/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH09_02_S15_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11144
Pairs without alignments under any condition
23373
Pairs that did not map uniquely
5483
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
332075
Methylated C's in CpG context
33312
Methylated C's in CHG context
2204
Methylated C's in CHH context
47777
Methylated C's in Unknown context
769
Unmethylated C's in CpG context
15207
Unmethylated C's in CHG context
58730
Unmethylated C's in CHH context
174845
Unmethylated C's in Unknown context
1375
Percentage methylation (CpG context)
68.7%
Percentage methylation (CHG context)
3.6%
Percentage methylation (CHH context)
21.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5489
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5655
original bottom strand
Deduplication
Alignments analysed
11144
Unique alignments
9305
Duplicates removed
1839
Duplicated alignments were found at 1453 different positions
