/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_24_S14_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
8520
Pairs without alignments under any condition
26290
Pairs that did not map uniquely
5190
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
285564
Methylated C's in CpG context
2441
Methylated C's in CHG context
1116
Methylated C's in CHH context
34424
Methylated C's in Unknown context
547
Unmethylated C's in CpG context
31542
Unmethylated C's in CHG context
42341
Unmethylated C's in CHH context
173700
Unmethylated C's in Unknown context
1324
Percentage methylation (CpG context)
7.2%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
16.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4281
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4239
original bottom strand
Deduplication
Alignments analysed
8520
Unique alignments
7172
Duplicates removed
1348
Duplicated alignments were found at 1059 different positions
