CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 196 109 64.26 305 2 236 125 65.37 361 3 212 98 68.39 310 4 174 75 69.88 249 5 192 84 69.57 276 6 173 66 72.38 239 7 180 81 68.97 261 8 177 80 68.87 257 9 167 81 67.34 248 10 178 91 66.17 269 11 211 89 70.33 300 12 221 77 74.16 298 13 208 96 68.42 304 14 202 87 69.90 289 15 182 87 67.66 269 16 221 103 68.21 324 17 199 102 66.11 301 18 199 85 70.07 284 19 191 77 71.27 268 20 187 79 70.30 266 21 198 80 71.22 278 22 174 89 66.16 263 23 238 84 73.91 322 24 201 83 70.77 284 25 197 73 72.96 270 26 204 89 69.62 293 27 201 88 69.55 289 28 192 84 69.57 276 29 226 92 71.07 318 30 171 94 64.53 265 31 176 91 65.92 267 32 200 79 71.68 279 33 204 75 73.12 279 34 171 68 71.55 239 35 186 62 75.00 248 36 163 96 62.93 259 37 168 79 68.02 247 38 180 86 67.67 266 39 186 86 68.38 272 40 182 77 70.27 259 41 184 71 72.16 255 42 164 69 70.39 233 43 150 72 67.57 222 44 169 75 69.26 244 45 150 64 70.09 214 46 147 65 69.34 212 47 154 66 70.00 220 48 158 67 70.22 225 49 140 65 68.29 205 50 142 71 66.67 213 51 137 59 69.90 196 52 152 57 72.73 209 53 117 59 66.48 176 54 130 54 70.65 184 55 154 53 74.40 207 56 126 53 70.39 179 57 122 53 69.71 175 58 116 36 76.32 152 59 128 55 69.95 183 60 114 49 69.94 163 61 102 51 66.67 153 62 108 53 67.08 161 63 101 43 70.14 144 64 97 38 71.85 135 65 90 52 63.38 142 66 97 50 65.99 147 67 86 40 68.25 126 68 101 48 67.79 149 69 76 49 60.80 125 70 99 48 67.35 147 71 80 36 68.97 116 72 65 33 66.33 98 73 74 44 62.71 118 74 71 38 65.14 109 75 72 32 69.23 104 76 61 33 64.89 94 77 59 31 65.56 90 78 63 28 69.23 91 79 66 35 65.35 101 80 57 30 65.52 87 81 58 30 65.91 88 82 50 38 56.82 88 83 49 26 65.33 75 84 60 23 72.29 83 85 38 31 55.07 69 86 50 30 62.50 80 87 52 32 61.90 84 88 42 33 56.00 75 89 48 21 69.57 69 90 41 29 58.57 70 91 36 16 69.23 52 92 35 21 62.50 56 93 31 18 63.27 49 94 41 23 64.06 64 95 42 12 77.78 54 96 41 12 77.36 53 97 32 14 69.57 46 98 34 21 61.82 55 99 35 20 63.64 55 100 24 16 60.00 40 101 28 14 66.67 42 102 30 9 76.92 39 103 32 17 65.31 49 104 16 8 66.67 24 105 26 10 72.22 36 106 31 17 64.58 48 107 28 14 66.67 42 108 29 14 67.44 43 109 19 19 50.00 38 110 17 17 50.00 34 111 19 7 73.08 26 112 26 16 61.90 42 113 23 13 63.89 36 114 12 11 52.17 23 115 21 8 72.41 29 116 19 10 65.52 29 117 14 16 46.67 30 118 17 11 60.71 28 119 17 9 65.38 26 120 22 10 68.75 32 121 13 11 54.17 24 122 15 7 68.18 22 123 15 10 60.00 25 124 11 6 64.71 17 125 14 9 60.87 23 126 8 9 47.06 17 127 13 5 72.22 18 128 12 11 52.17 23 129 11 7 61.11 18 130 9 8 52.94 17 131 5 5 50.00 10 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 90 318 22.06 408 2 24 302 7.36 326 3 23 320 6.71 343 4 23 320 6.71 343 5 16 325 4.69 341 6 16 287 5.28 303 7 17 312 5.17 329 8 13 314 3.98 327 9 18 335 5.10 353 10 23 342 6.30 365 11 12 324 3.57 336 12 19 341 5.28 360 13 9 334 2.62 343 14 5 350 1.41 355 15 8 335 2.33 343 16 15 353 4.08 368 17 13 320 3.90 333 18 12 324 3.57 336 19 13 360 3.49 373 20 14 369 3.66 383 21 14 323 4.15 337 22 7 346 1.98 353 23 15 378 3.82 393 24 11 343 3.11 354 25 10 380 2.56 390 26 10 334 2.91 344 27 12 364 3.19 376 28 9 336 2.61 345 29 7 324 2.11 331 30 12 309 3.74 321 31 13 337 3.71 350 32 6 345 1.71 351 33 13 312 4.00 325 34 13 297 4.19 310 35 9 321 2.73 330 36 8 341 2.29 349 37 13 304 4.10 317 38 13 304 4.10 317 39 7 288 2.37 295 40 8 284 2.74 292 41 10 291 3.32 301 42 10 283 3.41 293 43 6 275 2.14 281 44 6 302 1.95 308 45 6 248 2.36 254 46 13 266 4.66 279 47 3 265 1.12 268 48 6 263 2.23 269 49 13 231 5.33 244 50 11 280 3.78 291 51 6 237 2.47 243 52 8 223 3.46 231 53 5 242 2.02 247 54 5 228 2.15 233 55 8 207 3.72 215 56 4 228 1.72 232 57 10 213 4.48 223 58 2 223 0.89 225 59 6 221 2.64 227 60 8 187 4.10 195 61 7 212 3.20 219 62 8 180 4.26 188 63 5 198 2.46 203 64 3 173 1.70 176 65 3 186 1.59 189 66 7 164 4.09 171 67 4 165 2.37 169 68 5 155 3.12 160 69 8 149 5.10 157 70 4 148 2.63 152 71 6 138 4.17 144 72 6 135 4.26 141 73 4 135 2.88 139 74 4 143 2.72 147 75 3 125 2.34 128 76 3 114 2.56 117 77 3 112 2.61 115 78 3 114 2.56 117 79 4 111 3.48 115 80 1 121 0.82 122 81 6 106 5.36 112 82 5 92 5.15 97 83 3 112 2.61 115 84 1 89 1.11 90 85 1 100 0.99 101 86 4 96 4.00 100 87 4 81 4.71 85 88 1 90 1.10 91 89 0 95 0.00 95 90 3 77 3.75 80 91 0 77 0.00 77 92 3 74 3.90 77 93 3 77 3.75 80 94 6 69 8.00 75 95 1 68 1.45 69 96 3 73 3.95 76 97 3 72 4.00 75 98 0 63 0.00 63 99 0 42 0.00 42 100 2 44 4.35 46 101 1 67 1.47 68 102 2 72 2.70 74 103 1 50 1.96 51 104 1 52 1.89 53 105 2 44 4.35 46 106 0 48 0.00 48 107 2 50 3.85 52 108 2 39 4.88 41 109 3 51 5.56 54 110 1 40 2.44 41 111 0 37 0.00 37 112 0 41 0.00 41 113 1 40 2.44 41 114 1 31 3.12 32 115 2 43 4.44 45 116 1 35 2.78 36 117 1 37 2.63 38 118 1 33 2.94 34 119 2 36 5.26 38 120 0 25 0.00 25 121 1 27 3.57 28 122 1 29 3.33 30 123 0 24 0.00 24 124 2 26 7.14 28 125 3 24 11.11 27 126 3 26 10.34 29 127 2 25 7.41 27 128 2 24 7.69 26 129 2 20 9.09 22 130 2 15 11.76 17 131 2 8 20.00 10 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 331 934 26.17 1265 2 250 932 21.15 1182 3 300 935 24.29 1235 4 314 944 24.96 1258 5 366 946 27.90 1312 6 276 966 22.22 1242 7 347 900 27.83 1247 8 242 983 19.76 1225 9 292 992 22.74 1284 10 338 912 27.04 1250 11 346 927 27.18 1273 12 322 943 25.45 1265 13 324 942 25.59 1266 14 336 957 25.99 1293 15 319 957 25.00 1276 16 354 995 26.24 1349 17 313 1034 23.24 1347 18 343 966 26.20 1309 19 329 1038 24.07 1367 20 337 994 25.32 1331 21 307 1041 22.77 1348 22 349 994 25.99 1343 23 303 1046 22.46 1349 24 364 1015 26.40 1379 25 333 1009 24.81 1342 26 340 982 25.72 1322 27 291 1027 22.08 1318 28 339 1031 24.74 1370 29 290 998 22.52 1288 30 345 942 26.81 1287 31 280 965 22.49 1245 32 323 980 24.79 1303 33 286 962 22.92 1248 34 306 941 24.54 1247 35 266 952 21.84 1218 36 280 899 23.75 1179 37 272 849 24.26 1121 38 291 915 24.13 1206 39 237 901 20.83 1138 40 280 901 23.71 1181 41 229 845 21.32 1074 42 265 872 23.31 1137 43 222 859 20.54 1081 44 248 814 23.35 1062 45 216 780 21.69 996 46 254 788 24.38 1042 47 185 744 19.91 929 48 222 776 22.24 998 49 201 766 20.79 967 50 211 733 22.35 944 51 157 710 18.11 867 52 198 714 21.71 912 53 168 677 19.88 845 54 204 709 22.34 913 55 151 669 18.41 820 56 191 642 22.93 833 57 163 596 21.48 759 58 175 594 22.76 769 59 145 584 19.89 729 60 181 590 23.48 771 61 149 554 21.19 703 62 161 571 21.99 732 63 132 560 19.08 692 64 169 545 23.67 714 65 120 544 18.07 664 66 170 517 24.75 687 67 126 468 21.21 594 68 149 491 23.28 640 69 125 495 20.16 620 70 156 466 25.08 622 71 108 461 18.98 569 72 137 443 23.62 580 73 101 440 18.67 541 74 137 451 23.30 588 75 92 432 17.56 524 76 136 361 27.36 497 77 97 421 18.73 518 78 124 389 24.17 513 79 102 405 20.12 507 80 109 365 23.00 474 81 85 357 19.23 442 82 111 357 23.72 468 83 80 324 19.80 404 84 103 333 23.62 436 85 86 296 22.51 382 86 90 301 23.02 391 87 63 321 16.41 384 88 94 259 26.63 353 89 67 300 18.26 367 90 87 248 25.97 335 91 64 267 19.34 331 92 82 252 24.55 334 93 64 250 20.38 314 94 63 250 20.13 313 95 60 241 19.93 301 96 63 227 21.72 290 97 55 238 18.77 293 98 78 203 27.76 281 99 52 211 19.77 263 100 60 212 22.06 272 101 42 220 16.03 262 102 57 193 22.80 250 103 40 209 16.06 249 104 65 176 26.97 241 105 36 195 15.58 231 106 51 175 22.57 226 107 26 187 12.21 213 108 53 182 22.55 235 109 29 153 15.93 182 110 47 163 22.38 210 111 30 156 16.13 186 112 41 145 22.04 186 113 30 156 16.13 186 114 44 131 25.14 175 115 24 161 12.97 185 116 39 127 23.49 166 117 22 140 13.58 162 118 42 133 24.00 175 119 28 127 18.06 155 120 37 135 21.51 172 121 25 128 16.34 153 122 29 102 22.14 131 123 19 116 14.07 135 124 33 110 23.08 143 125 20 125 13.79 145 126 27 112 19.42 139 127 21 121 14.79 142 128 26 115 18.44 141 129 26 92 22.03 118 130 22 96 18.64 118 131 18 75 19.35 93 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 11 42.11 19 2 19 3 86.36 22 3 31 11 73.81 42 4 9 15 37.50 24 5 8 8 50.00 16 6 4 11 26.67 15 7 9 11 45.00 20 8 7 13 35.00 20 9 12 5 70.59 17 10 6 4 60.00 10 11 10 13 43.48 23 12 7 13 35.00 20 13 4 7 36.36 11 14 8 7 53.33 15 15 5 11 31.25 16 16 9 4 69.23 13 17 12 5 70.59 17 18 6 2 75.00 8 19 5 5 50.00 10 20 8 3 72.73 11 21 2 3 40.00 5 22 3 5 37.50 8 23 4 1 80.00 5 24 5 5 50.00 10 25 6 3 66.67 9 26 4 1 80.00 5 27 5 2 71.43 7 28 2 7 22.22 9 29 3 1 75.00 4 30 2 7 22.22 9 31 7 4 63.64 11 32 3 6 33.33 9 33 5 5 50.00 10 34 4 3 57.14 7 35 5 6 45.45 11 36 5 3 62.50 8 37 0 4 0.00 4 38 2 0 100.00 2 39 5 2 71.43 7 40 2 3 40.00 5 41 2 6 25.00 8 42 3 4 42.86 7 43 0 5 0.00 5 44 1 1 50.00 2 45 0 2 0.00 2 46 3 2 60.00 5 47 2 1 66.67 3 48 1 2 33.33 3 49 1 4 20.00 5 50 0 2 0.00 2 51 0 2 0.00 2 52 3 2 60.00 5 53 1 0 100.00 1 54 0 3 0.00 3 55 1 0 100.00 1 56 2 1 66.67 3 57 0 1 0.00 1 58 2 1 66.67 3 59 0 2 0.00 2 60 1 1 50.00 2 61 0 1 0.00 1 62 0 1 0.00 1 63 0 1 0.00 1 64 0 0 0 65 1 0 100.00 1 66 2 0 100.00 2 67 0 3 0.00 3 68 0 1 0.00 1 69 0 0 0 70 1 3 25.00 4 71 2 0 100.00 2 72 1 1 50.00 2 73 0 1 0.00 1 74 1 2 33.33 3 75 0 0 0 76 1 2 33.33 3 77 0 1 0.00 1 78 0 3 0.00 3 79 1 1 50.00 2 80 1 0 100.00 1 81 2 0 100.00 2 82 2 1 66.67 3 83 0 0 0 84 2 0 100.00 2 85 0 1 0.00 1 86 1 2 33.33 3 87 0 1 0.00 1 88 0 0 0 89 0 1 0.00 1 90 1 1 50.00 2 91 1 1 50.00 2 92 0 0 0 93 0 0 0 94 1 0 100.00 1 95 0 0 0 96 0 0 0 97 0 0 0 98 1 1 50.00 2 99 0 0 0 100 0 0 0 101 0 0 0 102 1 1 50.00 2 103 0 0 0 104 0 0 0 105 0 1 0.00 1 106 0 1 0.00 1 107 0 0 0 108 0 0 0 109 0 0 0 110 1 0 100.00 1 111 0 0 0 112 0 0 0 113 0 0 0 114 0 0 0 115 0 0 0 116 1 0 100.00 1 117 0 0 0 118 0 0 0 119 0 0 0 120 0 0 0 121 0 2 0.00 2 122 0 0 0 123 0 0 0 124 0 0 0 125 0 0 0 126 0 0 0 127 0 0 0 128 0 0 0 129 0 0 0 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 24 14.29 28 2 1 17 5.56 18 3 18 46 28.12 64 4 0 52 0.00 52 5 0 17 0.00 17 6 1 25 3.85 26 7 2 26 7.14 28 8 1 41 2.38 42 9 0 22 0.00 22 10 0 19 0.00 19 11 1 21 4.55 22 12 1 29 3.33 30 13 0 28 0.00 28 14 0 22 0.00 22 15 0 15 0.00 15 16 0 16 0.00 16 17 1 19 5.00 20 18 1 14 6.67 15 19 0 10 0.00 10 20 0 18 0.00 18 21 1 11 8.33 12 22 0 9 0.00 9 23 2 16 11.11 18 24 0 16 0.00 16 25 0 10 0.00 10 26 0 7 0.00 7 27 0 4 0.00 4 28 0 15 0.00 15 29 0 9 0.00 9 30 0 10 0.00 10 31 0 7 0.00 7 32 1 8 11.11 9 33 0 7 0.00 7 34 0 7 0.00 7 35 0 5 0.00 5 36 0 8 0.00 8 37 0 4 0.00 4 38 1 6 14.29 7 39 0 6 0.00 6 40 1 9 10.00 10 41 0 8 0.00 8 42 0 4 0.00 4 43 0 5 0.00 5 44 0 9 0.00 9 45 1 5 16.67 6 46 1 7 12.50 8 47 0 4 0.00 4 48 0 7 0.00 7 49 1 3 25.00 4 50 0 5 0.00 5 51 0 1 0.00 1 52 0 8 0.00 8 53 1 3 25.00 4 54 0 2 0.00 2 55 0 5 0.00 5 56 0 3 0.00 3 57 0 4 0.00 4 58 0 5 0.00 5 59 0 6 0.00 6 60 0 5 0.00 5 61 0 4 0.00 4 62 0 2 0.00 2 63 0 1 0.00 1 64 0 3 0.00 3 65 0 1 0.00 1 66 1 1 50.00 2 67 0 1 0.00 1 68 0 4 0.00 4 69 0 2 0.00 2 70 0 0 0 71 0 0 0 72 0 5 0.00 5 73 0 2 0.00 2 74 1 2 33.33 3 75 0 3 0.00 3 76 0 2 0.00 2 77 0 5 0.00 5 78 0 0 0 79 0 1 0.00 1 80 0 2 0.00 2 81 0 2 0.00 2 82 0 3 0.00 3 83 0 1 0.00 1 84 0 1 0.00 1 85 0 1 0.00 1 86 0 0 0 87 0 1 0.00 1 88 0 3 0.00 3 89 0 1 0.00 1 90 0 3 0.00 3 91 0 1 0.00 1 92 0 3 0.00 3 93 0 0 0 94 0 0 0 95 0 1 0.00 1 96 0 2 0.00 2 97 0 2 0.00 2 98 0 0 0 99 0 1 0.00 1 100 0 1 0.00 1 101 0 1 0.00 1 102 0 1 0.00 1 103 0 0 0 104 0 1 0.00 1 105 0 2 0.00 2 106 0 1 0.00 1 107 0 2 0.00 2 108 0 1 0.00 1 109 0 1 0.00 1 110 1 0 100.00 1 111 0 0 0 112 0 2 0.00 2 113 0 1 0.00 1 114 0 2 0.00 2 115 0 0 0 116 0 1 0.00 1 117 0 1 0.00 1 118 0 0 0 119 0 1 0.00 1 120 0 1 0.00 1 121 0 1 0.00 1 122 0 1 0.00 1 123 0 1 0.00 1 124 0 1 0.00 1 125 0 1 0.00 1 126 0 1 0.00 1 127 0 0 0 128 0 2 0.00 2 129 0 1 0.00 1 130 0 0 0 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42 91 31.58 133 2 34 78 30.36 112 3 44 83 34.65 127 4 24 86 21.82 110 5 30 68 30.61 98 6 23 64 26.44 87 7 36 71 33.64 107 8 23 82 21.90 105 9 37 85 30.33 122 10 31 74 29.52 105 11 37 72 33.94 109 12 28 69 28.87 97 13 24 84 22.22 108 14 28 85 24.78 113 15 33 88 27.27 121 16 27 93 22.50 120 17 20 91 18.02 111 18 23 65 26.14 88 19 20 57 25.97 77 20 24 57 29.63 81 21 26 51 33.77 77 22 25 61 29.07 86 23 26 60 30.23 86 24 23 69 25.00 92 25 21 50 29.58 71 26 22 52 29.73 74 27 26 44 37.14 70 28 21 59 26.25 80 29 26 52 33.33 78 30 20 52 27.78 72 31 20 56 26.32 76 32 19 49 27.94 68 33 19 46 29.23 65 34 16 54 22.86 70 35 22 42 34.38 64 36 17 47 26.56 64 37 25 46 35.21 71 38 14 44 24.14 58 39 25 42 37.31 67 40 15 39 27.78 54 41 23 53 30.26 76 42 15 45 25.00 60 43 18 44 29.03 62 44 17 40 29.82 57 45 18 51 26.09 69 46 13 44 22.81 57 47 16 46 25.81 62 48 12 46 20.69 58 49 16 37 30.19 53 50 14 44 24.14 58 51 15 50 23.08 65 52 13 31 29.55 44 53 15 43 25.86 58 54 15 40 27.27 55 55 14 38 26.92 52 56 9 29 23.68 38 57 12 48 20.00 60 58 12 25 32.43 37 59 13 39 25.00 52 60 13 41 24.07 54 61 13 36 26.53 49 62 10 39 20.41 49 63 12 41 22.64 53 64 9 37 19.57 46 65 11 38 22.45 49 66 10 45 18.18 55 67 14 36 28.00 50 68 5 38 11.63 43 69 14 33 29.79 47 70 7 32 17.95 39 71 13 33 28.26 46 72 7 30 18.92 37 73 14 31 31.11 45 74 8 31 20.51 39 75 12 38 24.00 50 76 5 26 16.13 31 77 14 35 28.57 49 78 6 27 18.18 33 79 12 31 27.91 43 80 7 27 20.59 34 81 14 32 30.43 46 82 5 26 16.13 31 83 10 30 25.00 40 84 6 25 19.35 31 85 9 28 24.32 37 86 6 25 19.35 31 87 8 36 18.18 44 88 4 26 13.33 30 89 10 29 25.64 39 90 4 28 12.50 32 91 9 30 23.08 39 92 2 25 7.41 27 93 11 31 26.19 42 94 5 22 18.52 27 95 8 25 24.24 33 96 3 30 9.09 33 97 9 27 25.00 36 98 5 20 20.00 25 99 6 30 16.67 36 100 4 19 17.39 23 101 9 29 23.68 38 102 3 21 12.50 24 103 7 32 17.95 39 104 2 18 10.00 20 105 7 31 18.42 38 106 2 18 10.00 20 107 6 26 18.75 32 108 2 21 8.70 23 109 7 21 25.00 28 110 4 20 16.67 24 111 6 25 19.35 31 112 3 16 15.79 19 113 8 25 24.24 33 114 2 19 9.52 21 115 7 22 24.14 29 116 4 21 16.00 25 117 7 23 23.33 30 118 2 20 9.09 22 119 4 20 16.67 24 120 4 25 13.79 29 121 3 19 13.64 22 122 2 19 9.52 21 123 5 21 19.23 26 124 1 18 5.26 19 125 3 18 14.29 21 126 1 19 5.00 20 127 3 20 13.04 23 128 1 20 4.76 21 129 1 14 6.67 15 130 3 16 15.79 19 131 0 0 0