/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_28_S17_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10849
Pairs without alignments under any condition
25410
Pairs that did not map uniquely
3741
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
370094
Methylated C's in CpG context
37967
Methylated C's in CHG context
2740
Methylated C's in CHH context
37987
Methylated C's in Unknown context
585
Unmethylated C's in CpG context
18254
Unmethylated C's in CHG context
72007
Unmethylated C's in CHH context
201139
Unmethylated C's in Unknown context
1195
Percentage methylation (CpG context)
67.5%
Percentage methylation (CHG context)
3.7%
Percentage methylation (CHH context)
15.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5416
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5433
original bottom strand
Deduplication
Alignments analysed
10849
Unique alignments
8828
Duplicates removed
2021
Duplicated alignments were found at 1575 different positions
