 9 46 16.36 55 60 10 49 16.95 59 61 13 43 23.21 56 62 8 50 13.79 58 63 8 51 13.56 59 64 9 49 15.52 58 65 10 40 20.00 50 66 7 40 14.89 47 67 14 35 28.57 49 68 6 41 12.77 47 69 8 29 21.62 37 70 8 39 17.02 47 71 9 28 24.32 37 72 5 48 9.43 53 73 7 25 21.88 32 74 4 38 9.52 42 75 6 32 15.79 38 76 8 33 19.51 41 77 7 31 18.42 38 78 5 32 13.51 37 79 5 32 13.51 37 80 4 37 9.76 41 81 6 26 18.75 32 82 3 32 8.57 35 83 9 39 18.75 48 84 3 40 6.98 43 85 5 32 13.51 37 86 3 33 8.33 36 87 7 37 15.91 44 88 3 36 7.69 39 89 5 31 13.89 36 90 4 31 11.43 35 91 4 28 12.50 32 92 5 30 14.29 35 93 6 29 17.14 35 94 5 35 12.50 40 95 4 28 12.50 32 96 3 20 13.04 23 97 5 31 13.89 36 98 5 26 16.13 31 99 3 26 10.34 29 100 2 28 6.67 30 101 3 23 11.54 26 102 2 24 7.69 26 103 5 22 18.52 27 104 2 23 8.00 25 105 6 22 21.43 28 106 1 26 3.70 27 107 5 27 15.62 32 108 2 21 8.70 23 109 3 20 13.04 23 110 5 22 18.52 27 111 3 22 12.00 25 112 3 19 13.64 22 113 5 26 16.13 31 114 1 22 4.35 23 115 5 23 17.86 28 116 3 20 13.04 23 117 0 23 0.00 23 118 3 15 16.67 18 119 2 19 9.52 21 120 3 13 18.75 16 121 1 23 4.17 24 122 2 12 14.29 14 123 1 15 6.25 16 124 0 12 0.00 12 125 1 17 5.56 18 126 3 13 18.75 16 127 0 17 0.00 17 128 1 14 6.67 15 129 1 13 7.14 14 130 2 16 11.11 18 131 0 4 0.00 4