/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_13_S16_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11691
Pairs without alignments under any condition
23421
Pairs that did not map uniquely
4888
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
431064
Methylated C's in CpG context
24420
Methylated C's in CHG context
2009
Methylated C's in CHH context
48147
Methylated C's in Unknown context
684
Unmethylated C's in CpG context
25606
Unmethylated C's in CHG context
71773
Unmethylated C's in CHH context
259109
Unmethylated C's in Unknown context
1396
Percentage methylation (CpG context)
48.8%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
15.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5843
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5848
original bottom strand
Deduplication
Alignments analysed
11691
Unique alignments
9638
Duplicates removed
2053
Duplicated alignments were found at 1537 different positions
